co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03457

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0009733: response to auxin	2.07E-06
8	GO:0046620: regulation of organ growth	1.83E-05
9	GO:0040008: regulation of growth	1.10E-04
10	GO:0009734: auxin-activated signaling pathway	1.53E-04
11	GO:0016131: brassinosteroid metabolic process	1.61E-04
12	GO:0009686: gibberellin biosynthetic process	3.72E-04
13	GO:0032958: inositol phosphate biosynthetic process	4.21E-04
14	GO:0015904: tetracycline transport	4.21E-04
15	GO:0034757: negative regulation of iron ion transport	4.21E-04
16	GO:0000025: maltose catabolic process	4.21E-04
17	GO:0046520: sphingoid biosynthetic process	4.21E-04
18	GO:0009926: auxin polar transport	5.06E-04
19	GO:0010271: regulation of chlorophyll catabolic process	9.10E-04
20	GO:0001736: establishment of planar polarity	9.10E-04
21	GO:0009786: regulation of asymmetric cell division	9.10E-04
22	GO:0048829: root cap development	1.00E-03
23	GO:0080117: secondary growth	1.48E-03
24	GO:0071398: cellular response to fatty acid	1.48E-03
25	GO:0006065: UDP-glucuronate biosynthetic process	1.48E-03
26	GO:0048575: short-day photoperiodism, flowering	1.48E-03
27	GO:0090506: axillary shoot meristem initiation	1.48E-03
28	GO:0033591: response to L-ascorbic acid	1.48E-03
29	GO:0010371: regulation of gibberellin biosynthetic process	2.14E-03
30	GO:0006020: inositol metabolic process	2.14E-03
31	GO:0051513: regulation of monopolar cell growth	2.14E-03
32	GO:0051639: actin filament network formation	2.14E-03
33	GO:1990019: protein storage vacuole organization	2.14E-03
34	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.26E-03
35	GO:0006021: inositol biosynthetic process	2.88E-03
36	GO:0009755: hormone-mediated signaling pathway	2.88E-03
37	GO:0051764: actin crosslink formation	2.88E-03
38	GO:0071215: cellular response to abscisic acid stimulus	3.38E-03
39	GO:0009416: response to light stimulus	3.52E-03
40	GO:0048497: maintenance of floral organ identity	3.68E-03
41	GO:0010438: cellular response to sulfur starvation	3.68E-03
42	GO:0045487: gibberellin catabolic process	3.68E-03
43	GO:0010087: phloem or xylem histogenesis	4.31E-03
44	GO:1902456: regulation of stomatal opening	4.56E-03
45	GO:0048831: regulation of shoot system development	4.56E-03
46	GO:0003006: developmental process involved in reproduction	4.56E-03
47	GO:0010358: leaf shaping	4.56E-03
48	GO:0016554: cytidine to uridine editing	4.56E-03
49	GO:0009913: epidermal cell differentiation	4.56E-03
50	GO:0009741: response to brassinosteroid	4.65E-03
51	GO:0010268: brassinosteroid homeostasis	4.65E-03
52	GO:0006694: steroid biosynthetic process	5.49E-03
53	GO:0048509: regulation of meristem development	5.49E-03
54	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	5.49E-03
55	GO:0031930: mitochondria-nucleus signaling pathway	5.49E-03
56	GO:0016132: brassinosteroid biosynthetic process	5.75E-03
57	GO:0071554: cell wall organization or biogenesis	5.75E-03
58	GO:0032502: developmental process	6.14E-03
59	GO:0010098: suspensor development	6.49E-03
60	GO:0009740: gibberellic acid mediated signaling pathway	6.51E-03
61	GO:0009639: response to red or far red light	6.97E-03
62	GO:0010439: regulation of glucosinolate biosynthetic process	7.55E-03
63	GO:0009690: cytokinin metabolic process	7.55E-03
64	GO:0009704: de-etiolation	7.55E-03
65	GO:2000070: regulation of response to water deprivation	7.55E-03
66	GO:0000105: histidine biosynthetic process	7.55E-03
67	GO:0009819: drought recovery	7.55E-03
68	GO:0007186: G-protein coupled receptor signaling pathway	8.67E-03
69	GO:0016567: protein ubiquitination	9.30E-03
70	GO:0000373: Group II intron splicing	9.85E-03
71	GO:0048589: developmental growth	9.85E-03
72	GO:0009056: catabolic process	9.85E-03
73	GO:0048507: meristem development	9.85E-03
74	GO:0009638: phototropism	1.11E-02
75	GO:0010018: far-red light signaling pathway	1.11E-02
76	GO:1900865: chloroplast RNA modification	1.11E-02
77	GO:0000160: phosphorelay signal transduction system	1.15E-02
78	GO:0010311: lateral root formation	1.15E-02
79	GO:0009299: mRNA transcription	1.24E-02
80	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.24E-02
81	GO:0009641: shade avoidance	1.24E-02
82	GO:0006865: amino acid transport	1.32E-02
83	GO:0048765: root hair cell differentiation	1.37E-02
84	GO:0009682: induced systemic resistance	1.37E-02
85	GO:0006351: transcription, DNA-templated	1.38E-02
86	GO:0009867: jasmonic acid mediated signaling pathway	1.38E-02
87	GO:0010152: pollen maturation	1.51E-02
