Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G02500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006216: cytidine catabolic process0.00E+00
2GO:0090400: stress-induced premature senescence0.00E+00
3GO:0048034: heme O biosynthetic process0.00E+00
4GO:0046680: response to DDT0.00E+00
5GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
6GO:1904250: positive regulation of age-related resistance0.00E+00
7GO:0010398: xylogalacturonan metabolic process0.00E+00
8GO:0016102: diterpenoid biosynthetic process0.00E+00
9GO:0072722: response to amitrole0.00E+00
10GO:0010150: leaf senescence1.21E-05
11GO:0055114: oxidation-reduction process2.90E-05
12GO:0046686: response to cadmium ion2.95E-05
13GO:1900056: negative regulation of leaf senescence1.59E-04
14GO:0080186: developmental vegetative growth1.59E-04
15GO:0010421: hydrogen peroxide-mediated programmed cell death2.29E-04
16GO:0000032: cell wall mannoprotein biosynthetic process2.29E-04
17GO:0006680: glucosylceramide catabolic process2.29E-04
18GO:0042964: thioredoxin reduction2.29E-04
19GO:0051607: defense response to virus3.54E-04
20GO:0009805: coumarin biosynthetic process5.10E-04
21GO:0006672: ceramide metabolic process5.10E-04
22GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.10E-04
23GO:0015709: thiosulfate transport5.10E-04
24GO:0071422: succinate transmembrane transport5.10E-04
25GO:0045454: cell redox homeostasis6.07E-04
26GO:0009407: toxin catabolic process6.09E-04
27GO:0010043: response to zinc ion6.46E-04
28GO:0010272: response to silver ion8.29E-04
29GO:0052546: cell wall pectin metabolic process8.29E-04
30GO:0033591: response to L-ascorbic acid8.29E-04
31GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity8.29E-04
32GO:0061158: 3'-UTR-mediated mRNA destabilization8.29E-04
33GO:0006065: UDP-glucuronate biosynthetic process8.29E-04
34GO:0006517: protein deglycosylation8.29E-04
35GO:0010476: gibberellin mediated signaling pathway8.29E-04
36GO:0010325: raffinose family oligosaccharide biosynthetic process8.29E-04
37GO:0000162: tryptophan biosynthetic process8.89E-04
38GO:0042542: response to hydrogen peroxide9.46E-04
39GO:0006874: cellular calcium ion homeostasis1.08E-03
40GO:0070301: cellular response to hydrogen peroxide1.18E-03
41GO:0015729: oxaloacetate transport1.18E-03
42GO:0080024: indolebutyric acid metabolic process1.18E-03
43GO:0016998: cell wall macromolecule catabolic process1.18E-03
44GO:0009298: GDP-mannose biosynthetic process1.18E-03
45GO:0045227: capsule polysaccharide biosynthetic process1.57E-03
46GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.57E-03
47GO:0048830: adventitious root development1.57E-03
48GO:1902584: positive regulation of response to water deprivation1.57E-03
49GO:0033358: UDP-L-arabinose biosynthetic process1.57E-03
50GO:1901002: positive regulation of response to salt stress1.57E-03
51GO:0015867: ATP transport1.57E-03
52GO:0010188: response to microbial phytotoxin1.57E-03
53GO:0045927: positive regulation of growth2.01E-03
54GO:0000304: response to singlet oxygen2.01E-03
55GO:0071423: malate transmembrane transport2.01E-03
56GO:0046283: anthocyanin-containing compound metabolic process2.01E-03
57GO:0006564: L-serine biosynthetic process2.01E-03
58GO:0006623: protein targeting to vacuole2.21E-03
59GO:0006979: response to oxidative stress2.43E-03
60GO:0006555: methionine metabolic process2.48E-03
61GO:0035435: phosphate ion transmembrane transport2.48E-03
62GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.48E-03
63GO:0009972: cytidine deamination2.48E-03
64GO:0009759: indole glucosinolate biosynthetic process2.48E-03
