co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
3	GO:1902000: homogentisate catabolic process	1.37E-04
4	GO:0046939: nucleotide phosphorylation	1.37E-04
5	GO:0006672: ceramide metabolic process	1.37E-04
6	GO:0010372: positive regulation of gibberellin biosynthetic process	1.37E-04
7	GO:0010359: regulation of anion channel activity	2.34E-04
8	GO:0090630: activation of GTPase activity	2.34E-04
9	GO:0009072: aromatic amino acid family metabolic process	2.34E-04
10	GO:0055074: calcium ion homeostasis	2.34E-04
11	GO:0009851: auxin biosynthetic process	3.49E-04
12	GO:0006878: cellular copper ion homeostasis	4.56E-04
13	GO:0006536: glutamate metabolic process	4.56E-04
14	GO:0046283: anthocyanin-containing compound metabolic process	5.78E-04
15	GO:0006564: L-serine biosynthetic process	5.78E-04
16	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.78E-04
17	GO:0046686: response to cadmium ion	6.00E-04
18	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.07E-04
19	GO:0009228: thiamine biosynthetic process	7.07E-04
20	GO:0006499: N-terminal protein myristoylation	7.61E-04
21	GO:0009407: toxin catabolic process	7.61E-04
22	GO:0009554: megasporogenesis	8.44E-04
23	GO:0006402: mRNA catabolic process	1.13E-03
24	GO:0006102: isocitrate metabolic process	1.13E-03
25	GO:0010204: defense response signaling pathway, resistance gene-independent	1.29E-03
26	GO:0009821: alkaloid biosynthetic process	1.45E-03
27	GO:0009751: response to salicylic acid	1.45E-03
28	GO:0046685: response to arsenic-containing substance	1.45E-03
29	GO:0042742: defense response to bacterium	1.45E-03
30	GO:0009688: abscisic acid biosynthetic process	1.79E-03
31	GO:0043069: negative regulation of programmed cell death	1.79E-03
32	GO:0009626: plant-type hypersensitive response	1.84E-03
33	GO:0052544: defense response by callose deposition in cell wall	1.97E-03
34	GO:0015031: protein transport	2.09E-03
35	GO:0016925: protein sumoylation	2.16E-03
36	GO:0006790: sulfur compound metabolic process	2.16E-03
37	GO:0002213: defense response to insect	2.16E-03
38	GO:0006807: nitrogen compound metabolic process	2.36E-03
39	GO:0034605: cellular response to heat	2.56E-03
40	GO:0009058: biosynthetic process	2.72E-03
41	GO:0046854: phosphatidylinositol phosphorylation	2.76E-03
42	GO:0010167: response to nitrate	2.76E-03
43	GO:0000162: tryptophan biosynthetic process	2.97E-03
44	GO:0015992: proton transport	3.63E-03
45	GO:0030433: ubiquitin-dependent ERAD pathway	3.86E-03
46	GO:0009739: response to gibberellin	3.96E-03
47	GO:0010227: floral organ abscission	4.10E-03
48	GO:0009306: protein secretion	4.34E-03
49	GO:0006511: ubiquitin-dependent protein catabolic process	4.49E-03
50	GO:0051028: mRNA transport	4.58E-03
51	GO:0010118: stomatal movement	4.83E-03
52	GO:0031047: gene silencing by RNA	6.15E-03
53	GO:0009630: gravitropism	6.15E-03
54	GO:1901657: glycosyl compound metabolic process	6.43E-03
55	GO:0030163: protein catabolic process	6.43E-03
56	GO:0006914: autophagy	6.71E-03
57	GO:0009615: response to virus	7.59E-03
58	GO:0009651: response to salt stress	9.12E-03
59	GO:0010119: regulation of stomatal movement	1.01E-02
60	GO:0007568: aging	1.01E-02
61	GO:0009753: response to jasmonic acid	1.07E-02
62	GO:0006099: tricarboxylic acid cycle	1.11E-02
63	GO:0009926: auxin polar transport	1.29E-02
64	GO:0051707: response to other organism	1.29E-02
65	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.33E-02
66	GO:0009636: response to toxic substance	1.40E-02
67	GO:0006855: drug transmembrane transport	1.44E-02
68	GO:0031347: regulation of defense response	1.48E-02
69	GO:0009664: plant-type cell wall organization	1.51E-02
70	GO:0009735: response to cytokinin	1.63E-02
71	GO:0051603: proteolysis involved in cellular protein catabolic process	1.63E-02
72	GO:0006096: glycolytic process	1.79E-02
73	GO:0009611: response to wounding	1.82E-02
74	GO:0009620: response to fungus	1.92E-02
75	GO:0009624: response to nematode	2.04E-02
76	GO:0018105: peptidyl-serine phosphorylation	2.09E-02
77	GO:0006457: protein folding	2.31E-02
78	GO:0050832: defense response to fungus	2.95E-02
79	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.27E-02
80	GO:0007166: cell surface receptor signaling pathway	3.32E-02
81	GO:0009414: response to water deprivation	3.52E-02
82	GO:0030154: cell differentiation	3.92E-02
83	GO:0009723: response to ethylene	4.57E-02
84	GO:0080167: response to karrikin	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	5.64E-05
3	GO:0010013: N-1-naphthylphthalamic acid binding	5.64E-05
4	GO:0033984: indole-3-glycerol-phosphate lyase activity	5.64E-05
5	GO:0019786: Atg8-specific protease activity	5.64E-05
6	GO:0019172: glyoxalase III activity	1.37E-04
