Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080149: sucrose induced translational repression0.00E+00
2GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
3GO:0051553: flavone biosynthetic process0.00E+00
4GO:1904250: positive regulation of age-related resistance0.00E+00
5GO:0010398: xylogalacturonan metabolic process0.00E+00
6GO:2000068: regulation of defense response to insect0.00E+00
7GO:0072722: response to amitrole0.00E+00
8GO:0006654: phosphatidic acid biosynthetic process0.00E+00
9GO:0006216: cytidine catabolic process0.00E+00
10GO:0052386: cell wall thickening0.00E+00
11GO:0019427: acetyl-CoA biosynthetic process from acetate0.00E+00
12GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress0.00E+00
13GO:0090400: stress-induced premature senescence0.00E+00
14GO:0006605: protein targeting7.53E-06
15GO:0080024: indolebutyric acid metabolic process3.17E-05
16GO:0051607: defense response to virus4.89E-05
17GO:0016192: vesicle-mediated transport1.84E-04
18GO:0006631: fatty acid metabolic process1.87E-04
19GO:1900057: positive regulation of leaf senescence2.33E-04
20GO:0055114: oxidation-reduction process2.59E-04
21GO:0009636: response to toxic substance2.62E-04
22GO:0006680: glucosylceramide catabolic process2.94E-04
23GO:0019478: D-amino acid catabolic process2.94E-04
24GO:0006083: acetate metabolic process2.94E-04
25GO:0010421: hydrogen peroxide-mediated programmed cell death2.94E-04
26GO:0051090: regulation of sequence-specific DNA binding transcription factor activity2.94E-04
27GO:0009620: response to fungus5.32E-04
28GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.45E-04
29GO:0080026: response to indolebutyric acid6.45E-04
30GO:0051252: regulation of RNA metabolic process6.45E-04
31GO:0015709: thiosulfate transport6.45E-04
32GO:0071422: succinate transmembrane transport6.45E-04
33GO:0006568: tryptophan metabolic process6.45E-04
34GO:0009805: coumarin biosynthetic process6.45E-04
35GO:0009816: defense response to bacterium, incompatible interaction6.48E-04
36GO:0015031: protein transport8.02E-04
37GO:0009407: toxin catabolic process9.53E-04
38GO:0061158: 3'-UTR-mediated mRNA destabilization1.04E-03
39GO:0002230: positive regulation of defense response to virus by host1.04E-03
40GO:0006556: S-adenosylmethionine biosynthetic process1.04E-03
41GO:0071398: cellular response to fatty acid1.04E-03
42GO:0072661: protein targeting to plasma membrane1.04E-03
43GO:0032504: multicellular organism reproduction1.04E-03
44GO:0010476: gibberellin mediated signaling pathway1.04E-03
45GO:0010325: raffinose family oligosaccharide biosynthetic process1.04E-03
46GO:0009410: response to xenobiotic stimulus1.04E-03
47GO:0010272: response to silver ion1.04E-03
48GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity1.04E-03
49GO:0009062: fatty acid catabolic process1.04E-03
50GO:0006886: intracellular protein transport1.21E-03
51GO:0046686: response to cadmium ion1.30E-03
52GO:0010150: leaf senescence1.39E-03
53GO:0042542: response to hydrogen peroxide1.48E-03
54GO:0009963: positive regulation of flavonoid biosynthetic process1.50E-03
55GO:1902290: positive regulation of defense response to oomycetes1.50E-03
56GO:0001676: long-chain fatty acid metabolic process1.50E-03
57GO:0000187: activation of MAPK activity1.50E-03
58GO:0070301: cellular response to hydrogen peroxide1.50E-03
59GO:0015729: oxaloacetate transport1.50E-03
60GO:0002239: response to oomycetes1.50E-03
61GO:0042742: defense response to bacterium1.50E-03
62GO:0051707: response to other organism1.56E-03
63GO:0009751: response to salicylic acid1.61E-03
64GO:0016998: cell wall macromolecule catabolic process1.68E-03
65GO:0009617: response to bacterium1.83E-03