65GO:0006561: proline biosynthetic process2.48E-03
66GO:0015866: ADP transport2.48E-03
67GO:0019509: L-methionine salvage from methylthioadenosine2.97E-03
68GO:0030643: cellular phosphate ion homeostasis2.97E-03
69GO:0009082: branched-chain amino acid biosynthetic process2.97E-03
70GO:0034389: lipid particle organization2.97E-03
71GO:0009099: valine biosynthetic process2.97E-03
72GO:0080113: regulation of seed growth2.97E-03
73GO:0048444: floral organ morphogenesis2.97E-03
74GO:0006886: intracellular protein transport2.99E-03
75GO:0071669: plant-type cell wall organization or biogenesis3.50E-03
76GO:1900057: positive regulation of leaf senescence3.50E-03
77GO:0008272: sulfate transport3.50E-03
78GO:0050829: defense response to Gram-negative bacterium3.50E-03
79GO:1902074: response to salt3.50E-03
80GO:0080027: response to herbivore3.50E-03
81GO:0009819: drought recovery4.06E-03
82GO:0043068: positive regulation of programmed cell death4.06E-03
83GO:0006605: protein targeting4.06E-03
84GO:0006491: N-glycan processing4.06E-03
85GO:0009699: phenylpropanoid biosynthetic process4.65E-03
86GO:0006002: fructose 6-phosphate metabolic process4.65E-03
87GO:0019430: removal of superoxide radicals4.65E-03
88GO:0007186: G-protein coupled receptor signaling pathway4.65E-03
89GO:0010120: camalexin biosynthetic process4.65E-03
90GO:0010497: plasmodesmata-mediated intercellular transport4.65E-03
91GO:0009097: isoleucine biosynthetic process4.65E-03
92GO:0006783: heme biosynthetic process5.27E-03
93GO:0010112: regulation of systemic acquired resistance5.27E-03
94GO:0009056: catabolic process5.27E-03
95GO:0043067: regulation of programmed cell death5.91E-03
96GO:0009098: leucine biosynthetic process5.91E-03
97GO:2000280: regulation of root development5.91E-03
98GO:0006839: mitochondrial transport6.41E-03
99GO:0006032: chitin catabolic process6.58E-03
100GO:0009688: abscisic acid biosynthetic process6.58E-03
101GO:0009641: shade avoidance6.58E-03
102GO:0009682: induced systemic resistance7.28E-03
103GO:0052544: defense response by callose deposition in cell wall7.28E-03
104GO:0006415: translational termination7.28E-03
105GO:0000272: polysaccharide catabolic process7.28E-03
106GO:0009684: indoleacetic acid biosynthetic process7.28E-03
107GO:0006790: sulfur compound metabolic process8.00E-03
108GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.00E-03
109GO:0071365: cellular response to auxin stimulus8.00E-03
110GO:0009636: response to toxic substance8.15E-03
111GO:0010102: lateral root morphogenesis8.75E-03
112GO:0006807: nitrogen compound metabolic process8.75E-03
113GO:2000028: regulation of photoperiodism, flowering8.75E-03
114GO:0009718: anthocyanin-containing compound biosynthetic process8.75E-03
115GO:0007275: multicellular organism development9.00E-03
116GO:0009225: nucleotide-sugar metabolic process1.03E-02
117GO:0019853: L-ascorbic acid biosynthetic process1.03E-02
118GO:0090351: seedling development1.03E-02
119GO:0046854: phosphatidylinositol phosphorylation1.03E-02
120GO:0010053: root epidermal cell differentiation1.03E-02
121GO:0034976: response to endoplasmic reticulum stress1.11E-02
122GO:0045333: cellular respiration1.20E-02
123GO:0005992: trehalose biosynthetic process1.20E-02
124GO:0015031: protein transport1.25E-02
125GO:0009620: response to fungus1.27E-02
126GO:0051302: regulation of cell division1.28E-02
127GO:0019915: lipid storage1.37E-02
128GO:0030245: cellulose catabolic process1.46E-02
129GO:0030433: ubiquitin-dependent ERAD pathway1.46E-02
130GO:0071456: cellular response to hypoxia1.46E-02
131GO:0019748: secondary metabolic process1.46E-02
132GO:0010227: floral organ abscission1.56E-02
