co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G04340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0006903: vesicle targeting	0.00E+00
4	GO:0006216: cytidine catabolic process	0.00E+00
5	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
6	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:0006102: isocitrate metabolic process	1.45E-06
9	GO:0006099: tricarboxylic acid cycle	2.59E-05
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.52E-04
11	GO:0006680: glucosylceramide catabolic process	1.52E-04
12	GO:1900384: regulation of flavonol biosynthetic process	1.52E-04
13	GO:0009805: coumarin biosynthetic process	3.47E-04
14	GO:0006672: ceramide metabolic process	3.47E-04
15	GO:0080026: response to indolebutyric acid	3.47E-04
16	GO:0055046: microgametogenesis	3.61E-04
17	GO:0034976: response to endoplasmic reticulum stress	5.09E-04
18	GO:0006517: protein deglycosylation	5.68E-04
19	GO:0010272: response to silver ion	5.68E-04
20	GO:0009062: fatty acid catabolic process	5.68E-04
21	GO:0009846: pollen germination	6.41E-04
22	GO:0000187: activation of MAPK activity	8.13E-04
23	GO:0006612: protein targeting to membrane	8.13E-04
24	GO:0006893: Golgi to plasma membrane transport	8.13E-04
25	GO:0080024: indolebutyric acid metabolic process	8.13E-04
26	GO:0016192: vesicle-mediated transport	9.67E-04
27	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.08E-03
28	GO:0006085: acetyl-CoA biosynthetic process	1.08E-03
29	GO:1902584: positive regulation of response to water deprivation	1.08E-03
30	GO:0006221: pyrimidine nucleotide biosynthetic process	1.08E-03
31	GO:0015031: protein transport	1.19E-03
32	GO:0045927: positive regulation of growth	1.36E-03
33	GO:0098719: sodium ion import across plasma membrane	1.36E-03
34	GO:0005513: detection of calcium ion	1.36E-03
35	GO:0030163: protein catabolic process	1.52E-03
36	GO:0006555: methionine metabolic process	1.67E-03
37	GO:0060918: auxin transport	1.67E-03
38	GO:0045040: protein import into mitochondrial outer membrane	1.67E-03
39	GO:0009972: cytidine deamination	1.67E-03
40	GO:0019509: L-methionine salvage from methylthioadenosine	2.01E-03
41	GO:0034389: lipid particle organization	2.01E-03
42	GO:0009612: response to mechanical stimulus	2.01E-03
43	GO:0009082: branched-chain amino acid biosynthetic process	2.01E-03
44	GO:0009099: valine biosynthetic process	2.01E-03
45	GO:0006744: ubiquinone biosynthetic process	2.36E-03
46	GO:0080186: developmental vegetative growth	2.36E-03
47	GO:0071669: plant-type cell wall organization or biogenesis	2.36E-03
48	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.36E-03
49	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.73E-03
50	GO:0006491: N-glycan processing	2.73E-03
51	GO:0009699: phenylpropanoid biosynthetic process	3.12E-03
52	GO:0006002: fructose 6-phosphate metabolic process	3.12E-03
53	GO:0060321: acceptance of pollen	3.12E-03
54	GO:0006367: transcription initiation from RNA polymerase II promoter	3.12E-03
55	GO:0010120: camalexin biosynthetic process	3.12E-03
56	GO:0009097: isoleucine biosynthetic process	3.12E-03
57	GO:0046685: response to arsenic-containing substance	3.53E-03
58	GO:0051453: regulation of intracellular pH	3.96E-03
59	GO:0010205: photoinhibition	3.96E-03
60	GO:0043067: regulation of programmed cell death	3.96E-03
61	GO:0009098: leucine biosynthetic process	3.96E-03
62	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.96E-03
63	GO:0000209: protein polyubiquitination	4.22E-03
64	GO:0043069: negative regulation of programmed cell death	4.40E-03
65	GO:0006032: chitin catabolic process	4.40E-03
66	GO:0009688: abscisic acid biosynthetic process	4.40E-03
67	GO:0009682: induced systemic resistance	4.86E-03
68	GO:0000272: polysaccharide catabolic process	4.86E-03
69	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.90E-03
70	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.34E-03
71	GO:0006790: sulfur compound metabolic process	5.34E-03
72	GO:0051603: proteolysis involved in cellular protein catabolic process	5.65E-03
73	GO:0010102: lateral root morphogenesis	5.83E-03
74	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.83E-03
75	GO:0006626: protein targeting to mitochondrion	5.83E-03
76	GO:0006511: ubiquitin-dependent protein catabolic process	6.13E-03
77	GO:0046686: response to cadmium ion	6.38E-03
78	GO:0046854: phosphatidylinositol phosphorylation	6.86E-03
79	GO:0010053: root epidermal cell differentiation	6.86E-03