66GO:0009814: defense response, incompatible interaction1.83E-03
67GO:0009693: ethylene biosynthetic process2.00E-03
68GO:0010188: response to microbial phytotoxin2.01E-03
69GO:0015867: ATP transport2.01E-03
70GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.01E-03
71GO:1902584: positive regulation of response to water deprivation2.01E-03
72GO:0006621: protein retention in ER lumen2.01E-03
73GO:1901002: positive regulation of response to salt stress2.01E-03
74GO:0010051: xylem and phloem pattern formation2.54E-03
75GO:0071423: malate transmembrane transport2.56E-03
76GO:0046283: anthocyanin-containing compound metabolic process2.56E-03
77GO:0006564: L-serine biosynthetic process2.56E-03
78GO:0097428: protein maturation by iron-sulfur cluster transfer2.56E-03
79GO:0045927: positive regulation of growth2.56E-03
80GO:0006662: glycerol ether metabolic process2.74E-03
81GO:0045489: pectin biosynthetic process2.74E-03
82GO:0009651: response to salt stress3.04E-03
83GO:0035435: phosphate ion transmembrane transport3.16E-03
84GO:0009972: cytidine deamination3.16E-03
85GO:0009759: indole glucosinolate biosynthetic process3.16E-03
86GO:0015866: ADP transport3.16E-03
87GO:0006555: methionine metabolic process3.16E-03
88GO:0006623: protein targeting to vacuole3.16E-03
89GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.16E-03
90GO:0060918: auxin transport3.16E-03
91GO:0010193: response to ozone3.38E-03
92GO:0006635: fatty acid beta-oxidation3.38E-03
93GO:0009099: valine biosynthetic process3.81E-03
94GO:0080113: regulation of seed growth3.81E-03
95GO:0048444: floral organ morphogenesis3.81E-03
96GO:0019509: L-methionine salvage from methylthioadenosine3.81E-03
97GO:0030643: cellular phosphate ion homeostasis3.81E-03
98GO:0009082: branched-chain amino acid biosynthetic process3.81E-03
99GO:0034389: lipid particle organization3.81E-03
100GO:0017148: negative regulation of translation3.81E-03
101GO:0008272: sulfate transport4.49E-03
102GO:0050829: defense response to Gram-negative bacterium4.49E-03
103GO:1902074: response to salt4.49E-03
104GO:0006744: ubiquinone biosynthetic process4.49E-03
105GO:0080186: developmental vegetative growth4.49E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.49E-03
107GO:0071669: plant-type cell wall organization or biogenesis4.49E-03
108GO:0006102: isocitrate metabolic process5.21E-03
109GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.21E-03
110GO:0009819: drought recovery5.21E-03
111GO:0043068: positive regulation of programmed cell death5.21E-03
112GO:0010417: glucuronoxylan biosynthetic process5.98E-03
113GO:0009097: isoleucine biosynthetic process5.98E-03
114GO:0030968: endoplasmic reticulum unfolded protein response5.98E-03
115GO:0009699: phenylpropanoid biosynthetic process5.98E-03
116GO:0006002: fructose 6-phosphate metabolic process5.98E-03
117GO:0009657: plastid organization5.98E-03
118GO:0009056: catabolic process6.77E-03
119GO:0015780: nucleotide-sugar transport6.77E-03
120GO:0009835: fruit ripening6.77E-03
121GO:0010043: response to zinc ion7.37E-03
122GO:0008202: steroid metabolic process7.60E-03
123GO:1900426: positive regulation of defense response to bacterium7.60E-03
124GO:0009098: leucine biosynthetic process7.60E-03
125GO:0034599: cellular response to oxidative stress8.45E-03
126GO:0006099: tricarboxylic acid cycle8.45E-03
127GO:0000103: sulfate assimilation8.48E-03
128GO:0006032: chitin catabolic process8.48E-03
129GO:0006839: mitochondrial transport9.22E-03
130GO:0000272: polysaccharide catabolic process9.38E-03
131GO:0071365: cellular response to auxin stimulus1.03E-02
132GO:0000209: protein polyubiquitination1.09E-02
133GO:0010102: lateral root morphogenesis1.13E-02