88	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.51E-02
89	GO:0006790: sulfur compound metabolic process	1.51E-02
90	GO:0005983: starch catabolic process	1.51E-02
91	GO:0010582: floral meristem determinacy	1.51E-02
92	GO:0009739: response to gibberellin	1.63E-02
93	GO:0010628: positive regulation of gene expression	1.65E-02
94	GO:0006006: glucose metabolic process	1.65E-02
95	GO:0009725: response to hormone	1.65E-02
96	GO:0009767: photosynthetic electron transport chain	1.65E-02
97	GO:0006631: fatty acid metabolic process	1.65E-02
98	GO:0010588: cotyledon vascular tissue pattern formation	1.65E-02
99	GO:0010102: lateral root morphogenesis	1.65E-02
100	GO:0009785: blue light signaling pathway	1.65E-02
101	GO:0010207: photosystem II assembly	1.80E-02
102	GO:0010223: secondary shoot formation	1.80E-02
103	GO:0009887: animal organ morphogenesis	1.80E-02
104	GO:0048467: gynoecium development	1.80E-02
105	GO:0042546: cell wall biogenesis	1.86E-02
106	GO:0090351: seedling development	1.95E-02
107	GO:0046854: phosphatidylinositol phosphorylation	1.95E-02
108	GO:0009636: response to toxic substance	2.01E-02
109	GO:0042753: positive regulation of circadian rhythm	2.11E-02
110	GO:0006863: purine nucleobase transport	2.11E-02
111	GO:0019762: glucosinolate catabolic process	2.11E-02
112	GO:0051017: actin filament bundle assembly	2.27E-02
113	GO:0005992: trehalose biosynthetic process	2.27E-02
114	GO:0009826: unidimensional cell growth	2.34E-02
115	GO:0009736: cytokinin-activated signaling pathway	2.41E-02
116	GO:0016114: terpenoid biosynthetic process	2.60E-02
117	GO:0003333: amino acid transmembrane transport	2.60E-02
118	GO:0010431: seed maturation	2.60E-02
119	GO:0009909: regulation of flower development	2.67E-02
120	GO:0010082: regulation of root meristem growth	2.96E-02
121	GO:0001944: vasculature development	2.96E-02
122	GO:0009625: response to insect	2.96E-02
123	GO:0009693: ethylene biosynthetic process	2.96E-02
124	GO:0048443: stamen development	3.14E-02
125	GO:0006284: base-excision repair	3.14E-02
126	GO:0070417: cellular response to cold	3.32E-02
127	GO:0000271: polysaccharide biosynthetic process	3.51E-02
128	GO:0080022: primary root development	3.51E-02
129	GO:0010118: stomatal movement	3.51E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	3.64E-02
131	GO:0010182: sugar mediated signaling pathway	3.70E-02
132	GO:0009960: endosperm development	3.70E-02
133	GO:0045489: pectin biosynthetic process	3.70E-02
134	GO:0010305: leaf vascular tissue pattern formation	3.70E-02
135	GO:0009958: positive gravitropism	3.70E-02
136	GO:0071555: cell wall organization	3.81E-02
137	GO:0048544: recognition of pollen	3.90E-02
138	GO:0007018: microtubule-based movement	3.90E-02
139	GO:0009646: response to absence of light	3.90E-02
140	GO:0045892: negative regulation of transcription, DNA-templated	4.09E-02
141	GO:0048825: cotyledon development	4.10E-02
142	GO:0019761: glucosinolate biosynthetic process	4.51E-02
143	GO:0010583: response to cyclopentenone	4.51E-02
144	GO:0006355: regulation of transcription, DNA-templated	4.63E-02
145	GO:1901657: glycosyl compound metabolic process	4.72E-02
146	GO:0007275: multicellular organism development	4.91E-02
147	GO:0009567: double fertilization forming a zygote and endosperm	4.93E-02
148	GO:0016125: sterol metabolic process	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0001872: (1->3)-beta-D-glucan binding	5.93E-05
6	GO:0010011: auxin binding	1.04E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	4.21E-04
8	GO:0008395: steroid hydroxylase activity	4.21E-04
9	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	4.21E-04
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.21E-04
11	GO:0010012: steroid 22-alpha hydroxylase activity	4.21E-04
12	GO:0000170: sphingosine hydroxylase activity	4.21E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	4.21E-04
14	GO:0000829: inositol heptakisphosphate kinase activity	4.21E-04
15	GO:0005227: calcium activated cation channel activity	4.21E-04
16	GO:0000828: inositol hexakisphosphate kinase activity	4.21E-04
17	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.26E-04
18	GO:0045543: gibberellin 2-beta-dioxygenase activity	9.10E-04
19	GO:0043425: bHLH transcription factor binding	9.10E-04
20	GO:0010296: prenylcysteine methylesterase activity	9.10E-04
21	GO:0052832: inositol monophosphate 3-phosphatase activity	9.10E-04
22	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.10E-04
23	GO:0008805: carbon-monoxide oxygenase activity	9.10E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	9.10E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	9.10E-04