80	GO:0007031: peroxisome organization	6.86E-03
81	GO:0007030: Golgi organization	6.86E-03
82	GO:0009751: response to salicylic acid	7.91E-03
83	GO:0006338: chromatin remodeling	7.95E-03
84	GO:0008299: isoprenoid biosynthetic process	8.51E-03
85	GO:0015992: proton transport	9.10E-03
86	GO:0019915: lipid storage	9.10E-03
87	GO:0016998: cell wall macromolecule catabolic process	9.10E-03
88	GO:0019748: secondary metabolic process	9.69E-03
89	GO:0009814: defense response, incompatible interaction	9.69E-03
90	GO:0030433: ubiquitin-dependent ERAD pathway	9.69E-03
91	GO:0010227: floral organ abscission	1.03E-02
92	GO:0009561: megagametogenesis	1.09E-02
93	GO:0009306: protein secretion	1.09E-02
94	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
95	GO:0010051: xylem and phloem pattern formation	1.22E-02
96	GO:0045489: pectin biosynthetic process	1.29E-02
97	GO:0006814: sodium ion transport	1.36E-02
98	GO:0009851: auxin biosynthetic process	1.42E-02
99	GO:0006635: fatty acid beta-oxidation	1.50E-02
100	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.51E-02
101	GO:0009617: response to bacterium	1.61E-02
102	GO:0009555: pollen development	1.67E-02
103	GO:0006464: cellular protein modification process	1.71E-02
104	GO:0071805: potassium ion transmembrane transport	1.79E-02
105	GO:0006904: vesicle docking involved in exocytosis	1.79E-02
106	GO:0009615: response to virus	1.94E-02
107	GO:0009627: systemic acquired resistance	2.10E-02
108	GO:0009860: pollen tube growth	2.25E-02
109	GO:0008219: cell death	2.34E-02
110	GO:0009651: response to salt stress	2.39E-02
111	GO:0048767: root hair elongation	2.43E-02
112	GO:0006499: N-terminal protein myristoylation	2.51E-02
113	GO:0009407: toxin catabolic process	2.51E-02
114	GO:0009631: cold acclimation	2.60E-02
115	GO:0045087: innate immune response	2.78E-02
116	GO:0045454: cell redox homeostasis	3.10E-02
117	GO:0006887: exocytosis	3.14E-02
118	GO:0006886: intracellular protein transport	3.20E-02
119	GO:0051707: response to other organism	3.32E-02
120	GO:0009644: response to high light intensity	3.52E-02
121	GO:0009636: response to toxic substance	3.61E-02
122	GO:0031347: regulation of defense response	3.81E-02
123	GO:0000165: MAPK cascade	3.81E-02
124	GO:0042742: defense response to bacterium	4.03E-02
125	GO:0006096: glycolytic process	4.63E-02
126	GO:0009626: plant-type hypersensitive response	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0001729: ceramide kinase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
6	GO:0047844: deoxycytidine deaminase activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.48E-08
8	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.52E-04
9	GO:0048037: cofactor binding	1.52E-04
10	GO:0004348: glucosylceramidase activity	1.52E-04
11	GO:0003746: translation elongation factor activity	3.46E-04
12	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.47E-04
13	GO:0010297: heteropolysaccharide binding	3.47E-04
14	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.47E-04
15	GO:0050347: trans-octaprenyltranstransferase activity	3.47E-04
16	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.47E-04
17	GO:0004127: cytidylate kinase activity	3.47E-04
18	GO:0008805: carbon-monoxide oxygenase activity	3.47E-04
19	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.47E-04
20	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.47E-04
21	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.47E-04
22	GO:0004190: aspartic-type endopeptidase activity	4.57E-04
23	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.68E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.68E-04
25	GO:0004298: threonine-type endopeptidase activity	6.79E-04
26	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.13E-04
27	GO:0052654: L-leucine transaminase activity	8.13E-04
28	GO:0052655: L-valine transaminase activity	8.13E-04
29	GO:0003878: ATP citrate synthase activity	8.13E-04
30	GO:0009041: uridylate kinase activity	8.13E-04
31	GO:0052656: L-isoleucine transaminase activity	8.13E-04
32	GO:0003756: protein disulfide isomerase activity	8.75E-04
33	GO:0004659: prenyltransferase activity	1.08E-03
34	GO:0004084: branched-chain-amino-acid transaminase activity	1.08E-03
35	GO:0070628: proteasome binding	1.08E-03
36	GO:0008022: protein C-terminus binding	1.08E-03
37	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.08E-03
38	GO:0004031: aldehyde oxidase activity	1.08E-03