133GO:0006012: galactose metabolic process1.56E-02
134GO:0042147: retrograde transport, endosome to Golgi1.75E-02
135GO:0042631: cellular response to water deprivation1.85E-02
136GO:0045489: pectin biosynthetic process1.95E-02
137GO:0006662: glycerol ether metabolic process1.95E-02
138GO:0050832: defense response to fungus1.99E-02
139GO:0009646: response to absence of light2.05E-02
140GO:0048544: recognition of pollen2.05E-02
141GO:0009851: auxin biosynthetic process2.16E-02
142GO:0000302: response to reactive oxygen species2.27E-02
143GO:0006891: intra-Golgi vesicle-mediated transport2.27E-02
144GO:0010193: response to ozone2.27E-02
145GO:0006635: fatty acid beta-oxidation2.27E-02
146GO:0040008: regulation of growth2.31E-02
147GO:0045490: pectin catabolic process2.42E-02
148GO:1901657: glycosyl compound metabolic process2.48E-02
149GO:0009651: response to salt stress2.50E-02
150GO:0009567: double fertilization forming a zygote and endosperm2.60E-02
151GO:0019760: glucosinolate metabolic process2.60E-02
152GO:0006464: cellular protein modification process2.60E-02
153GO:0042742: defense response to bacterium2.70E-02
154GO:0010468: regulation of gene expression2.89E-02
155GO:0009617: response to bacterium2.89E-02
156GO:0009615: response to virus2.94E-02
157GO:0010029: regulation of seed germination3.06E-02
158GO:0009816: defense response to bacterium, incompatible interaction3.06E-02
159GO:0006974: cellular response to DNA damage stimulus3.19E-02
160GO:0009627: systemic acquired resistance3.19E-02
161GO:0006888: ER to Golgi vesicle-mediated transport3.31E-02
162GO:0016311: dephosphorylation3.43E-02
163GO:0016049: cell growth3.43E-02
164GO:0009416: response to light stimulus3.48E-02
165GO:0009817: defense response to fungus, incompatible interaction3.56E-02
166GO:0008219: cell death3.56E-02
167GO:0009611: response to wounding3.57E-02
168GO:0048527: lateral root development3.94E-02
169GO:0007568: aging3.94E-02
170GO:0006970: response to osmotic stress4.02E-02
171GO:0045087: innate immune response4.21E-02
172GO:0006099: tricarboxylic acid cycle4.34E-02
173GO:0034599: cellular response to oxidative stress4.34E-02
174GO:0006897: endocytosis4.76E-02
175GO:0016192: vesicle-mediated transport4.86E-02
176GO:0005975: carbohydrate metabolic process4.92E-02
RankGO TermAdjusted P value
1GO:0070577: lysine-acetylated histone binding0.00E+00
2GO:0080013: (E,E)-geranyllinalool synthase activity0.00E+00
3GO:0047844: deoxycytidine deaminase activity0.00E+00
4GO:0008495: protoheme IX farnesyltransferase activity0.00E+00
5GO:0001729: ceramide kinase activity0.00E+00
6GO:0016504: peptidase activator activity0.00E+00
7GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
8GO:0043295: glutathione binding1.59E-04
9GO:2001227: quercitrin binding2.29E-04
10GO:0004425: indole-3-glycerol-phosphate synthase activity2.29E-04
11GO:0070401: NADP+ binding2.29E-04
12GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity2.29E-04
13GO:0004476: mannose-6-phosphate isomerase activity2.29E-04
14GO:0004348: glucosylceramidase activity2.29E-04
15GO:2001147: camalexin binding2.29E-04
16GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.29E-04
17GO:0004649: poly(ADP-ribose) glycohydrolase activity2.29E-04
18GO:0016229: steroid dehydrogenase activity2.29E-04
19GO:0010179: IAA-Ala conjugate hydrolase activity2.29E-04
20GO:0004601: peroxidase activity2.94E-04
21GO:1990585: hydroxyproline O-arabinosyltransferase activity5.10E-04
22GO:1901677: phosphate transmembrane transporter activity5.10E-04
23GO:0015117: thiosulfate transmembrane transporter activity5.10E-04
24GO:0010331: gibberellin binding5.10E-04
