co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G03040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
2	GO:0032515: negative regulation of phosphoprotein phosphatase activity	0.00E+00
3	GO:0046865: terpenoid transport	0.00E+00
4	GO:0050691: regulation of defense response to virus by host	7.23E-05
5	GO:1990542: mitochondrial transmembrane transport	7.23E-05
6	GO:1990641: response to iron ion starvation	7.23E-05
7	GO:0006101: citrate metabolic process	1.74E-04
8	GO:0015012: heparan sulfate proteoglycan biosynthetic process	1.74E-04
9	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.74E-04
10	GO:0006024: glycosaminoglycan biosynthetic process	1.74E-04
11	GO:0080147: root hair cell development	2.07E-04
12	GO:0080168: abscisic acid transport	2.93E-04
13	GO:0015692: lead ion transport	2.93E-04
14	GO:0080163: regulation of protein serine/threonine phosphatase activity	2.93E-04
15	GO:0055070: copper ion homeostasis	4.23E-04
16	GO:0006097: glyoxylate cycle	7.14E-04
17	GO:0010256: endomembrane system organization	8.73E-04
18	GO:0009850: auxin metabolic process	1.40E-03
19	GO:0031540: regulation of anthocyanin biosynthetic process	1.40E-03
20	GO:0006102: isocitrate metabolic process	1.40E-03
21	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.40E-03
22	GO:0010112: regulation of systemic acquired resistance	1.80E-03
23	GO:0007338: single fertilization	1.80E-03
24	GO:0008202: steroid metabolic process	2.01E-03
25	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.01E-03
26	GO:0009751: response to salicylic acid	2.20E-03
27	GO:0019684: photosynthesis, light reaction	2.46E-03
28	GO:0009089: lysine biosynthetic process via diaminopimelate	2.46E-03
29	GO:0018107: peptidyl-threonine phosphorylation	2.94E-03
30	GO:0002237: response to molecule of bacterial origin	3.19E-03
31	GO:0015031: protein transport	3.47E-03
32	GO:0006289: nucleotide-excision repair	3.98E-03
33	GO:0006334: nucleosome assembly	4.54E-03
34	GO:0009269: response to desiccation	4.54E-03
35	GO:0010150: leaf senescence	4.91E-03
36	GO:0007166: cell surface receptor signaling pathway	5.61E-03
37	GO:0008380: RNA splicing	5.86E-03
38	GO:0071554: cell wall organization or biogenesis	7.38E-03
39	GO:0002229: defense response to oomycetes	7.38E-03
40	GO:0010193: response to ozone	7.38E-03
41	GO:0009567: double fertilization forming a zygote and endosperm	8.43E-03
42	GO:0009723: response to ethylene	8.78E-03
43	GO:0071805: potassium ion transmembrane transport	8.79E-03
44	GO:0010200: response to chitin	9.74E-03
45	GO:0006906: vesicle fusion	1.03E-02
46	GO:0015979: photosynthesis	1.08E-02
47	GO:0042742: defense response to bacterium	1.13E-02
48	GO:0000724: double-strand break repair via homologous recombination	1.32E-02
49	GO:0009867: jasmonic acid mediated signaling pathway	1.36E-02
50	GO:0009853: photorespiration	1.36E-02
51	GO:0006099: tricarboxylic acid cycle	1.40E-02
52	GO:0009753: response to jasmonic acid	1.50E-02
53	GO:0006887: exocytosis	1.54E-02
54	GO:0051707: response to other organism	1.63E-02
55	GO:0009636: response to toxic substance	1.77E-02
56	GO:0006855: drug transmembrane transport	1.81E-02
57	GO:0031347: regulation of defense response	1.86E-02
58	GO:0046686: response to cadmium ion	1.99E-02
59	GO:0006486: protein glycosylation	2.01E-02
60	GO:0006813: potassium ion transport	2.01E-02
