co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0019323: pentose catabolic process	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
8	GO:0016123: xanthophyll biosynthetic process	1.50E-05
9	GO:0045038: protein import into chloroplast thylakoid membrane	1.50E-05
10	GO:0016117: carotenoid biosynthetic process	2.42E-05
11	GO:0015995: chlorophyll biosynthetic process	9.88E-05
12	GO:1902458: positive regulation of stomatal opening	1.00E-04
13	GO:0070509: calcium ion import	1.00E-04
14	GO:0043489: RNA stabilization	1.00E-04
15	GO:0044262: cellular carbohydrate metabolic process	1.00E-04
16	GO:0010063: positive regulation of trichoblast fate specification	1.00E-04
17	GO:0006779: porphyrin-containing compound biosynthetic process	1.09E-04
18	GO:0006782: protoporphyrinogen IX biosynthetic process	1.30E-04
19	GO:0010207: photosystem II assembly	2.31E-04
20	GO:0001682: tRNA 5'-leader removal	2.36E-04
21	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.36E-04
22	GO:2000123: positive regulation of stomatal complex development	2.36E-04
23	GO:0060359: response to ammonium ion	2.36E-04
24	GO:0048255: mRNA stabilization	2.36E-04
25	GO:0070588: calcium ion transmembrane transport	2.60E-04
26	GO:0043157: response to cation stress	3.92E-04
27	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	3.92E-04
28	GO:0031145: anaphase-promoting complex-dependent catabolic process	3.92E-04
29	GO:0006696: ergosterol biosynthetic process	3.92E-04
30	GO:0010071: root meristem specification	5.64E-04
31	GO:0007231: osmosensory signaling pathway	5.64E-04
32	GO:0009102: biotin biosynthetic process	5.64E-04
33	GO:0030071: regulation of mitotic metaphase/anaphase transition	5.64E-04
34	GO:0016556: mRNA modification	5.64E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	5.64E-04
36	GO:0046739: transport of virus in multicellular host	5.64E-04
37	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	5.64E-04
38	GO:0010305: leaf vascular tissue pattern formation	6.40E-04
39	GO:0009765: photosynthesis, light harvesting	7.50E-04
40	GO:0033500: carbohydrate homeostasis	7.50E-04
41	GO:2000038: regulation of stomatal complex development	7.50E-04
42	GO:0032876: negative regulation of DNA endoreduplication	9.47E-04
43	GO:0010375: stomatal complex patterning	9.47E-04
44	GO:0016120: carotene biosynthetic process	9.47E-04
45	GO:0010236: plastoquinone biosynthetic process	9.47E-04
46	GO:0009451: RNA modification	1.09E-03
47	GO:0010027: thylakoid membrane organization	1.11E-03
48	GO:0009959: negative gravitropism	1.16E-03
49	GO:0016554: cytidine to uridine editing	1.16E-03
50	GO:0032973: amino acid export	1.16E-03
51	GO:0042793: transcription from plastid promoter	1.16E-03
52	GO:0033365: protein localization to organelle	1.16E-03
53	GO:0080086: stamen filament development	1.38E-03
54	GO:0042372: phylloquinone biosynthetic process	1.38E-03
55	GO:0017148: negative regulation of translation	1.38E-03
56	GO:0048528: post-embryonic root development	1.62E-03
57	GO:0043090: amino acid import	1.62E-03
58	GO:0048437: floral organ development	1.62E-03
59	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.62E-03
60	GO:0045087: innate immune response	1.81E-03
61	GO:0000105: histidine biosynthetic process	1.87E-03
62	GO:0009231: riboflavin biosynthetic process	1.87E-03
63	GO:0048564: photosystem I assembly	1.87E-03
64	GO:0046620: regulation of organ growth	1.87E-03
65	GO:0001522: pseudouridine synthesis	1.87E-03
66	GO:0032875: regulation of DNA endoreduplication	1.87E-03
67	GO:2000070: regulation of response to water deprivation	1.87E-03