39	GO:0050302: indole-3-acetaldehyde oxidase activity	1.08E-03
40	GO:0008374: O-acyltransferase activity	1.36E-03
41	GO:0031593: polyubiquitin binding	1.67E-03
42	GO:0035252: UDP-xylosyltransferase activity	1.67E-03
43	GO:0008565: protein transporter activity	1.80E-03
44	GO:0004126: cytidine deaminase activity	2.01E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.01E-03
46	GO:0004656: procollagen-proline 4-dioxygenase activity	2.01E-03
47	GO:0003872: 6-phosphofructokinase activity	2.36E-03
48	GO:0008320: protein transmembrane transporter activity	2.36E-03
49	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.73E-03
50	GO:0004708: MAP kinase kinase activity	2.73E-03
51	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.12E-03
52	GO:0003951: NAD+ kinase activity	3.12E-03
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.15E-03
54	GO:0003824: catalytic activity	3.46E-03
55	GO:0004568: chitinase activity	4.40E-03
56	GO:0004161: dimethylallyltranstransferase activity	4.86E-03
57	GO:0015386: potassium:proton antiporter activity	4.86E-03
58	GO:0051287: NAD binding	4.90E-03
59	GO:0061630: ubiquitin protein ligase activity	5.24E-03
60	GO:0031625: ubiquitin protein ligase binding	6.04E-03
61	GO:0031624: ubiquitin conjugating enzyme binding	6.33E-03
62	GO:0008061: chitin binding	6.86E-03
63	GO:0031418: L-ascorbic acid binding	7.95E-03
64	GO:0043130: ubiquitin binding	7.95E-03
65	GO:0004402: histone acetyltransferase activity	1.22E-02
66	GO:0001085: RNA polymerase II transcription factor binding	1.29E-02
67	GO:0015385: sodium:proton antiporter activity	1.64E-02
68	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.79E-02
69	GO:0008237: metallopeptidase activity	1.79E-02
70	GO:0051213: dioxygenase activity	1.94E-02
71	GO:0000287: magnesium ion binding	2.05E-02
72	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.18E-02
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.34E-02
74	GO:0050660: flavin adenine dinucleotide binding	2.41E-02
75	GO:0008233: peptidase activity	2.54E-02
76	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.60E-02
77	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.60E-02
78	GO:0004364: glutathione transferase activity	3.23E-02
79	GO:0005524: ATP binding	3.47E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	3.52E-02
81	GO:0005198: structural molecule activity	3.61E-02
82	GO:0005509: calcium ion binding	3.65E-02
83	GO:0005506: iron ion binding	3.95E-02
84	GO:0008270: zinc ion binding	4.03E-02
85	GO:0009055: electron carrier activity	4.09E-02

Rank	GO Term	Adjusted P value
1	GO:0005794: Golgi apparatus	3.55E-06
2	GO:0005839: proteasome core complex	3.40E-05
3	GO:0005783: endoplasmic reticulum	4.78E-05
4	GO:0000502: proteasome complex	6.92E-05
5	GO:0032580: Golgi cisterna membrane	1.36E-04
6	GO:0009346: citrate lyase complex	8.13E-04
7	GO:0030660: Golgi-associated vesicle membrane	1.08E-03
8	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.08E-03
9	GO:0005945: 6-phosphofructokinase complex	1.36E-03
10	GO:0030904: retromer complex	1.67E-03
11	GO:0030173: integral component of Golgi membrane	2.01E-03
12	GO:0005788: endoplasmic reticulum lumen	2.03E-03
13	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.36E-03
14	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.73E-03
15	GO:0031982: vesicle	2.73E-03
16	GO:0019773: proteasome core complex, alpha-subunit complex	3.12E-03
17	GO:0005742: mitochondrial outer membrane translocase complex	3.12E-03
18	GO:0005811: lipid particle	3.12E-03
19	GO:0031901: early endosome membrane	3.53E-03
20	GO:0031090: organelle membrane	3.53E-03
21	GO:0005765: lysosomal membrane	4.86E-03
22	GO:0008541: proteasome regulatory particle, lid subcomplex	4.86E-03
23	GO:0005829: cytosol	5.74E-03
24	GO:0005774: vacuolar membrane	8.58E-03
25	GO:0005768: endosome	9.56E-03
26	GO:0005886: plasma membrane	9.72E-03
27	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.09E-02
28	GO:0016592: mediator complex	1.57E-02
29	GO:0000145: exocyst	1.57E-02
30	GO:0005778: peroxisomal membrane	1.79E-02
31	GO:0005737: cytoplasm	1.82E-02
32	GO:0030529: intracellular ribonucleoprotein complex	1.94E-02
33	GO:0005667: transcription factor complex	2.10E-02
34	GO:0000151: ubiquitin ligase complex	2.34E-02
35	GO:0005643: nuclear pore	2.34E-02
36	GO:0005802: trans-Golgi network	3.02E-02
37	GO:0031902: late endosome membrane	3.14E-02
38	GO:0005856: cytoskeleton	3.61E-02
39	GO:0010008: endosome membrane	4.73E-02