co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0015882: L-ascorbic acid transport	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0071474: cellular hyperosmotic response	0.00E+00
12	GO:1901259: chloroplast rRNA processing	2.10E-06
13	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.96E-06
14	GO:0009658: chloroplast organization	5.70E-05
15	GO:0009955: adaxial/abaxial pattern specification	1.41E-04
16	GO:0006353: DNA-templated transcription, termination	2.35E-04
17	GO:0043686: co-translational protein modification	2.53E-04
18	GO:0010028: xanthophyll cycle	2.53E-04
19	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.53E-04
20	GO:0000476: maturation of 4.5S rRNA	2.53E-04
21	GO:0009443: pyridoxal 5'-phosphate salvage	2.53E-04
22	GO:0000967: rRNA 5'-end processing	2.53E-04
23	GO:0080112: seed growth	2.53E-04
24	GO:1905039: carboxylic acid transmembrane transport	2.53E-04
25	GO:1905200: gibberellic acid transmembrane transport	2.53E-04
26	GO:0043953: protein transport by the Tat complex	2.53E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.53E-04
28	GO:0010063: positive regulation of trichoblast fate specification	2.53E-04
29	GO:0006659: phosphatidylserine biosynthetic process	2.53E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.53E-04
31	GO:0065002: intracellular protein transmembrane transport	2.53E-04
32	GO:0019252: starch biosynthetic process	2.56E-04
33	GO:0009657: plastid organization	2.90E-04
34	GO:0032502: developmental process	3.07E-04
35	GO:0001682: tRNA 5'-leader removal	5.59E-04
36	GO:0006568: tryptophan metabolic process	5.59E-04
37	GO:0051262: protein tetramerization	5.59E-04
38	GO:0034470: ncRNA processing	5.59E-04
39	GO:0018026: peptidyl-lysine monomethylation	5.59E-04
40	GO:0000256: allantoin catabolic process	5.59E-04
41	GO:1904143: positive regulation of carotenoid biosynthetic process	5.59E-04
42	GO:0019684: photosynthesis, light reaction	5.62E-04
43	GO:0009773: photosynthetic electron transport in photosystem I	5.62E-04
44	GO:0015995: chlorophyll biosynthetic process	5.64E-04
45	GO:0009416: response to light stimulus	7.87E-04
46	GO:0005977: glycogen metabolic process	9.07E-04
47	GO:0006954: inflammatory response	9.07E-04
48	GO:0010136: ureide catabolic process	9.07E-04
49	GO:0006166: purine ribonucleoside salvage	1.29E-03
50	GO:0010071: root meristem specification	1.29E-03
51	GO:0009102: biotin biosynthetic process	1.29E-03
52	GO:0009152: purine ribonucleotide biosynthetic process	1.29E-03
53	GO:0046653: tetrahydrofolate metabolic process	1.29E-03
54	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.29E-03
55	GO:0010306: rhamnogalacturonan II biosynthetic process	1.29E-03
56	GO:0006145: purine nucleobase catabolic process	1.29E-03
57	GO:0051016: barbed-end actin filament capping	1.29E-03
58	GO:0016556: mRNA modification	1.29E-03
59	GO:0006168: adenine salvage	1.29E-03
60	GO:0010109: regulation of photosynthesis	1.73E-03
61	GO:0009765: photosynthesis, light harvesting	1.73E-03
62	GO:0010107: potassium ion import	1.73E-03
63	GO:0006221: pyrimidine nucleotide biosynthetic process	1.73E-03
64	GO:0006021: inositol biosynthetic process	1.73E-03
65	GO:0010021: amylopectin biosynthetic process	1.73E-03
66	GO:0055114: oxidation-reduction process	1.97E-03
67	GO:0031365: N-terminal protein amino acid modification	2.21E-03
68	GO:0044209: AMP salvage	2.21E-03
69	GO:0032543: mitochondrial translation	2.21E-03
70	GO:0098719: sodium ion import across plasma membrane	2.21E-03
71	GO:0006564: L-serine biosynthetic process	2.21E-03
72	GO:0048367: shoot system development	2.22E-03
73	GO:0009646: response to absence of light	2.37E-03
74	GO:0008654: phospholipid biosynthetic process	2.54E-03
75	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.72E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.72E-03
77	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.72E-03
78	GO:0032973: amino acid export	2.72E-03
79	GO:0000741: karyogamy	2.72E-03
80	GO:0050665: hydrogen peroxide biosynthetic process	2.72E-03
81	GO:0009854: oxidative photosynthetic carbon pathway	3.27E-03
82	GO:0080086: stamen filament development	3.27E-03
83	GO:0071470: cellular response to osmotic stress	3.27E-03
84	GO:0048280: vesicle fusion with Golgi apparatus	3.27E-03
85	GO:0010189: vitamin E biosynthetic process	3.27E-03
