GO Enrichment Analysis of Co-expressed Genes with
AT1G03000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 8.96E-05 |
| 2 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 2.12E-04 |
| 3 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.12E-04 |
| 4 | GO:0048255: mRNA stabilization | 2.12E-04 |
| 5 | GO:0010569: regulation of double-strand break repair via homologous recombination | 2.12E-04 |
| 6 | GO:0080175: phragmoplast microtubule organization | 2.12E-04 |
| 7 | GO:0006013: mannose metabolic process | 3.54E-04 |
| 8 | GO:0009650: UV protection | 5.10E-04 |
| 9 | GO:1902290: positive regulation of defense response to oomycetes | 5.10E-04 |
| 10 | GO:1902476: chloride transmembrane transport | 5.10E-04 |
| 11 | GO:0002229: defense response to oomycetes | 6.76E-04 |
| 12 | GO:0044205: 'de novo' UMP biosynthetic process | 6.78E-04 |
| 13 | GO:0051225: spindle assembly | 8.59E-04 |
| 14 | GO:0009616: virus induced gene silencing | 8.59E-04 |
| 15 | GO:0071493: cellular response to UV-B | 8.59E-04 |
| 16 | GO:0009451: RNA modification | 9.02E-04 |
| 17 | GO:0009959: negative gravitropism | 1.05E-03 |
| 18 | GO:0035194: posttranscriptional gene silencing by RNA | 1.05E-03 |
| 19 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.05E-03 |
| 20 | GO:0009088: threonine biosynthetic process | 1.25E-03 |
| 21 | GO:0006821: chloride transport | 1.46E-03 |
| 22 | GO:0010044: response to aluminum ion | 1.46E-03 |
| 23 | GO:0006401: RNA catabolic process | 1.46E-03 |
| 24 | GO:0010196: nonphotochemical quenching | 1.46E-03 |
| 25 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.46E-03 |
| 26 | GO:0034968: histone lysine methylation | 1.69E-03 |
| 27 | GO:0009827: plant-type cell wall modification | 1.93E-03 |
| 28 | GO:0016571: histone methylation | 2.43E-03 |
| 29 | GO:1900426: positive regulation of defense response to bacterium | 2.43E-03 |
| 30 | GO:0016485: protein processing | 2.98E-03 |
| 31 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.26E-03 |
| 32 | GO:0009116: nucleoside metabolic process | 4.83E-03 |
| 33 | GO:0007010: cytoskeleton organization | 4.83E-03 |
| 34 | GO:0006306: DNA methylation | 5.52E-03 |
| 35 | GO:0009693: ethylene biosynthetic process | 6.23E-03 |
| 36 | GO:0010051: xylem and phloem pattern formation | 7.37E-03 |
| 37 | GO:0006342: chromatin silencing | 7.77E-03 |
| 38 | GO:0008360: regulation of cell shape | 7.77E-03 |
| 39 | GO:0008654: phospholipid biosynthetic process | 8.58E-03 |
| 40 | GO:0031047: gene silencing by RNA | 9.42E-03 |
| 41 | GO:0009639: response to red or far red light | 1.03E-02 |
| 42 | GO:0009793: embryo development ending in seed dormancy | 1.33E-02 |
| 43 | GO:0008219: cell death | 1.41E-02 |
| 44 | GO:0009832: plant-type cell wall biogenesis | 1.46E-02 |
| 45 | GO:0009853: photorespiration | 1.66E-02 |
| 46 | GO:0032259: methylation | 1.78E-02 |
| 47 | GO:0016042: lipid catabolic process | 1.80E-02 |
| 48 | GO:0006897: endocytosis | 1.88E-02 |
| 49 | GO:0006260: DNA replication | 2.28E-02 |
| 50 | GO:0031347: regulation of defense response | 2.28E-02 |
| 51 | GO:0006364: rRNA processing | 2.46E-02 |
| 52 | GO:0043086: negative regulation of catalytic activity | 2.77E-02 |
| 53 | GO:0006468: protein phosphorylation | 2.85E-02 |
| 54 | GO:0018105: peptidyl-serine phosphorylation | 3.23E-02 |
| 55 | GO:0035556: intracellular signal transduction | 3.48E-02 |
| 56 | GO:0016036: cellular response to phosphate starvation | 4.44E-02 |
| 57 | GO:0007623: circadian rhythm | 4.67E-02 |
| 58 | GO:0010150: leaf senescence | 4.67E-02 |
| 59 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 2 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0015075: ion transmembrane transporter activity | 8.96E-05 |
| 5 | GO:0017091: AU-rich element binding | 8.96E-05 |
| 6 | GO:0004795: threonine synthase activity | 8.96E-05 |
| 7 | GO:0008327: methyl-CpG binding | 1.29E-04 |
| 8 | GO:0015929: hexosaminidase activity | 2.12E-04 |
| 9 | GO:0004563: beta-N-acetylhexosaminidase activity | 2.12E-04 |
| 10 | GO:0003723: RNA binding | 3.17E-04 |
