co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
3	GO:0010120: camalexin biosynthetic process	1.17E-05
4	GO:1901430: positive regulation of syringal lignin biosynthetic process	3.12E-05
5	GO:0006144: purine nucleobase metabolic process	3.12E-05
6	GO:0019628: urate catabolic process	3.12E-05
7	GO:0006807: nitrogen compound metabolic process	3.71E-05
8	GO:0006996: organelle organization	7.88E-05
9	GO:0006672: ceramide metabolic process	7.88E-05
10	GO:0042744: hydrogen peroxide catabolic process	1.11E-04
11	GO:0006536: glutamate metabolic process	2.76E-04
12	GO:0006564: L-serine biosynthetic process	3.53E-04
13	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.34E-04
14	GO:0006561: proline biosynthetic process	4.34E-04
15	GO:0009228: thiamine biosynthetic process	4.34E-04
16	GO:0006099: tricarboxylic acid cycle	4.39E-04
17	GO:0042742: defense response to bacterium	4.58E-04
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	5.20E-04
19	GO:1900056: negative regulation of leaf senescence	6.07E-04
20	GO:0006102: isocitrate metabolic process	6.99E-04
21	GO:0006096: glycolytic process	8.40E-04
22	GO:0055114: oxidation-reduction process	8.85E-04
23	GO:0046686: response to cadmium ion	8.95E-04
24	GO:0043067: regulation of programmed cell death	9.92E-04
25	GO:0009688: abscisic acid biosynthetic process	1.10E-03
26	GO:0043069: negative regulation of programmed cell death	1.10E-03
27	GO:0072593: reactive oxygen species metabolic process	1.20E-03
28	GO:0009682: induced systemic resistance	1.20E-03
29	GO:0009058: biosynthetic process	1.30E-03
30	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	1.31E-03
31	GO:0006790: sulfur compound metabolic process	1.31E-03
32	GO:0009718: anthocyanin-containing compound biosynthetic process	1.43E-03
33	GO:0046854: phosphatidylinositol phosphorylation	1.67E-03
34	GO:0007031: peroxisome organization	1.67E-03
35	GO:0010150: leaf senescence	1.69E-03
36	GO:0005992: trehalose biosynthetic process	1.92E-03
37	GO:0030433: ubiquitin-dependent ERAD pathway	2.32E-03
38	GO:0050832: defense response to fungus	2.36E-03
39	GO:0010089: xylem development	2.61E-03
40	GO:0009561: megagametogenesis	2.61E-03
41	GO:0006979: response to oxidative stress	2.87E-03
42	GO:0010118: stomatal movement	2.90E-03
43	GO:0009851: auxin biosynthetic process	3.36E-03
44	GO:0006914: autophagy	4.00E-03
45	GO:0008219: cell death	5.42E-03
46	GO:0009926: auxin polar transport	7.60E-03
47	GO:0051707: response to other organism	7.60E-03
48	GO:0006855: drug transmembrane transport	8.46E-03
49	GO:0031347: regulation of defense response	8.68E-03
50	GO:0009664: plant-type cell wall organization	8.91E-03
51	GO:0042538: hyperosmotic salinity response	8.91E-03
52	GO:0009809: lignin biosynthetic process	9.36E-03
53	GO:0009626: plant-type hypersensitive response	1.10E-02
54	GO:0009624: response to nematode	1.20E-02
55	GO:0009414: response to water deprivation	1.65E-02
56	GO:0009739: response to gibberellin	1.91E-02
57	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
58	GO:0007166: cell surface receptor signaling pathway	1.94E-02
59	GO:0009617: response to bacterium	2.00E-02
60	GO:0015031: protein transport	2.15E-02
61	GO:0009826: unidimensional cell growth	2.34E-02
62	GO:0006952: defense response	2.48E-02
63	GO:0080167: response to karrikin	2.81E-02
64	GO:0016042: lipid catabolic process	3.63E-02
65	GO:0006629: lipid metabolic process	3.71E-02

Rank	GO Term	Adjusted P value
1	GO:0001729: ceramide kinase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0004846: urate oxidase activity	0.00E+00
4	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.30E-06
5	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.30E-06