86	GO:0043090: amino acid import	3.86E-03
87	GO:0051693: actin filament capping	3.86E-03
88	GO:0048437: floral organ development	3.86E-03
89	GO:0009769: photosynthesis, light harvesting in photosystem II	3.86E-03
90	GO:0009645: response to low light intensity stimulus	3.86E-03
91	GO:0010027: thylakoid membrane organization	3.92E-03
92	GO:0055075: potassium ion homeostasis	4.48E-03
93	GO:0052543: callose deposition in cell wall	4.48E-03
94	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.48E-03
95	GO:0042255: ribosome assembly	4.48E-03
96	GO:0046620: regulation of organ growth	4.48E-03
97	GO:0006605: protein targeting	4.48E-03
98	GO:0010078: maintenance of root meristem identity	4.48E-03
99	GO:0018298: protein-chromophore linkage	5.11E-03
100	GO:0043562: cellular response to nitrogen levels	5.13E-03
101	GO:0010204: defense response signaling pathway, resistance gene-independent	5.13E-03
102	GO:0032544: plastid translation	5.13E-03
103	GO:0000902: cell morphogenesis	5.81E-03
104	GO:0098656: anion transmembrane transport	5.81E-03
105	GO:0046685: response to arsenic-containing substance	5.81E-03
106	GO:0009821: alkaloid biosynthetic process	5.81E-03
107	GO:0080144: amino acid homeostasis	5.81E-03
108	GO:0090333: regulation of stomatal closure	5.81E-03
109	GO:0051453: regulation of intracellular pH	6.52E-03
110	GO:0005982: starch metabolic process	6.52E-03
111	GO:0006779: porphyrin-containing compound biosynthetic process	6.52E-03
112	GO:0034599: cellular response to oxidative stress	6.77E-03
113	GO:0006896: Golgi to vacuole transport	7.26E-03
114	GO:0006782: protoporphyrinogen IX biosynthetic process	7.26E-03
115	GO:0009684: indoleacetic acid biosynthetic process	8.04E-03
116	GO:0009089: lysine biosynthetic process via diaminopimelate	8.04E-03
117	GO:0072593: reactive oxygen species metabolic process	8.04E-03
118	GO:0015770: sucrose transport	8.04E-03
119	GO:0030036: actin cytoskeleton organization	9.66E-03
120	GO:0009718: anthocyanin-containing compound biosynthetic process	9.66E-03
121	GO:0009767: photosynthetic electron transport chain	9.66E-03
122	GO:0010588: cotyledon vascular tissue pattern formation	9.66E-03
123	GO:0010628: positive regulation of gene expression	9.66E-03
124	GO:0048467: gynoecium development	1.05E-02
125	GO:0007015: actin filament organization	1.05E-02
126	GO:0009901: anther dehiscence	1.14E-02
127	GO:0019853: L-ascorbic acid biosynthetic process	1.14E-02
128	GO:0010030: positive regulation of seed germination	1.14E-02
129	GO:0008299: isoprenoid biosynthetic process	1.42E-02
130	GO:0006418: tRNA aminoacylation for protein translation	1.42E-02
131	GO:0009768: photosynthesis, light harvesting in photosystem I	1.42E-02
132	GO:0015979: photosynthesis	1.46E-02
133	GO:0019915: lipid storage	1.52E-02
134	GO:0009269: response to desiccation	1.52E-02
135	GO:0030245: cellulose catabolic process	1.62E-02
136	GO:0006012: galactose metabolic process	1.72E-02
137	GO:0009686: gibberellin biosynthetic process	1.72E-02
138	GO:0042127: regulation of cell proliferation	1.83E-02
139	GO:0009306: protein secretion	1.83E-02
140	GO:0016117: carotenoid biosynthetic process	1.94E-02
141	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.94E-02
142	GO:0042147: retrograde transport, endosome to Golgi	1.94E-02
143	GO:0010087: phloem or xylem histogenesis	2.05E-02
144	GO:0042631: cellular response to water deprivation	2.05E-02
145	GO:0080022: primary root development	2.05E-02
146	GO:0008033: tRNA processing	2.05E-02
147	GO:0009058: biosynthetic process	2.13E-02
148	GO:0005975: carbohydrate metabolic process	2.15E-02
149	GO:0048868: pollen tube development	2.16E-02
150	GO:0009741: response to brassinosteroid	2.16E-02
151	GO:0010268: brassinosteroid homeostasis	2.16E-02
152	GO:0009958: positive gravitropism	2.16E-02
153	GO:0006885: regulation of pH	2.16E-02
154	GO:0071472: cellular response to salt stress	2.16E-02
155	GO:0010305: leaf vascular tissue pattern formation	2.16E-02
156	GO:0006662: glycerol ether metabolic process	2.16E-02
157	GO:0010197: polar nucleus fusion	2.16E-02
158	GO:0006814: sodium ion transport	2.27E-02
159	GO:0009851: auxin biosynthetic process	2.39E-02
160	GO:0006623: protein targeting to vacuole	2.39E-02
161	GO:0009791: post-embryonic development	2.39E-02
162	GO:0048825: cotyledon development	2.39E-02