| 11 | GO:0010429: methyl-CpNpN binding | 3.54E-04 |
| 12 | GO:0010428: methyl-CpNpG binding | 3.54E-04 |
| 13 | GO:0005253: anion channel activity | 6.78E-04 |
| 14 | GO:0005247: voltage-gated chloride channel activity | 1.05E-03 |
| 15 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.05E-03 |
| 16 | GO:0008236: serine-type peptidase activity | 1.18E-03 |
| 17 | GO:0004559: alpha-mannosidase activity | 1.25E-03 |
| 18 | GO:0008168: methyltransferase activity | 1.43E-03 |
| 19 | GO:0019899: enzyme binding | 1.46E-03 |
| 20 | GO:0003724: RNA helicase activity | 1.93E-03 |
| 21 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 1.93E-03 |
| 22 | GO:0015020: glucuronosyltransferase activity | 2.70E-03 |
| 23 | GO:0004713: protein tyrosine kinase activity | 2.70E-03 |
| 24 | GO:0009982: pseudouridine synthase activity | 3.56E-03 |
| 25 | GO:0000175: 3'-5'-exoribonuclease activity | 3.56E-03 |
| 26 | GO:0004857: enzyme inhibitor activity | 4.83E-03 |
| 27 | GO:0035251: UDP-glucosyltransferase activity | 5.52E-03 |
| 28 | GO:0004540: ribonuclease activity | 5.52E-03 |
| 29 | GO:0008017: microtubule binding | 6.83E-03 |
| 30 | GO:0018024: histone-lysine N-methyltransferase activity | 6.99E-03 |
| 31 | GO:0008080: N-acetyltransferase activity | 7.77E-03 |
| 32 | GO:0030246: carbohydrate binding | 9.72E-03 |
| 33 | GO:0003676: nucleic acid binding | 9.72E-03 |
| 34 | GO:0008237: metallopeptidase activity | 1.07E-02 |
| 35 | GO:0004721: phosphoprotein phosphatase activity | 1.31E-02 |
| 36 | GO:0004806: triglyceride lipase activity | 1.31E-02 |
| 37 | GO:0004674: protein serine/threonine kinase activity | 1.32E-02 |
| 38 | GO:0004222: metalloendopeptidase activity | 1.51E-02 |
| 39 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.56E-02 |
| 40 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.77E-02 |
| 41 | GO:0042393: histone binding | 1.82E-02 |
| 42 | GO:0004519: endonuclease activity | 2.02E-02 |
| 43 | GO:0043621: protein self-association | 2.10E-02 |
| 44 | GO:0003777: microtubule motor activity | 2.65E-02 |
| 45 | GO:0004672: protein kinase activity | 2.65E-02 |
| 46 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.96E-02 |
| 47 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.96E-02 |
| 48 | GO:0051082: unfolded protein binding | 3.16E-02 |
| 49 | GO:0016758: transferase activity, transferring hexosyl groups | 3.64E-02 |
| 50 | GO:0004252: serine-type endopeptidase activity | 4.00E-02 |
| 51 | GO:0016740: transferase activity | 4.01E-02 |
| 52 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.33E-02 |
| 53 | GO:0046910: pectinesterase inhibitor activity | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070176: DRM complex | 0.00E+00 |
| 2 | GO:0010370: perinucleolar chromocenter | 8.96E-05 |
| 3 | GO:0005819: spindle | 1.47E-04 |
| 4 | GO:0070652: HAUS complex | 3.54E-04 |
| 5 | GO:0000178: exosome (RNase complex) | 8.59E-04 |
| 6 | GO:0034707: chloride channel complex | 1.05E-03 |
| 7 | GO:0005655: nucleolar ribonuclease P complex | 1.25E-03 |
| 8 | GO:0010005: cortical microtubule, transverse to long axis | 1.25E-03 |
| 9 | GO:0005720: nuclear heterochromatin | 2.18E-03 |
| 10 | GO:0015030: Cajal body | 2.43E-03 |
| 11 | GO:0005686: U2 snRNP | 2.70E-03 |
| 12 | GO:0009524: phragmoplast | 4.99E-03 |
| 13 | GO:0045271: respiratory chain complex I | 5.17E-03 |
| 14 | GO:0000775: chromosome, centromeric region | 5.87E-03 |
| 15 | GO:0009507: chloroplast | 8.23E-03 |
| 16 | GO:0000932: P-body | 1.17E-02 |
| 17 | GO:0005874: microtubule | 1.21E-02 |
| 18 | GO:0031977: thylakoid lumen | 1.88E-02 |
| 19 | GO:0043231: intracellular membrane-bounded organelle | 2.05E-02 |
| 20 | GO:0009505: plant-type cell wall | 2.17E-02 |
| 21 | GO:0031966: mitochondrial membrane | 2.34E-02 |
| 22 | GO:0005681: spliceosomal complex | 2.77E-02 |
| 23 | GO:0005747: mitochondrial respiratory chain complex I | 2.84E-02 |
| 24 | GO:0005834: heterotrimeric G-protein complex | 2.90E-02 |
| 25 | GO:0009543: chloroplast thylakoid lumen | 3.71E-02 |
| 26 | GO:0005759: mitochondrial matrix | 4.36E-02 |