Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0046471: phosphatidylglycerol metabolic process0.00E+00
4GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
5GO:0009661: chromoplast organization0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
9GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
10GO:0033494: ferulate metabolic process0.00E+00
11GO:0010207: photosystem II assembly4.44E-09
12GO:0015979: photosynthesis9.74E-07
13GO:0015995: chlorophyll biosynthetic process1.75E-06
14GO:0009773: photosynthetic electron transport in photosystem I4.02E-06
15GO:0090391: granum assembly3.77E-05
16GO:0032544: plastid translation4.00E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.09E-05
18GO:0071484: cellular response to light intensity8.09E-05
19GO:0015994: chlorophyll metabolic process1.40E-04
20GO:0042549: photosystem II stabilization3.03E-04
21GO:0010190: cytochrome b6f complex assembly3.03E-04
22GO:0009768: photosynthesis, light harvesting in photosystem I3.67E-04
23GO:0006810: transport3.89E-04
24GO:1901259: chloroplast rRNA processing4.05E-04
25GO:0080112: seed growth5.03E-04
26GO:0005980: glycogen catabolic process5.03E-04
27GO:0015671: oxygen transport5.03E-04
28GO:0043953: protein transport by the Tat complex5.03E-04
29GO:0019544: arginine catabolic process to glutamate5.03E-04
30GO:0071277: cellular response to calcium ion5.03E-04
31GO:0065002: intracellular protein transmembrane transport5.03E-04
32GO:0080093: regulation of photorespiration5.03E-04
33GO:0031998: regulation of fatty acid beta-oxidation5.03E-04
34GO:0010028: xanthophyll cycle5.03E-04
35GO:0034337: RNA folding5.03E-04
36GO:0000476: maturation of 4.5S rRNA5.03E-04
37GO:0000967: rRNA 5'-end processing5.03E-04
38GO:1905039: carboxylic acid transmembrane transport5.03E-04
39GO:1905200: gibberellic acid transmembrane transport5.03E-04
40GO:0046467: membrane lipid biosynthetic process5.03E-04
41GO:0010196: nonphotochemical quenching5.20E-04
42GO:0009658: chloroplast organization5.80E-04
43GO:0006353: DNA-templated transcription, termination6.48E-04
44GO:0010114: response to red light7.65E-04
45GO:0009657: plastid organization7.90E-04
46GO:0090333: regulation of stomatal closure9.43E-04
47GO:0006098: pentose-phosphate shunt9.43E-04
48GO:0019252: starch biosynthetic process9.44E-04
49GO:0060151: peroxisome localization1.08E-03
50GO:0006898: receptor-mediated endocytosis1.08E-03
51GO:0034755: iron ion transmembrane transport1.08E-03
52GO:0071457: cellular response to ozone1.08E-03
53GO:1904143: positive regulation of carotenoid biosynthetic process1.08E-03
54GO:0016122: xanthophyll metabolic process1.08E-03
55GO:0034470: ncRNA processing1.08E-03
56GO:0051645: Golgi localization1.08E-03
57GO:0080029: cellular response to boron-containing substance levels1.08E-03
58GO:0010027: thylakoid membrane organization1.64E-03
59GO:0009405: pathogenesis1.77E-03
60GO:0090436: leaf pavement cell development1.77E-03
61GO:0051646: mitochondrion localization1.77E-03
62GO:0006696: ergosterol biosynthetic process1.77E-03
63GO:0005977: glycogen metabolic process1.77E-03
64GO:0006094: gluconeogenesis1.95E-03
65GO:0030048: actin filament-based movement1.95E-03
66GO:0048467: gynoecium development2.20E-03
67GO:0010143: cutin biosynthetic process2.20E-03
68GO:0006168: adenine salvage2.57E-03
69GO:0046713: borate transport2.57E-03
70GO:1902358: sulfate transmembrane transport2.57E-03
71GO:0045338: farnesyl diphosphate metabolic process2.57E-03
72GO:0006166: purine ribonucleoside salvage2.57E-03
73GO:0006020: inositol metabolic process2.57E-03
74GO:0009152: purine ribonucleotide biosynthetic process2.57E-03
75GO:0046653: tetrahydrofolate metabolic process2.57E-03
76GO:0009052: pentose-phosphate shunt, non-oxidative branch2.57E-03