6	GO:0030955: potassium ion binding	1.84E-05
7	GO:0004743: pyruvate kinase activity	1.84E-05
8	GO:0048037: cofactor binding	3.12E-05
9	GO:0010013: N-1-naphthylphthalamic acid binding	3.12E-05
10	GO:0019786: Atg8-specific protease activity	3.12E-05
11	GO:0019172: glyoxalase III activity	7.88E-05
12	GO:0008517: folic acid transporter activity	7.88E-05
13	GO:0004776: succinate-CoA ligase (GDP-forming) activity	7.88E-05
14	GO:0052739: phosphatidylserine 1-acylhydrolase activity	7.88E-05
15	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	7.88E-05
16	GO:0004617: phosphoglycerate dehydrogenase activity	7.88E-05
17	GO:0004775: succinate-CoA ligase (ADP-forming) activity	7.88E-05
18	GO:0019779: Atg8 activating enzyme activity	7.88E-05
19	GO:0030170: pyridoxal phosphate binding	1.07E-04
20	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.37E-04
21	GO:0004351: glutamate decarboxylase activity	2.04E-04
22	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.04E-04
23	GO:0000287: magnesium ion binding	2.59E-04
24	GO:0004601: peroxidase activity	2.66E-04
25	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.76E-04
26	GO:0004031: aldehyde oxidase activity	2.76E-04
27	GO:0050302: indole-3-acetaldehyde oxidase activity	2.76E-04
28	GO:0019776: Atg8 ligase activity	2.76E-04
29	GO:0008374: O-acyltransferase activity	3.53E-04
30	GO:0036402: proteasome-activating ATPase activity	4.34E-04
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.20E-04
32	GO:0051287: NAD binding	6.46E-04
33	GO:0003951: NAD+ kinase activity	7.94E-04
34	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	7.94E-04
35	GO:0020037: heme binding	9.12E-04
36	GO:0004177: aminopeptidase activity	1.20E-03
37	GO:0008559: xenobiotic-transporting ATPase activity	1.20E-03
38	GO:0017025: TBP-class protein binding	1.67E-03
39	GO:0005199: structural constituent of cell wall	3.05E-03
40	GO:0016597: amino acid binding	4.34E-03
41	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.99E-03
42	GO:0051537: 2 iron, 2 sulfur cluster binding	8.03E-03
43	GO:0005198: structural molecule activity	8.24E-03
44	GO:0005507: copper ion binding	1.19E-02
45	GO:0005509: calcium ion binding	1.56E-02
46	GO:0008565: protein transporter activity	1.60E-02
47	GO:0005506: iron ion binding	1.66E-02
48	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.68E-02
49	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.09E-02
50	GO:0004842: ubiquitin-protein transferase activity	2.34E-02
51	GO:0005524: ATP binding	2.47E-02
52	GO:0043531: ADP binding	2.57E-02
53	GO:0050660: flavin adenine dinucleotide binding	2.67E-02
54	GO:0016301: kinase activity	3.20E-02
55	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.37E-02
56	GO:0046872: metal ion binding	3.67E-02
57	GO:0009055: electron carrier activity	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.30E-04
2	GO:0009530: primary cell wall	1.37E-04
3	GO:0005775: vacuolar lumen	2.04E-04
4	GO:0005776: autophagosome	2.76E-04
5	GO:0031597: cytosolic proteasome complex	5.20E-04
6	GO:0031595: nuclear proteasome complex	6.07E-04
7	GO:0005774: vacuolar membrane	6.23E-04
8	GO:0000421: autophagosome membrane	6.99E-04
9	GO:0000502: proteasome complex	7.16E-04
10	GO:0031090: organelle membrane	8.92E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	9.92E-04
12	GO:0031410: cytoplasmic vesicle	2.32E-03
13	GO:0005618: cell wall	3.65E-03
14	GO:0009707: chloroplast outer membrane	5.42E-03
15	GO:0000325: plant-type vacuole	5.99E-03
16	GO:0005777: peroxisome	9.56E-03
17	GO:0009536: plastid	2.08E-02
18	GO:0009506: plasmodesma	2.25E-02
19	GO:0005773: vacuole	2.35E-02
20	GO:0005874: microtubule	2.74E-02
21	GO:0005739: mitochondrion	3.11E-02