61	GO:0018105: peptidyl-serine phosphorylation	2.64E-02
62	GO:0006396: RNA processing	2.64E-02
63	GO:0000398: mRNA splicing, via spliceosome	2.86E-02
64	GO:0009790: embryo development	3.38E-02
65	GO:0009451: RNA modification	3.87E-02
66	GO:0009739: response to gibberellin	4.13E-02
67	GO:0006470: protein dephosphorylation	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0004865: protein serine/threonine phosphatase inhibitor activity	0.00E+00
4	GO:0005212: structural constituent of eye lens	0.00E+00
5	GO:0010285: L,L-diaminopimelate aminotransferase activity	7.23E-05
6	GO:0015036: disulfide oxidoreductase activity	1.74E-04
7	GO:0003994: aconitate hydratase activity	1.74E-04
8	GO:0032934: sterol binding	1.74E-04
9	GO:0050736: O-malonyltransferase activity	1.74E-04
10	GO:0004324: ferredoxin-NADP+ reductase activity	2.93E-04
11	GO:0035529: NADH pyrophosphatase activity	4.23E-04
12	GO:0010178: IAA-amino acid conjugate hydrolase activity	4.23E-04
13	GO:0017077: oxidative phosphorylation uncoupler activity	4.23E-04
14	GO:0047631: ADP-ribose diphosphatase activity	7.14E-04
15	GO:0000210: NAD+ diphosphatase activity	8.73E-04
16	GO:0004656: procollagen-proline 4-dioxygenase activity	1.04E-03
17	GO:0008142: oxysterol binding	1.59E-03
18	GO:0004864: protein phosphatase inhibitor activity	2.23E-03
19	GO:0003712: transcription cofactor activity	3.44E-03
20	GO:0031418: L-ascorbic acid binding	3.98E-03
21	GO:0015079: potassium ion transmembrane transporter activity	4.26E-03
22	GO:0016740: transferase activity	5.96E-03
23	GO:0003682: chromatin binding	8.03E-03
24	GO:0043565: sequence-specific DNA binding	8.56E-03
25	GO:0008483: transaminase activity	8.79E-03
26	GO:0008237: metallopeptidase activity	8.79E-03
27	GO:0016413: O-acetyltransferase activity	9.16E-03
28	GO:0008375: acetylglucosaminyltransferase activity	1.03E-02
29	GO:0030247: polysaccharide binding	1.07E-02
30	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.36E-02
31	GO:0000149: SNARE binding	1.45E-02
32	GO:0051539: 4 iron, 4 sulfur cluster binding	1.49E-02
33	GO:0005484: SNAP receptor activity	1.63E-02
34	GO:0051287: NAD binding	1.86E-02
35	GO:0046872: metal ion binding	1.96E-02
36	GO:0016874: ligase activity	2.47E-02
37	GO:0030170: pyridoxal phosphate binding	3.26E-02
38	GO:0008565: protein transporter activity	3.44E-02
39	GO:0005507: copper ion binding	3.52E-02
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.63E-02
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.52E-02
42	GO:0042802: identical protein binding	4.52E-02
43	GO:0005509: calcium ion binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0000164: protein phosphatase type 1 complex	8.65E-06
2	GO:0031314: extrinsic component of mitochondrial inner membrane	1.74E-04
3	GO:0000813: ESCRT I complex	7.14E-04
4	GO:0005743: mitochondrial inner membrane	2.05E-03
5	GO:0016021: integral component of membrane	2.56E-03
6	GO:0005795: Golgi stack	3.44E-03
7	GO:0005783: endoplasmic reticulum	4.56E-03
8	GO:0005789: endoplasmic reticulum membrane	4.58E-03
9	GO:0005794: Golgi apparatus	1.05E-02
10	GO:0031201: SNARE complex	1.54E-02
11	GO:0005681: spliceosomal complex	2.26E-02
12	GO:0016607: nuclear speck	2.31E-02
13	GO:0009543: chloroplast thylakoid lumen	3.03E-02
14	GO:0009705: plant-type vacuole membrane	3.81E-02
15	GO:0005802: trans-Golgi network	3.96E-02
16	GO:0005768: endosome	4.49E-02