77GO:0006636: unsaturated fatty acid biosynthetic process2.75E-03
78GO:0034599: cellular response to oxidative stress3.30E-03
79GO:0055114: oxidation-reduction process3.33E-03
80GO:0006021: inositol biosynthetic process3.46E-03
81GO:0071483: cellular response to blue light3.46E-03
82GO:0010021: amylopectin biosynthetic process3.46E-03
83GO:0010037: response to carbon dioxide3.46E-03
84GO:0015976: carbon utilization3.46E-03
85GO:0071486: cellular response to high light intensity3.46E-03
86GO:0009765: photosynthesis, light harvesting3.46E-03
87GO:0010107: potassium ion import3.46E-03
88GO:2000122: negative regulation of stomatal complex development3.46E-03
89GO:0045727: positive regulation of translation3.46E-03
90GO:0061077: chaperone-mediated protein folding3.71E-03
91GO:0098719: sodium ion import across plasma membrane4.44E-03
92GO:0016120: carotene biosynthetic process4.44E-03
93GO:0006564: L-serine biosynthetic process4.44E-03
94GO:0006656: phosphatidylcholine biosynthetic process4.44E-03
95GO:0009904: chloroplast accumulation movement4.44E-03
96GO:0006097: glyoxylate cycle4.44E-03
97GO:0044209: AMP salvage4.44E-03
98GO:0006465: signal peptide processing4.44E-03
99GO:0071493: cellular response to UV-B4.44E-03
100GO:0009228: thiamine biosynthetic process5.50E-03
101GO:0009643: photosynthetic acclimation5.50E-03
102GO:0046855: inositol phosphate dephosphorylation5.50E-03
103GO:0010304: PSII associated light-harvesting complex II catabolic process5.50E-03
104GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.50E-03
105GO:1902456: regulation of stomatal opening5.50E-03
106GO:0006364: rRNA processing6.33E-03
107GO:0032259: methylation6.33E-03
108GO:0009903: chloroplast avoidance movement6.63E-03
109GO:0071333: cellular response to glucose stimulus6.63E-03
110GO:0009955: adaxial/abaxial pattern specification6.63E-03
111GO:0009791: post-embryonic development7.04E-03
112GO:0009645: response to low light intensity stimulus7.85E-03
113GO:0008272: sulfate transport7.85E-03
114GO:0009769: photosynthesis, light harvesting in photosystem II7.85E-03
115GO:1900056: negative regulation of leaf senescence7.85E-03
116GO:0032502: developmental process8.06E-03
117GO:0005975: carbohydrate metabolic process8.39E-03
118GO:1901657: glycosyl compound metabolic process8.60E-03
119GO:0009642: response to light intensity9.14E-03
120GO:0010078: maintenance of root meristem identity9.14E-03
121GO:0009704: de-etiolation9.14E-03
122GO:0042255: ribosome assembly9.14E-03
123GO:0070413: trehalose metabolism in response to stress9.14E-03
124GO:0050821: protein stabilization9.14E-03
125GO:0055075: potassium ion homeostasis9.14E-03
126GO:0052543: callose deposition in cell wall9.14E-03
127GO:0048564: photosystem I assembly9.14E-03
128GO:0043562: cellular response to nitrogen levels1.05E-02
129GO:0015996: chlorophyll catabolic process1.05E-02
130GO:0019430: removal of superoxide radicals1.05E-02
131GO:0019432: triglyceride biosynthetic process1.19E-02
132GO:0009821: alkaloid biosynthetic process1.19E-02
133GO:0010206: photosystem II repair1.19E-02
134GO:0010380: regulation of chlorophyll biosynthetic process1.34E-02
135GO:0051453: regulation of intracellular pH1.34E-02
136GO:0005982: starch metabolic process1.34E-02
137GO:0006779: porphyrin-containing compound biosynthetic process1.34E-02
138GO:0018298: protein-chromophore linkage1.43E-02
139GO:0006782: protoporphyrinogen IX biosynthetic process1.50E-02
140GO:0009641: shade avoidance1.50E-02
141GO:0009813: flavonoid biosynthetic process1.51E-02
142GO:0010218: response to far red light1.58E-02
143GO:0009735: response to cytokinin1.58E-02
144GO:0006879: cellular iron ion homeostasis1.66E-02
145GO:0015770: sucrose transport1.66E-02
146GO:0000272: polysaccharide catabolic process1.66E-02