68	GO:0015996: chlorophyll catabolic process	2.14E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	2.14E-03
70	GO:0010497: plasmodesmata-mediated intercellular transport	2.14E-03
71	GO:0000902: cell morphogenesis	2.41E-03
72	GO:0048507: meristem development	2.41E-03
73	GO:0080144: amino acid homeostasis	2.41E-03
74	GO:1900865: chloroplast RNA modification	2.70E-03
75	GO:0006816: calcium ion transport	3.31E-03
76	GO:0005983: starch catabolic process	3.63E-03
77	GO:0045037: protein import into chloroplast stroma	3.63E-03
78	GO:0006397: mRNA processing	4.14E-03
79	GO:0010020: chloroplast fission	4.30E-03
80	GO:0010030: positive regulation of seed germination	4.64E-03
81	GO:0000162: tryptophan biosynthetic process	5.00E-03
82	GO:0042127: regulation of cell proliferation	7.35E-03
83	GO:0009409: response to cold	7.48E-03
84	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.78E-03
85	GO:0042631: cellular response to water deprivation	8.21E-03
86	GO:0008033: tRNA processing	8.21E-03
87	GO:0034220: ion transmembrane transport	8.21E-03
88	GO:0010087: phloem or xylem histogenesis	8.21E-03
89	GO:0009958: positive gravitropism	8.65E-03
90	GO:0010182: sugar mediated signaling pathway	8.65E-03
91	GO:0007166: cell surface receptor signaling pathway	8.71E-03
92	GO:0009630: gravitropism	1.05E-02
93	GO:0016032: viral process	1.05E-02
94	GO:0006914: autophagy	1.15E-02
95	GO:0009658: chloroplast organization	1.18E-02
96	GO:0007267: cell-cell signaling	1.20E-02
97	GO:0006414: translational elongation	1.35E-02
98	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.52E-02
99	GO:0048481: plant ovule development	1.57E-02
100	GO:0009793: embryo development ending in seed dormancy	1.68E-02
101	GO:0009910: negative regulation of flower development	1.74E-02
102	GO:0009631: cold acclimation	1.74E-02
103	GO:0045892: negative regulation of transcription, DNA-templated	1.78E-02
104	GO:0006865: amino acid transport	1.80E-02
105	GO:0009926: auxin polar transport	2.22E-02
106	GO:0009640: photomorphogenesis	2.22E-02
107	GO:0008283: cell proliferation	2.22E-02
108	GO:0009733: response to auxin	2.30E-02
109	GO:0006508: proteolysis	2.56E-02
110	GO:0051603: proteolysis involved in cellular protein catabolic process	2.81E-02
111	GO:0048367: shoot system development	3.17E-02
112	GO:0009624: response to nematode	3.53E-02
113	GO:0006396: RNA processing	3.61E-02
114	GO:0009742: brassinosteroid mediated signaling pathway	3.68E-02
115	GO:0009790: embryo development	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0046905: phytoene synthase activity	0.00E+00
9	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
10	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
11	GO:0008266: poly(U) RNA binding	5.46E-06
12	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.00E-04
13	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.00E-04
14	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.00E-04
15	GO:0050308: sugar-phosphatase activity	1.00E-04
16	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	1.00E-04
17	GO:0051996: squalene synthase activity	1.00E-04
18	GO:0019203: carbohydrate phosphatase activity	1.00E-04
19	GO:0003723: RNA binding	1.37E-04
20	GO:0003746: translation elongation factor activity	1.61E-04
21	GO:0005262: calcium channel activity	2.03E-04
22	GO:0004750: ribulose-phosphate 3-epimerase activity	2.36E-04
23	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.36E-04
24	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	3.92E-04
25	GO:0004180: carboxypeptidase activity	3.92E-04