134GO:0055046: microgametogenesis1.13E-02
135GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.13E-02
136GO:0009266: response to temperature stimulus1.23E-02
137GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.27E-02
138GO:0090351: seedling development1.33E-02
139GO:0010053: root epidermal cell differentiation1.33E-02
140GO:0007030: Golgi organization1.33E-02
141GO:0034976: response to endoplasmic reticulum stress1.44E-02
142GO:0000162: tryptophan biosynthetic process1.44E-02
143GO:0009863: salicylic acid mediated signaling pathway1.55E-02
144GO:0006979: response to oxidative stress1.57E-02
145GO:0010073: meristem maintenance1.66E-02
146GO:0008299: isoprenoid biosynthetic process1.66E-02
147GO:0006874: cellular calcium ion homeostasis1.66E-02
148GO:0019915: lipid storage1.78E-02
149GO:0009269: response to desiccation1.78E-02
150GO:0030433: ubiquitin-dependent ERAD pathway1.90E-02
151GO:0006730: one-carbon metabolic process1.90E-02
152GO:0019748: secondary metabolic process1.90E-02
153GO:0030245: cellulose catabolic process1.90E-02
154GO:0010227: floral organ abscission2.02E-02
155GO:0045454: cell redox homeostasis2.06E-02
156GO:0009561: megagametogenesis2.14E-02
157GO:0009306: protein secretion2.14E-02
158GO:0016117: carotenoid biosynthetic process2.27E-02
159GO:0042631: cellular response to water deprivation2.40E-02
160GO:0016042: lipid catabolic process2.58E-02
161GO:0002229: defense response to oomycetes2.94E-02
162GO:0000302: response to reactive oxygen species2.94E-02
163GO:0016032: viral process3.08E-02
164GO:0071281: cellular response to iron ion3.22E-02
165GO:1901657: glycosyl compound metabolic process3.22E-02
166GO:0019760: glucosinolate metabolic process3.37E-02
167GO:0006464: cellular protein modification process3.37E-02
168GO:0045490: pectin catabolic process3.48E-02
169GO:0009615: response to virus3.82E-02
170GO:0010029: regulation of seed germination3.97E-02
171GO:0006906: vesicle fusion4.13E-02
172GO:0009627: systemic acquired resistance4.13E-02
173GO:0010468: regulation of gene expression4.14E-02
174GO:0006888: ER to Golgi vesicle-mediated transport4.29E-02
175GO:0009414: response to water deprivation4.42E-02
176GO:0016311: dephosphorylation4.44E-02
177GO:0009817: defense response to fungus, incompatible interaction4.61E-02
178GO:0048767: root hair elongation4.77E-02
179GO:0009813: flavonoid biosynthetic process4.77E-02
180GO:0006499: N-terminal protein myristoylation4.94E-02
RankGO TermAdjusted P value
1GO:0005046: KDEL sequence binding0.00E+00
2GO:0051499: D-aminoacyl-tRNA deacylase activity0.00E+00
3GO:0016504: peptidase activator activity0.00E+00
4GO:0034338: short-chain carboxylesterase activity0.00E+00
5GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
6GO:0016229: steroid dehydrogenase activity0.00E+00
7GO:0033759: flavone synthase activity0.00E+00
8GO:0070577: lysine-acetylated histone binding0.00E+00
9GO:0070401: NADP+ binding0.00E+00
10GO:0047844: deoxycytidine deaminase activity0.00E+00
11GO:0008320: protein transmembrane transporter activity4.97E-06
12GO:0102391: decanoate--CoA ligase activity1.78E-04
13GO:0043295: glutathione binding2.33E-04
14GO:0004467: long-chain fatty acid-CoA ligase activity2.33E-04
15GO:0030942: endoplasmic reticulum signal peptide binding2.94E-04
16GO:0004033: aldo-keto reductase (NADP) activity2.94E-04
17GO:2001147: camalexin binding2.94E-04
18GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity2.94E-04
19GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.94E-04
20GO:0010179: IAA-Ala conjugate hydrolase activity2.94E-04
21GO:2001227: quercitrin binding2.94E-04
22GO:0003987: acetate-CoA ligase activity2.94E-04
23GO:0004425: indole-3-glycerol-phosphate synthase activity2.94E-04