147GO:0006415: translational termination1.66E-02
148GO:0018119: peptidyl-cysteine S-nitrosylation1.66E-02
149GO:0009684: indoleacetic acid biosynthetic process1.66E-02
150GO:0072593: reactive oxygen species metabolic process1.66E-02
151GO:0043085: positive regulation of catalytic activity1.66E-02
152GO:0009637: response to blue light1.82E-02
153GO:0009853: photorespiration1.82E-02
154GO:0016024: CDP-diacylglycerol biosynthetic process1.83E-02
155GO:0006790: sulfur compound metabolic process1.83E-02
156GO:0006108: malate metabolic process2.01E-02
157GO:0009767: photosynthetic electron transport chain2.01E-02
158GO:0010588: cotyledon vascular tissue pattern formation2.01E-02
159GO:0006631: fatty acid metabolic process2.17E-02
160GO:0007015: actin filament organization2.18E-02
161GO:0010223: secondary shoot formation2.18E-02
162GO:0009266: response to temperature stimulus2.18E-02
163GO:0009901: anther dehiscence2.37E-02
164GO:0046854: phosphatidylinositol phosphorylation2.37E-02
165GO:0019853: L-ascorbic acid biosynthetic process2.37E-02
166GO:0005992: trehalose biosynthetic process2.76E-02
167GO:0006418: tRNA aminoacylation for protein translation2.96E-02
168GO:0016114: terpenoid biosynthetic process3.16E-02
169GO:0003333: amino acid transmembrane transport3.16E-02
170GO:0019915: lipid storage3.16E-02
171GO:0009269: response to desiccation3.16E-02
172GO:0030433: ubiquitin-dependent ERAD pathway3.38E-02
173GO:0019748: secondary metabolic process3.38E-02
174GO:0016226: iron-sulfur cluster assembly3.38E-02
175GO:0071215: cellular response to abscisic acid stimulus3.59E-02
176GO:0006012: galactose metabolic process3.59E-02
177GO:0006096: glycolytic process3.75E-02
178GO:0009306: protein secretion3.81E-02
179GO:0048367: shoot system development3.87E-02
180GO:0016117: carotenoid biosynthetic process4.04E-02
181GO:0080022: primary root development4.27E-02
182GO:0000413: protein peptidyl-prolyl isomerization4.27E-02
183GO:0010087: phloem or xylem histogenesis4.27E-02
184GO:0042631: cellular response to water deprivation4.27E-02
185GO:0080167: response to karrikin4.49E-02
186GO:0071472: cellular response to salt stress4.50E-02
187GO:0010154: fruit development4.50E-02
188GO:0006662: glycerol ether metabolic process4.50E-02
189GO:0009741: response to brassinosteroid4.50E-02
190GO:0009958: positive gravitropism4.50E-02
191GO:0006885: regulation of pH4.50E-02
192GO:0006520: cellular amino acid metabolic process4.50E-02
193GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.68E-02
194GO:0006814: sodium ion transport4.73E-02
195GO:0048825: cotyledon development4.97E-02
196GO:0009851: auxin biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
2GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0046408: chlorophyll synthetase activity0.00E+00
5GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
8GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
9GO:0010349: L-galactose dehydrogenase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
12GO:0046422: violaxanthin de-epoxidase activity0.00E+00
13GO:0009011: starch synthase activity1.71E-06
14GO:0016851: magnesium chelatase activity8.09E-05
15GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.40E-04
16GO:0031409: pigment binding2.78E-04
17GO:0004332: fructose-bisphosphate aldolase activity3.03E-04
18GO:0005528: FK506 binding3.21E-04
19GO:0034256: chlorophyll(ide) b reductase activity5.03E-04
20GO:0015168: glycerol transmembrane transporter activity5.03E-04
21GO:0045486: naringenin 3-dioxygenase activity5.03E-04
22GO:0005344: oxygen transporter activity5.03E-04
23GO:0035671: enone reductase activity5.03E-04
24GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity5.03E-04
25GO:1905201: gibberellin transmembrane transporter activity5.03E-04
26GO:0008184: glycogen phosphorylase activity5.03E-04