25GO:0010297: heteropolysaccharide binding5.10E-04
26GO:0004617: phosphoglycerate dehydrogenase activity5.10E-04
27GO:0004970: ionotropic glutamate receptor activity8.00E-04
28GO:0005217: intracellular ligand-gated ion channel activity8.00E-04
29GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.29E-04
30GO:0005310: dicarboxylic acid transmembrane transporter activity8.29E-04
31GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.29E-04
32GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.29E-04
33GO:0015141: succinate transmembrane transporter activity8.29E-04
34GO:0003979: UDP-glucose 6-dehydrogenase activity8.29E-04
35GO:0004364: glutathione transferase activity9.46E-04
36GO:0015131: oxaloacetate transmembrane transporter activity1.18E-03
37GO:0004416: hydroxyacylglutathione hydrolase activity1.18E-03
38GO:0016149: translation release factor activity, codon specific1.18E-03
39GO:0016656: monodehydroascorbate reductase (NADH) activity1.18E-03
40GO:0052656: L-isoleucine transaminase activity1.18E-03
41GO:0052654: L-leucine transaminase activity1.18E-03
42GO:0017077: oxidative phosphorylation uncoupler activity1.18E-03
43GO:0052655: L-valine transaminase activity1.18E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.57E-03
45GO:0070628: proteasome binding1.57E-03
46GO:0004084: branched-chain-amino-acid transaminase activity1.57E-03
47GO:0004031: aldehyde oxidase activity1.57E-03
48GO:0050302: indole-3-acetaldehyde oxidase activity1.57E-03
49GO:0004930: G-protein coupled receptor activity1.57E-03
50GO:0004659: prenyltransferase activity1.57E-03
51GO:0050373: UDP-arabinose 4-epimerase activity1.57E-03
52GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.01E-03
53GO:0018685: alkane 1-monooxygenase activity2.01E-03
54GO:0004791: thioredoxin-disulfide reductase activity2.06E-03
55GO:0005506: iron ion binding2.31E-03
56GO:0015035: protein disulfide oxidoreductase activity2.34E-03
57GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.48E-03
58GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.48E-03
59GO:0035252: UDP-xylosyltransferase activity2.48E-03
60GO:0015217: ADP transmembrane transporter activity2.97E-03
61GO:0051920: peroxiredoxin activity2.97E-03
62GO:0004126: cytidine deaminase activity2.97E-03
63GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.97E-03
64GO:0003950: NAD+ ADP-ribosyltransferase activity2.97E-03
65GO:0004602: glutathione peroxidase activity2.97E-03
66GO:0005347: ATP transmembrane transporter activity2.97E-03
67GO:0003978: UDP-glucose 4-epimerase activity2.97E-03
68GO:0003872: 6-phosphofructokinase activity3.50E-03
69GO:0015140: malate transmembrane transporter activity3.50E-03
70GO:0008320: protein transmembrane transporter activity3.50E-03
71GO:0004033: aldo-keto reductase (NADP) activity4.06E-03
72GO:0004311: farnesyltranstransferase activity4.06E-03
73GO:0004714: transmembrane receptor protein tyrosine kinase activity4.06E-03
74GO:0016209: antioxidant activity4.06E-03
75GO:0004630: phospholipase D activity4.65E-03
76GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.65E-03
77GO:0003951: NAD+ kinase activity4.65E-03
78GO:0003747: translation release factor activity5.27E-03
79GO:0003993: acid phosphatase activity5.88E-03
80GO:0045309: protein phosphorylated amino acid binding5.91E-03
81GO:0004568: chitinase activity6.58E-03
82GO:0019904: protein domain specific binding7.28E-03
83GO:0008794: arsenate reductase (glutaredoxin) activity7.28E-03
84GO:0015116: sulfate transmembrane transporter activity8.00E-03
85GO:0005198: structural molecule activity8.15E-03
86GO:0051287: NAD binding8.78E-03