24GO:0004348: glucosylceramidase activity2.94E-04
25GO:0004630: phospholipase D activity3.62E-04
26GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.62E-04
27GO:1901677: phosphate transmembrane transporter activity6.45E-04
28GO:0015117: thiosulfate transmembrane transporter activity6.45E-04
29GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity6.45E-04
30GO:0010331: gibberellin binding6.45E-04
31GO:0010297: heteropolysaccharide binding6.45E-04
32GO:0004617: phosphoglycerate dehydrogenase activity6.45E-04
33GO:0050347: trans-octaprenyltranstransferase activity6.45E-04
34GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity6.45E-04
35GO:0008428: ribonuclease inhibitor activity6.45E-04
36GO:1990585: hydroxyproline O-arabinosyltransferase activity6.45E-04
37GO:0004478: methionine adenosyltransferase activity1.04E-03
38GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.04E-03
39GO:0005310: dicarboxylic acid transmembrane transporter activity1.04E-03
40GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.04E-03
41GO:0015141: succinate transmembrane transporter activity1.04E-03
42GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.13E-03
43GO:0031418: L-ascorbic acid binding1.39E-03
44GO:0004364: glutathione transferase activity1.48E-03
45GO:0005460: UDP-glucose transmembrane transporter activity1.50E-03
46GO:0004449: isocitrate dehydrogenase (NAD+) activity1.50E-03
47GO:0016656: monodehydroascorbate reductase (NADH) activity1.50E-03
48GO:0052656: L-isoleucine transaminase activity1.50E-03
49GO:0008106: alcohol dehydrogenase (NADP+) activity1.50E-03
50GO:0004165: dodecenoyl-CoA delta-isomerase activity1.50E-03
51GO:0052654: L-leucine transaminase activity1.50E-03
52GO:0017077: oxidative phosphorylation uncoupler activity1.50E-03
53GO:0052655: L-valine transaminase activity1.50E-03
54GO:0015131: oxaloacetate transmembrane transporter activity1.50E-03
55GO:0005198: structural molecule activity1.81E-03
56GO:0009916: alternative oxidase activity2.01E-03
57GO:0004659: prenyltransferase activity2.01E-03
58GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.01E-03
59GO:0046923: ER retention sequence binding2.01E-03
60GO:0070628: proteasome binding2.01E-03
61GO:0004084: branched-chain-amino-acid transaminase activity2.01E-03
62GO:0047134: protein-disulfide reductase activity2.35E-03
63GO:0004040: amidase activity2.56E-03
64GO:0005459: UDP-galactose transmembrane transporter activity2.56E-03
65GO:0008948: oxaloacetate decarboxylase activity2.56E-03
66GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.56E-03
67GO:0004623: phospholipase A2 activity2.56E-03
68GO:0004791: thioredoxin-disulfide reductase activity2.94E-03
69GO:0035252: UDP-xylosyltransferase activity3.16E-03
70GO:0016208: AMP binding3.16E-03
71GO:0015035: protein disulfide oxidoreductase activity3.70E-03
72GO:0005347: ATP transmembrane transporter activity3.81E-03
73GO:0004656: procollagen-proline 4-dioxygenase activity3.81E-03
74GO:0015217: ADP transmembrane transporter activity3.81E-03
75GO:0004126: cytidine deaminase activity3.81E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.85E-03
77GO:0003872: 6-phosphofructokinase activity4.49E-03
78GO:0015140: malate transmembrane transporter activity4.49E-03
79GO:0004708: MAP kinase kinase activity5.21E-03
80GO:0004714: transmembrane receptor protein tyrosine kinase activity5.21E-03
81GO:0008312: 7S RNA binding5.21E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity5.21E-03
83GO:0004806: triglyceride lipase activity5.75E-03
84GO:0008142: oxysterol binding5.98E-03
85GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.77E-03
86GO:0004568: chitinase activity8.48E-03