27GO:0004856: xylulokinase activity5.03E-04
28GO:0004645: phosphorylase activity5.03E-04
29GO:0019843: rRNA binding6.18E-04
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.65E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity1.08E-03
32GO:0019172: glyoxalase III activity1.08E-03
33GO:0019156: isoamylase activity1.08E-03
34GO:0052833: inositol monophosphate 4-phosphatase activity1.08E-03
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.08E-03
36GO:0000234: phosphoethanolamine N-methyltransferase activity1.08E-03
37GO:0047746: chlorophyllase activity1.08E-03
38GO:0042389: omega-3 fatty acid desaturase activity1.08E-03
39GO:0010297: heteropolysaccharide binding1.08E-03
40GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.08E-03
41GO:0009977: proton motive force dependent protein transmembrane transporter activity1.08E-03
42GO:0004617: phosphoglycerate dehydrogenase activity1.08E-03
43GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity1.08E-03
44GO:0052832: inositol monophosphate 3-phosphatase activity1.08E-03
45GO:0033201: alpha-1,4-glucan synthase activity1.08E-03
46GO:0018708: thiol S-methyltransferase activity1.08E-03
47GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.08E-03
48GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.08E-03
49GO:0015386: potassium:proton antiporter activity1.50E-03
50GO:0047372: acylglycerol lipase activity1.50E-03
51GO:0016168: chlorophyll binding1.76E-03
52GO:0002161: aminoacyl-tRNA editing activity1.77E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.77E-03
54GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.77E-03
55GO:0008864: formyltetrahydrofolate deformylase activity1.77E-03
56GO:0004373: glycogen (starch) synthase activity1.77E-03
57GO:0090729: toxin activity1.77E-03
58GO:0050734: hydroxycinnamoyltransferase activity1.77E-03
59GO:0003774: motor activity2.20E-03
60GO:0016149: translation release factor activity, codon specific2.57E-03
61GO:0022890: inorganic cation transmembrane transporter activity2.57E-03
62GO:0046715: borate transmembrane transporter activity2.57E-03
63GO:0019201: nucleotide kinase activity2.57E-03
64GO:0003999: adenine phosphoribosyltransferase activity2.57E-03
65GO:0015204: urea transmembrane transporter activity3.46E-03
66GO:0008453: alanine-glyoxylate transaminase activity3.46E-03
67GO:0045430: chalcone isomerase activity3.46E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor4.44E-03
69GO:0016846: carbon-sulfur lyase activity4.44E-03
70GO:0003727: single-stranded RNA binding4.82E-03
71GO:0004556: alpha-amylase activity5.50E-03
72GO:0004462: lactoylglutathione lyase activity5.50E-03
73GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.50E-03
74GO:0004784: superoxide dismutase activity5.50E-03
75GO:0015081: sodium ion transmembrane transporter activity5.50E-03
76GO:0016615: malate dehydrogenase activity5.50E-03
77GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.50E-03
78GO:0016491: oxidoreductase activity6.02E-03
79GO:0030060: L-malate dehydrogenase activity6.63E-03
80GO:0004017: adenylate kinase activity6.63E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.63E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.63E-03
83GO:0048038: quinone binding7.54E-03
84GO:0008168: methyltransferase activity8.74E-03
85GO:0004033: aldo-keto reductase (NADP) activity9.14E-03
86GO:0016791: phosphatase activity9.16E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.05E-02
88GO:0008135: translation factor activity, RNA binding1.05E-02
89GO:0008271: secondary active sulfate transmembrane transporter activity1.05E-02
90GO:0003747: translation release factor activity1.19E-02
91GO:0102483: scopolin beta-glucosidase activity1.29E-02
92GO:0016844: strictosidine synthase activity1.34E-02
93GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.34E-02
94GO:0005381: iron ion transmembrane transporter activity1.34E-02
95GO:0015174: basic amino acid transmembrane transporter activity1.34E-02
96GO:0008047: enzyme activator activity1.50E-02
97GO:0015020: glucuronosyltransferase activity1.50E-02
98GO:0008559: xenobiotic-transporting ATPase activity1.66E-02
99GO:0008515: sucrose transmembrane transporter activity1.66E-02
100GO:0003746: translation elongation factor activity1.82E-02
101GO:0000049: tRNA binding1.83E-02
102GO:0015116: sulfate transmembrane transporter activity1.83E-02
103GO:0016787: hydrolase activity1.85E-02
104GO:0003993: acid phosphatase activity1.91E-02
105GO:0008422: beta-glucosidase activity1.99E-02
106GO:0004565: beta-galactosidase activity2.01E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity2.01E-02
108GO:0004089: carbonate dehydratase activity2.01E-02
109GO:0031072: heat shock protein binding2.01E-02
110GO:0003725: double-stranded RNA binding2.01E-02
111GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.18E-02
112GO:0008266: poly(U) RNA binding2.18E-02
113GO:0004185: serine-type carboxypeptidase activity2.35E-02
114GO:0051119: sugar transmembrane transporter activity2.37E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding2.55E-02
116GO:0042802: identical protein binding2.70E-02
117GO:0051536: iron-sulfur cluster binding2.76E-02
118GO:0031418: L-ascorbic acid binding2.76E-02
119GO:0015079: potassium ion transmembrane transporter activity2.96E-02
120GO:0047134: protein-disulfide reductase activity4.04E-02
121GO:0004812: aminoacyl-tRNA ligase activity4.04E-02
122GO:0050662: coenzyme binding4.73E-02
123GO:0004791: thioredoxin-disulfide reductase activity4.73E-02
124GO:0015299: solute:proton antiporter activity4.73E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0043235: receptor complex0.00E+00
5GO:0009507: chloroplast6.61E-47
6GO:0009535: chloroplast thylakoid membrane1.04E-31
7GO:0009534: chloroplast thylakoid7.85E-24
8GO:0009543: chloroplast thylakoid lumen8.99E-19
9GO:0009579: thylakoid1.35E-16
10GO:0031977: thylakoid lumen3.11E-14
11GO:0009941: chloroplast envelope2.00E-13
12GO:0009570: chloroplast stroma2.78E-13
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.72E-08
14GO:0031969: chloroplast membrane5.30E-07
15GO:0009654: photosystem II oxygen evolving complex8.62E-07
16GO:0019898: extrinsic component of membrane6.48E-06
17GO:0030095: chloroplast photosystem II9.76E-06
18GO:0010287: plastoglobule1.10E-05
19GO:0033281: TAT protein transport complex3.77E-05
20GO:0010007: magnesium chelatase complex3.77E-05
21GO:0030076: light-harvesting complex2.39E-04
22GO:0009515: granal stacked thylakoid5.03E-04
23GO:0005787: signal peptidase complex5.03E-04
24GO:0009344: nitrite reductase complex [NAD(P)H]5.03E-04
25GO:0009547: plastid ribosome5.03E-04
26GO:0031361: integral component of thylakoid membrane5.03E-04
27GO:0009522: photosystem I8.65E-04
28GO:0000427: plastid-encoded plastid RNA polymerase complex1.08E-03
29GO:0016459: myosin complex1.29E-03
30GO:0030658: transport vesicle membrane2.57E-03
31GO:0042651: thylakoid membrane3.37E-03
32GO:0009517: PSII associated light-harvesting complex II3.46E-03
33GO:0009523: photosystem II7.04E-03
34GO:0009501: amyloplast9.14E-03
35GO:0031982: vesicle9.14E-03
36GO:0010319: stromule9.74E-03
37GO:0005763: mitochondrial small ribosomal subunit1.19E-02
38GO:0000311: plastid large ribosomal subunit1.83E-02
39GO:0032040: small-subunit processome1.83E-02
40GO:0009508: plastid chromosome2.01E-02
41GO:0005840: ribosome2.56E-02
42GO:0048046: apoplast2.80E-02
43GO:0015935: small ribosomal subunit3.16E-02
44GO:0005773: vacuole3.36E-02
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Gene type



Gene DE type