163	GO:0016132: brassinosteroid biosynthetic process	2.51E-02
164	GO:0071554: cell wall organization or biogenesis	2.51E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	2.51E-02
166	GO:1901657: glycosyl compound metabolic process	2.75E-02
167	GO:0010090: trichome morphogenesis	2.75E-02
168	GO:0009567: double fertilization forming a zygote and endosperm	2.87E-02
169	GO:0016125: sterol metabolic process	2.87E-02
170	GO:0008380: RNA splicing	3.33E-02
171	GO:0006888: ER to Golgi vesicle-mediated transport	3.66E-02
172	GO:0048481: plant ovule development	3.93E-02
173	GO:0009813: flavonoid biosynthetic process	4.08E-02
174	GO:0010218: response to far red light	4.22E-02
175	GO:0048527: lateral root development	4.36E-02
176	GO:0006865: amino acid transport	4.51E-02
177	GO:0006970: response to osmotic stress	4.63E-02
178	GO:0009637: response to blue light	4.66E-02
179	GO:0009853: photorespiration	4.66E-02
180	GO:0016051: carbohydrate biosynthetic process	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0010276: phytol kinase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0070402: NADPH binding	1.07E-05
10	GO:0009011: starch synthase activity	4.39E-05
11	GO:0004033: aldo-keto reductase (NADP) activity	2.35E-04
12	GO:0005227: calcium activated cation channel activity	2.53E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.53E-04
14	GO:1905201: gibberellin transmembrane transporter activity	2.53E-04
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.53E-04
16	GO:0051777: ent-kaurenoate oxidase activity	2.53E-04
17	GO:0004856: xylulokinase activity	2.53E-04
18	GO:0042586: peptide deformylase activity	2.53E-04
19	GO:0005080: protein kinase C binding	2.53E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.53E-04
21	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.59E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.59E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	5.59E-04
24	GO:0033201: alpha-1,4-glucan synthase activity	5.59E-04
25	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.59E-04
26	GO:0019156: isoamylase activity	5.59E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.59E-04
28	GO:0004512: inositol-3-phosphate synthase activity	5.59E-04
29	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.07E-04
30	GO:0008864: formyltetrahydrofolate deformylase activity	9.07E-04
31	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.07E-04
32	GO:0004373: glycogen (starch) synthase activity	9.07E-04
33	GO:0003913: DNA photolyase activity	9.07E-04
34	GO:0002161: aminoacyl-tRNA editing activity	9.07E-04
35	GO:0004848: ureidoglycolate hydrolase activity	9.07E-04
36	GO:0004148: dihydrolipoyl dehydrogenase activity	9.07E-04
37	GO:0004751: ribose-5-phosphate isomerase activity	9.07E-04
38	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.29E-03
39	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.29E-03
40	GO:0009041: uridylate kinase activity	1.29E-03
41	GO:0003999: adenine phosphoribosyltransferase activity	1.29E-03
42	GO:0003883: CTP synthase activity	1.29E-03
43	GO:0016851: magnesium chelatase activity	1.29E-03
44	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.29E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	1.73E-03
46	GO:0004045: aminoacyl-tRNA hydrolase activity	1.73E-03
47	GO:0080032: methyl jasmonate esterase activity	1.73E-03
48	GO:0045430: chalcone isomerase activity	1.73E-03
49	GO:0043495: protein anchor	1.73E-03
50	GO:0008891: glycolate oxidase activity	1.73E-03
51	GO:0008514: organic anion transmembrane transporter activity	1.75E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	1.99E-03
53	GO:0016846: carbon-sulfur lyase activity	2.21E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.21E-03
55	GO:0005275: amine transmembrane transporter activity	2.21E-03
56	GO:0004605: phosphatidate cytidylyltransferase activity	2.72E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	2.72E-03
58	GO:0004526: ribonuclease P activity	2.72E-03
59	GO:0004556: alpha-amylase activity	2.72E-03
60	GO:0015081: sodium ion transmembrane transporter activity	2.72E-03
61	GO:0008195: phosphatidate phosphatase activity	3.27E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.27E-03
63	GO:0005261: cation channel activity	3.27E-03
64	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.27E-03