87GO:0004161: dimethylallyltranstransferase activity9.38E-03
88GO:0045551: cinnamyl-alcohol dehydrogenase activity1.03E-02
89GO:0015116: sulfate transmembrane transporter activity1.03E-02
90GO:0031624: ubiquitin conjugating enzyme binding1.23E-02
91GO:0004601: peroxidase activity1.25E-02
92GO:0004970: ionotropic glutamate receptor activity1.33E-02
93GO:0005217: intracellular ligand-gated ion channel activity1.33E-02
94GO:0008061: chitin binding1.33E-02
95GO:0003712: transcription cofactor activity1.33E-02
96GO:0051536: iron-sulfur cluster binding1.55E-02
97GO:0031625: ubiquitin protein ligase binding1.56E-02
98GO:0046872: metal ion binding1.70E-02
99GO:0061630: ubiquitin protein ligase activity1.75E-02
100GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.90E-02
101GO:0008810: cellulase activity2.02E-02
102GO:0043565: sequence-specific DNA binding2.10E-02
103GO:0003727: single-stranded RNA binding2.14E-02
104GO:0003756: protein disulfide isomerase activity2.14E-02
105GO:0005102: receptor binding2.27E-02
106GO:0001085: RNA polymerase II transcription factor binding2.53E-02
107GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.59E-02
108GO:0010181: FMN binding2.66E-02
109GO:0004872: receptor activity2.80E-02
110GO:0015297: antiporter activity3.32E-02
111GO:0016791: phosphatase activity3.37E-02
112GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.51E-02
113GO:0008237: metallopeptidase activity3.51E-02
114GO:0008483: transaminase activity3.51E-02
115GO:0016722: oxidoreductase activity, oxidizing metal ions3.51E-02
116GO:0016597: amino acid binding3.66E-02
117GO:0051213: dioxygenase activity3.82E-02
118GO:0102483: scopolin beta-glucosidase activity4.29E-02
119GO:0016887: ATPase activity4.60E-02
RankGO TermAdjusted P value
1GO:0046862: chromoplast membrane0.00E+00
2GO:0005789: endoplasmic reticulum membrane5.80E-07
3GO:0005794: Golgi apparatus1.04E-05
4GO:0005783: endoplasmic reticulum1.99E-05
5GO:0005886: plasma membrane4.27E-05
6GO:0005801: cis-Golgi network1.78E-04
7GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane2.33E-04
8GO:0045252: oxoglutarate dehydrogenase complex2.94E-04
9GO:0031901: early endosome membrane4.36E-04
10GO:0017119: Golgi transport complex6.02E-04
11GO:0030134: ER to Golgi transport vesicle6.45E-04
12GO:0005829: cytosol7.35E-04
13GO:0005737: cytoplasm1.15E-03
14GO:0005768: endosome1.19E-03
15GO:0030658: transport vesicle membrane1.50E-03
16GO:0016021: integral component of membrane2.13E-03
17GO:0005945: 6-phosphofructokinase complex2.56E-03
18GO:0005802: trans-Golgi network3.09E-03
19GO:0030173: integral component of Golgi membrane3.81E-03
20GO:0032580: Golgi cisterna membrane4.09E-03
21GO:0009986: cell surface4.49E-03
22GO:0009506: plasmodesma4.71E-03
23GO:0005623: cell4.91E-03
24GO:0005788: endoplasmic reticulum lumen5.16E-03
25GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.98E-03
26GO:0005811: lipid particle5.98E-03
27GO:0009514: glyoxysome5.98E-03
28GO:0005779: integral component of peroxisomal membrane5.98E-03
29GO:0030665: clathrin-coated vesicle membrane7.60E-03
30GO:0030176: integral component of endoplasmic reticulum membrane1.33E-02
31GO:0070469: respiratory chain1.66E-02
32GO:0005839: proteasome core complex1.78E-02
33GO:0031410: cytoplasmic vesicle1.90E-02
34GO:0019898: extrinsic component of membrane2.80E-02
35GO:0009504: cell plate2.80E-02
36GO:0016592: mediator complex3.08E-02
37GO:0031225: anchored component of membrane3.14E-02
38GO:0071944: cell periphery3.22E-02
39GO:0005667: transcription factor complex4.13E-02
40GO:0046658: anchored component of plasma membrane4.59E-02
41GO:0000151: ubiquitin ligase complex4.61E-02
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Gene type



Gene DE type