7	GO:0008517: folic acid transporter activity	1.37E-04
8	GO:0004566: beta-glucuronidase activity	1.37E-04
9	GO:0052739: phosphatidylserine 1-acylhydrolase activity	1.37E-04
10	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	1.37E-04
11	GO:0019779: Atg8 activating enzyme activity	1.37E-04
12	GO:0004298: threonine-type endopeptidase activity	1.80E-04
13	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	2.34E-04
14	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.41E-04
15	GO:0004351: glutamate decarboxylase activity	3.41E-04
16	GO:0019201: nucleotide kinase activity	3.41E-04
17	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.41E-04
18	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	4.56E-04
19	GO:0004031: aldehyde oxidase activity	4.56E-04
20	GO:0050302: indole-3-acetaldehyde oxidase activity	4.56E-04
21	GO:0019776: Atg8 ligase activity	4.56E-04
22	GO:0004834: tryptophan synthase activity	4.56E-04
23	GO:0031386: protein tag	5.78E-04
24	GO:0008374: O-acyltransferase activity	5.78E-04
25	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	7.07E-04
26	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	7.07E-04
27	GO:0036402: proteasome-activating ATPase activity	7.07E-04
28	GO:0004017: adenylate kinase activity	8.44E-04
29	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.44E-04
30	GO:0004364: glutathione transferase activity	1.06E-03
31	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	1.29E-03
32	GO:0030955: potassium ion binding	1.62E-03
33	GO:0016844: strictosidine synthase activity	1.62E-03
34	GO:0004743: pyruvate kinase activity	1.62E-03
35	GO:0004177: aminopeptidase activity	1.97E-03
36	GO:0008559: xenobiotic-transporting ATPase activity	1.97E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	2.36E-03
38	GO:0017025: TBP-class protein binding	2.76E-03
39	GO:0030170: pyridoxal phosphate binding	2.86E-03
40	GO:0005199: structural constituent of cell wall	5.09E-03
41	GO:0000287: magnesium ion binding	5.37E-03
42	GO:0043531: ADP binding	5.99E-03
43	GO:0004518: nuclease activity	6.15E-03
44	GO:0008233: peptidase activity	6.66E-03
45	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	8.11E-03
46	GO:0009931: calcium-dependent protein serine/threonine kinase activity	8.19E-03
47	GO:0004683: calmodulin-dependent protein kinase activity	8.50E-03
48	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	9.03E-03
49	GO:0005096: GTPase activator activity	9.45E-03
50	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.01E-02
51	GO:0008422: beta-glucosidase activity	1.15E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	1.36E-02
53	GO:0005198: structural molecule activity	1.40E-02
54	GO:0051287: NAD binding	1.48E-02
55	GO:0051082: unfolded protein binding	2.04E-02
56	GO:0030246: carbohydrate binding	2.40E-02
57	GO:0005507: copper ion binding	2.54E-02
58	GO:0005516: calmodulin binding	2.68E-02
59	GO:0008565: protein transporter activity	2.73E-02
60	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.87E-02
61	GO:0005509: calcium ion binding	3.33E-02
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.58E-02
63	GO:0044212: transcription regulatory region DNA binding	3.61E-02
64	GO:0004601: peroxidase activity	4.12E-02
65	GO:0050660: flavin adenine dinucleotide binding	4.57E-02
66	GO:0016491: oxidoreductase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	4.72E-06
2	GO:0005829: cytosol	1.62E-05
3	GO:0016442: RISC complex	5.64E-05
4	GO:0005839: proteasome core complex	1.80E-04
5	GO:0009530: primary cell wall	2.34E-04
6	GO:0005775: vacuolar lumen	3.41E-04
7	GO:0005776: autophagosome	4.56E-04
8	GO:0031597: cytosolic proteasome complex	8.44E-04
9	GO:0005886: plasma membrane	8.89E-04
10	GO:0031595: nuclear proteasome complex	9.85E-04
11	GO:0000421: autophagosome membrane	1.13E-03
12	GO:0019773: proteasome core complex, alpha-subunit complex	1.29E-03
13	GO:0031090: organelle membrane	1.45E-03
14	GO:0010494: cytoplasmic stress granule	1.45E-03
15	GO:0005635: nuclear envelope	1.57E-03
16	GO:0008540: proteasome regulatory particle, base subcomplex	1.62E-03
17	GO:0048471: perinuclear region of cytoplasm	1.97E-03
18	GO:0005765: lysosomal membrane	1.97E-03
19	GO:0005783: endoplasmic reticulum	2.35E-03
20	GO:0031410: cytoplasmic vesicle	3.86E-03
21	GO:0005773: vacuole	5.10E-03
22	GO:0000932: P-body	7.59E-03
23	GO:0005788: endoplasmic reticulum lumen	7.89E-03
24	GO:0009507: chloroplast	8.80E-03
25	GO:0005643: nuclear pore	9.13E-03
26	GO:0005774: vacuolar membrane	9.56E-03
27	GO:0000325: plant-type vacuole	1.01E-02
28	GO:0005834: heterotrimeric G-protein complex	1.88E-02
29	GO:0005737: cytoplasm	4.04E-02
30	GO:0009536: plastid	4.41E-02
31	GO:0005874: microtubule	4.68E-02