26	GO:0016805: dipeptidase activity	3.92E-04
27	GO:0016851: magnesium chelatase activity	5.64E-04
28	GO:0043023: ribosomal large subunit binding	5.64E-04
29	GO:0004519: endonuclease activity	7.79E-04
30	GO:2001070: starch binding	1.16E-03
31	GO:0004526: ribonuclease P activity	1.16E-03
32	GO:0016208: AMP binding	1.16E-03
33	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.38E-03
34	GO:0008312: 7S RNA binding	1.87E-03
35	GO:0003729: mRNA binding	2.16E-03
36	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.41E-03
37	GO:0004161: dimethylallyltranstransferase activity	3.31E-03
38	GO:0015171: amino acid transmembrane transporter activity	3.44E-03
39	GO:0009982: pseudouridine synthase activity	3.95E-03
40	GO:0015266: protein channel activity	3.95E-03
41	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.30E-03
42	GO:0008026: ATP-dependent helicase activity	4.68E-03
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.67E-03
44	GO:0004176: ATP-dependent peptidase activity	6.14E-03
45	GO:0030570: pectate lyase activity	6.94E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.10E-03
47	GO:0019901: protein kinase binding	9.56E-03
48	GO:0008483: transaminase activity	1.20E-02
49	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.20E-02
50	GO:0008237: metallopeptidase activity	1.20E-02
51	GO:0015250: water channel activity	1.30E-02
52	GO:0004721: phosphoprotein phosphatase activity	1.46E-02
53	GO:0005525: GTP binding	1.53E-02
54	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.57E-02
55	GO:0004222: metalloendopeptidase activity	1.68E-02
56	GO:0051539: 4 iron, 4 sulfur cluster binding	2.03E-02
57	GO:0003924: GTPase activity	2.17E-02
58	GO:0004185: serine-type carboxypeptidase activity	2.22E-02
59	GO:0051537: 2 iron, 2 sulfur cluster binding	2.35E-02
60	GO:0035091: phosphatidylinositol binding	2.35E-02
61	GO:0005198: structural molecule activity	2.41E-02
62	GO:0019843: rRNA binding	4.14E-02
63	GO:0016829: lyase activity	4.38E-02
64	GO:0030170: pyridoxal phosphate binding	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.56E-19
2	GO:0009570: chloroplast stroma	2.80E-13
3	GO:0009941: chloroplast envelope	4.74E-08
4	GO:0009508: plastid chromosome	4.38E-06
5	GO:0009534: chloroplast thylakoid	7.09E-06
6	GO:0031969: chloroplast membrane	4.18E-05
7	GO:0010319: stromule	6.46E-05
8	GO:0009295: nucleoid	6.46E-05
9	GO:0030529: intracellular ribonucleoprotein complex	7.73E-05
10	GO:0080085: signal recognition particle, chloroplast targeting	2.36E-04
11	GO:0009528: plastid inner membrane	3.92E-04
12	GO:0010007: magnesium chelatase complex	3.92E-04
13	GO:0009532: plastid stroma	3.94E-04
14	GO:0030663: COPI-coated vesicle membrane	7.50E-04
15	GO:0009527: plastid outer membrane	7.50E-04
16	GO:0042807: central vacuole	1.62E-03
17	GO:0000326: protein storage vacuole	2.14E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.14E-03
19	GO:0005680: anaphase-promoting complex	2.41E-03
20	GO:0016604: nuclear body	2.70E-03
21	GO:0030125: clathrin vesicle coat	3.00E-03
22	GO:0042651: thylakoid membrane	5.75E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.35E-03
24	GO:0031965: nuclear membrane	9.56E-03
25	GO:0009579: thylakoid	1.02E-02
26	GO:0005778: peroxisomal membrane	1.20E-02
27	GO:0005886: plasma membrane	1.35E-02
28	GO:0005874: microtubule	1.42E-02
29	GO:0009707: chloroplast outer membrane	1.57E-02
30	GO:0043231: intracellular membrane-bounded organelle	2.39E-02
31	GO:0005887: integral component of plasma membrane	2.94E-02
32	GO:0010287: plastoglobule	3.99E-02
33	GO:0005759: mitochondrial matrix	4.87E-02