65	GO:0019843: rRNA binding	3.58E-03
66	GO:0019899: enzyme binding	3.86E-03
67	GO:0016168: chlorophyll binding	4.15E-03
68	GO:0016844: strictosidine synthase activity	6.52E-03
69	GO:0015020: glucuronosyltransferase activity	7.26E-03
70	GO:0008559: xenobiotic-transporting ATPase activity	8.04E-03
71	GO:0015386: potassium:proton antiporter activity	8.04E-03
72	GO:0008515: sucrose transmembrane transporter activity	8.04E-03
73	GO:0003725: double-stranded RNA binding	9.66E-03
74	GO:0004022: alcohol dehydrogenase (NAD) activity	9.66E-03
75	GO:0005315: inorganic phosphate transmembrane transporter activity	9.66E-03
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.05E-02
77	GO:0051119: sugar transmembrane transporter activity	1.14E-02
78	GO:0031409: pigment binding	1.23E-02
79	GO:0015171: amino acid transmembrane transporter activity	1.25E-02
80	GO:0003723: RNA binding	1.44E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	1.72E-02
82	GO:0008810: cellulase activity	1.72E-02
83	GO:0003727: single-stranded RNA binding	1.83E-02
84	GO:0047134: protein-disulfide reductase activity	1.94E-02
85	GO:0004812: aminoacyl-tRNA ligase activity	1.94E-02
86	GO:0003713: transcription coactivator activity	2.16E-02
87	GO:0008080: N-acetyltransferase activity	2.16E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-02
89	GO:0016853: isomerase activity	2.27E-02
90	GO:0010181: FMN binding	2.27E-02
91	GO:0008565: protein transporter activity	2.42E-02
92	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
93	GO:0015385: sodium:proton antiporter activity	2.75E-02
94	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.00E-02
95	GO:0008237: metallopeptidase activity	3.00E-02
96	GO:0016413: O-acetyltransferase activity	3.13E-02
97	GO:0016597: amino acid binding	3.13E-02
98	GO:0008375: acetylglucosaminyltransferase activity	3.52E-02
99	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
100	GO:0003824: catalytic activity	3.80E-02
101	GO:0015238: drug transmembrane transporter activity	4.08E-02
102	GO:0004222: metalloendopeptidase activity	4.22E-02
103	GO:0004601: peroxidase activity	4.30E-02
104	GO:0030145: manganese ion binding	4.36E-02
105	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.36E-02
106	GO:0003993: acid phosphatase activity	4.80E-02
107	GO:0000149: SNARE binding	4.95E-02
108	GO:0008422: beta-glucosidase activity	4.95E-02
109	GO:0050660: flavin adenine dinucleotide binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	3.65E-18
3	GO:0009570: chloroplast stroma	2.22E-08
4	GO:0009535: chloroplast thylakoid membrane	8.35E-06
5	GO:0033281: TAT protein transport complex	1.07E-05
6	GO:0009295: nucleoid	2.84E-05
7	GO:0009508: plastid chromosome	3.71E-05
8	GO:0031361: integral component of thylakoid membrane	2.53E-04
9	GO:0009344: nitrite reductase complex [NAD(P)H]	2.53E-04
10	GO:0008290: F-actin capping protein complex	5.59E-04
11	GO:0010007: magnesium chelatase complex	9.07E-04
12	GO:0042646: plastid nucleoid	1.29E-03
13	GO:0030658: transport vesicle membrane	1.29E-03
14	GO:0009517: PSII associated light-harvesting complex II	1.73E-03
15	GO:0009523: photosystem II	2.54E-03
16	GO:0031969: chloroplast membrane	2.69E-03
17	GO:0009706: chloroplast inner membrane	2.69E-03
18	GO:0009534: chloroplast thylakoid	4.28E-03
19	GO:0012507: ER to Golgi transport vesicle membrane	4.48E-03
20	GO:0009501: amyloplast	4.48E-03
21	GO:0005763: mitochondrial small ribosomal subunit	5.81E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.81E-03
23	GO:0042644: chloroplast nucleoid	5.81E-03
24	GO:0048471: perinuclear region of cytoplasm	8.04E-03
25	GO:0030095: chloroplast photosystem II	1.05E-02
26	GO:0030076: light-harvesting complex	1.14E-02
27	GO:0009654: photosystem II oxygen evolving complex	1.42E-02
28	GO:0042651: thylakoid membrane	1.42E-02
29	GO:0009579: thylakoid	1.52E-02
30	GO:0010287: plastoglobule	1.91E-02
31	GO:0009543: chloroplast thylakoid lumen	2.02E-02
32	GO:0009522: photosystem I	2.27E-02
33	GO:0019898: extrinsic component of membrane	2.39E-02
34	GO:0016021: integral component of membrane	2.46E-02
35	GO:0009941: chloroplast envelope	2.56E-02
36	GO:0016020: membrane	2.79E-02
37	GO:0030529: intracellular ribonucleoprotein complex	3.26E-02
38	GO:0000325: plant-type vacuole	4.36E-02
39	GO:0009536: plastid	4.45E-02