26	GO:0008493: tetracycline transporter activity	9.10E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	9.10E-04
28	GO:0050736: O-malonyltransferase activity	9.10E-04
29	GO:0009884: cytokinin receptor activity	9.10E-04
30	GO:0005034: osmosensor activity	1.48E-03
31	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.48E-03
32	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.48E-03
33	GO:0045544: gibberellin 20-oxidase activity	2.14E-03
34	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.14E-03
35	GO:0005345: purine nucleobase transmembrane transporter activity	2.58E-03
36	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.88E-03
37	GO:0010328: auxin influx transmembrane transporter activity	2.88E-03
38	GO:0019199: transmembrane receptor protein kinase activity	2.88E-03
39	GO:0004871: signal transducer activity	3.18E-03
40	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.68E-03
41	GO:0008725: DNA-3-methyladenine glycosylase activity	3.68E-03
42	GO:0004709: MAP kinase kinase kinase activity	4.56E-03
43	GO:0000293: ferric-chelate reductase activity	4.56E-03
44	GO:0019900: kinase binding	5.49E-03
45	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.49E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.49E-03
47	GO:0016832: aldehyde-lyase activity	5.49E-03
48	GO:0016413: O-acetyltransferase activity	7.86E-03
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.69E-03
50	GO:0030247: polysaccharide binding	9.82E-03
51	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.85E-03
52	GO:0004673: protein histidine kinase activity	1.24E-02
53	GO:0004805: trehalose-phosphatase activity	1.24E-02
54	GO:0030234: enzyme regulator activity	1.24E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.26E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.38E-02
57	GO:0003677: DNA binding	1.45E-02
58	GO:0000155: phosphorelay sensor kinase activity	1.65E-02
59	GO:0003725: double-stranded RNA binding	1.65E-02
60	GO:0009055: electron carrier activity	1.70E-02
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.86E-02
62	GO:0003712: transcription cofactor activity	1.95E-02
63	GO:0008146: sulfotransferase activity	1.95E-02
64	GO:0046872: metal ion binding	2.13E-02
65	GO:0008134: transcription factor binding	2.27E-02
66	GO:0031418: L-ascorbic acid binding	2.27E-02
67	GO:0043424: protein histidine kinase binding	2.43E-02
68	GO:0033612: receptor serine/threonine kinase binding	2.60E-02
69	GO:0003964: RNA-directed DNA polymerase activity	2.60E-02
70	GO:0010333: terpene synthase activity	2.60E-02
71	GO:0003777: microtubule motor activity	2.67E-02
72	GO:0015171: amino acid transmembrane transporter activity	2.67E-02
73	GO:0016301: kinase activity	2.75E-02
74	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.78E-02
75	GO:0004672: protein kinase activity	2.89E-02
76	GO:0004674: protein serine/threonine kinase activity	2.99E-02
77	GO:0003727: single-stranded RNA binding	3.14E-02
78	GO:0016874: ligase activity	3.24E-02
79	GO:0015035: protein disulfide oxidoreductase activity	3.54E-02
80	GO:0005199: structural constituent of cell wall	3.70E-02
81	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.70E-02
82	GO:0050662: coenzyme binding	3.90E-02
83	GO:0042803: protein homodimerization activity	4.24E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.30E-02
85	GO:0004518: nuclease activity	4.51E-02
86	GO:0000156: phosphorelay response regulator activity	4.72E-02
87	GO:0051015: actin filament binding	4.72E-02
88	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.87E-02
89	GO:0016759: cellulose synthase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009986: cell surface	3.99E-04
4	GO:0030139: endocytic vesicle	1.48E-03
5	GO:0032585: multivesicular body membrane	2.14E-03
6	GO:0032432: actin filament bundle	2.14E-03
7	GO:0009654: photosystem II oxygen evolving complex	2.58E-03
8	GO:0009544: chloroplast ATP synthase complex	2.88E-03
9	GO:0019898: extrinsic component of membrane	5.36E-03
10	GO:0009501: amyloplast	7.55E-03
11	GO:0010494: cytoplasmic stress granule	9.85E-03
12	GO:0005884: actin filament	1.37E-02
13	GO:0005886: plasma membrane	1.45E-02
14	GO:0005578: proteinaceous extracellular matrix	1.65E-02
15	GO:0030095: chloroplast photosystem II	1.80E-02
16	GO:0046658: anchored component of plasma membrane	2.02E-02
17	GO:0005875: microtubule associated complex	2.11E-02
18	GO:0005634: nucleus	2.36E-02
19	GO:0009532: plastid stroma	2.60E-02
20	GO:0005871: kinesin complex	3.32E-02
21	GO:0009504: cell plate	4.10E-02