87GO:0050660: flavin adenine dinucleotide binding9.46E-03
88GO:0008061: chitin binding1.03E-02
89GO:0031625: ubiquitin protein ligase binding1.08E-02
90GO:0010333: terpene synthase activity1.37E-02
91GO:0008810: cellulase activity1.56E-02
92GO:0019825: oxygen binding1.60E-02
93GO:0003756: protein disulfide isomerase activity1.65E-02
94GO:0004499: N,N-dimethylaniline monooxygenase activity1.65E-02
95GO:0003727: single-stranded RNA binding1.65E-02
96GO:0047134: protein-disulfide reductase activity1.75E-02
97GO:0020037: heme binding1.81E-02
98GO:0001085: RNA polymerase II transcription factor binding1.95E-02
99GO:0005199: structural constituent of cell wall1.95E-02
100GO:0030276: clathrin binding1.95E-02
101GO:0010181: FMN binding2.05E-02
102GO:0008565: protein transporter activity2.10E-02
103GO:0015297: antiporter activity2.31E-02
104GO:0004518: nuclease activity2.37E-02
105GO:0005509: calcium ion binding2.39E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.48E-02
107GO:0008289: lipid binding2.57E-02
108GO:0016791: phosphatase activity2.60E-02
109GO:0008237: metallopeptidase activity2.71E-02
110GO:0016597: amino acid binding2.83E-02
111GO:0051213: dioxygenase activity2.94E-02
112GO:0102483: scopolin beta-glucosidase activity3.31E-02
113GO:0004806: triglyceride lipase activity3.31E-02
114GO:0016798: hydrolase activity, acting on glycosyl bonds3.31E-02
115GO:0004222: metalloendopeptidase activity3.81E-02
116GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.94E-02
117GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.94E-02
118GO:0030145: manganese ion binding3.94E-02
119GO:0003746: translation elongation factor activity4.21E-02
120GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.21E-02
121GO:0008422: beta-glucosidase activity4.48E-02
122GO:0004712: protein serine/threonine/tyrosine kinase activity4.48E-02
123GO:0050661: NADP binding4.62E-02
124GO:0004497: monooxygenase activity4.62E-02
125GO:0030246: carbohydrate binding4.99E-02
RankGO TermAdjusted P value
1GO:0030121: AP-1 adaptor complex0.00E+00
2GO:0045252: oxoglutarate dehydrogenase complex2.29E-04
3GO:0005794: Golgi apparatus3.06E-04
4GO:0005886: plasma membrane3.42E-04
5GO:0017119: Golgi transport complex4.23E-04
6GO:0005783: endoplasmic reticulum4.51E-04
7GO:0005789: endoplasmic reticulum membrane5.14E-04
8GO:0009530: primary cell wall8.29E-04
9GO:0005945: 6-phosphofructokinase complex2.01E-03
10GO:0032580: Golgi cisterna membrane2.86E-03
11GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.50E-03
12GO:0009986: cell surface3.50E-03
13GO:0005788: endoplasmic reticulum lumen3.60E-03
14GO:0005773: vacuole3.83E-03
15GO:0030131: clathrin adaptor complex4.06E-03
16GO:0005779: integral component of peroxisomal membrane4.65E-03
17GO:0005811: lipid particle4.65E-03
18GO:0030665: clathrin-coated vesicle membrane5.91E-03
19GO:0005829: cytosol6.92E-03
20GO:0009506: plasmodesma7.57E-03
21GO:0031012: extracellular matrix8.75E-03
22GO:0005839: proteasome core complex1.37E-02
23GO:0005905: clathrin-coated pit1.37E-02
24GO:0000139: Golgi membrane1.39E-02
25GO:0005743: mitochondrial inner membrane1.55E-02
26GO:0005737: cytoplasm2.06E-02
27GO:0031965: nuclear membrane2.16E-02
28GO:0019898: extrinsic component of membrane2.16E-02
29GO:0016592: mediator complex2.37E-02
30GO:0071944: cell periphery2.48E-02
31GO:0016021: integral component of membrane2.50E-02
32GO:0005667: transcription factor complex3.19E-02
33GO:0009707: chloroplast outer membrane3.56E-02
34GO:0009505: plant-type cell wall3.75E-02
35GO:0031902: late endosome membrane4.76E-02
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Gene type



Gene DE type