co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0042821: pyridoxal biosynthetic process	0.00E+00
10	GO:0007638: mechanosensory behavior	0.00E+00
11	GO:0042820: vitamin B6 catabolic process	0.00E+00
12	GO:1905177: tracheary element differentiation	0.00E+00
13	GO:0006399: tRNA metabolic process	0.00E+00
14	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
15	GO:0045038: protein import into chloroplast thylakoid membrane	8.19E-07
16	GO:0016556: mRNA modification	2.94E-05
17	GO:2001141: regulation of RNA biosynthetic process	2.94E-05
18	GO:0010207: photosystem II assembly	5.78E-05
19	GO:0009658: chloroplast organization	8.47E-05
20	GO:0006419: alanyl-tRNA aminoacylation	2.82E-04
21	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.82E-04
22	GO:0009443: pyridoxal 5'-phosphate salvage	2.82E-04
23	GO:0070509: calcium ion import	2.82E-04
24	GO:0043266: regulation of potassium ion transport	2.82E-04
25	GO:0010063: positive regulation of trichoblast fate specification	2.82E-04
26	GO:0051775: response to redox state	2.82E-04
27	GO:0010080: regulation of floral meristem growth	2.82E-04
28	GO:0006659: phosphatidylserine biosynthetic process	2.82E-04
29	GO:2000021: regulation of ion homeostasis	2.82E-04
30	GO:0051247: positive regulation of protein metabolic process	2.82E-04
31	GO:1902458: positive regulation of stomatal opening	2.82E-04
32	GO:2000905: negative regulation of starch metabolic process	2.82E-04
33	GO:0010450: inflorescence meristem growth	2.82E-04
34	GO:0000305: response to oxygen radical	2.82E-04
35	GO:0008654: phospholipid biosynthetic process	3.16E-04
36	GO:0071482: cellular response to light stimulus	3.40E-04
37	GO:0032502: developmental process	3.77E-04
38	GO:1900865: chloroplast RNA modification	4.86E-04
39	GO:0010027: thylakoid membrane organization	5.58E-04
40	GO:0060359: response to ammonium ion	6.19E-04
41	GO:0048255: mRNA stabilization	6.19E-04
42	GO:1901959: positive regulation of cutin biosynthetic process	6.19E-04
43	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.19E-04
44	GO:0006352: DNA-templated transcription, initiation	6.54E-04
45	GO:0010020: chloroplast fission	9.50E-04
46	GO:0048281: inflorescence morphogenesis	1.00E-03
47	GO:0048586: regulation of long-day photoperiodism, flowering	1.00E-03
48	GO:0010022: meristem determinacy	1.00E-03
49	GO:0010623: programmed cell death involved in cell development	1.00E-03
50	GO:1904278: positive regulation of wax biosynthetic process	1.00E-03
51	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.00E-03
52	GO:0090153: regulation of sphingolipid biosynthetic process	1.00E-03
53	GO:0043157: response to cation stress	1.00E-03
54	GO:0045165: cell fate commitment	1.00E-03
55	GO:0070588: calcium ion transmembrane transport	1.06E-03
56	GO:0040008: regulation of growth	1.18E-03
57	GO:0009944: polarity specification of adaxial/abaxial axis	1.30E-03
58	GO:0006107: oxaloacetate metabolic process	1.44E-03
59	GO:0019048: modulation by virus of host morphology or physiology	1.44E-03
60	GO:0009226: nucleotide-sugar biosynthetic process	1.44E-03
61	GO:0031048: chromatin silencing by small RNA	1.44E-03
62	GO:0010148: transpiration	1.44E-03
63	GO:0046739: transport of virus in multicellular host	1.44E-03
64	GO:0043572: plastid fission	1.44E-03
65	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.44E-03
66	GO:0010071: root meristem specification	1.44E-03
67	GO:0007231: osmosensory signaling pathway	1.44E-03
68	GO:0030245: cellulose catabolic process	1.72E-03
69	GO:0006730: one-carbon metabolic process	1.72E-03
70	GO:0006661: phosphatidylinositol biosynthetic process	1.92E-03
71	GO:2000306: positive regulation of photomorphogenesis	1.92E-03
72	GO:0006109: regulation of carbohydrate metabolic process	1.92E-03
73	GO:0006085: acetyl-CoA biosynthetic process	1.92E-03
74	GO:0022622: root system development	1.92E-03
75	GO:0033500: carbohydrate homeostasis	1.92E-03
76	GO:0045723: positive regulation of fatty acid biosynthetic process	1.92E-03
77	GO:0051567: histone H3-K9 methylation	1.92E-03
78	GO:0010508: positive regulation of autophagy	1.92E-03
79	GO:0006021: inositol biosynthetic process	1.92E-03
80	GO:0008295: spermidine biosynthetic process	1.92E-03
81	GO:0006749: glutathione metabolic process	1.92E-03
82	GO:0006734: NADH metabolic process	1.92E-03
83	GO:0009664: plant-type cell wall organization	1.92E-03
84	GO:0010109: regulation of photosynthesis	1.92E-03
85	GO:0010158: abaxial cell fate specification	2.46E-03
86	GO:1902183: regulation of shoot apical meristem development	2.46E-03
87	GO:0016123: xanthophyll biosynthetic process	2.46E-03
88	GO:0010182: sugar mediated signaling pathway	2.58E-03
89	GO:0006555: methionine metabolic process	3.03E-03
90	GO:0016554: cytidine to uridine editing	3.03E-03
91	GO:0006655: phosphatidylglycerol biosynthetic process	3.03E-03
92	GO:0032973: amino acid export	3.03E-03
93	GO:0016458: gene silencing	3.03E-03
94	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.03E-03
95	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.03E-03
96	GO:0009959: negative gravitropism	3.03E-03
97	GO:0017148: negative regulation of translation	3.65E-03
98	GO:2000033: regulation of seed dormancy process	3.65E-03
99	GO:0010189: vitamin E biosynthetic process	3.65E-03
100	GO:0080086: stamen filament development	3.65E-03
101	GO:0009828: plant-type cell wall loosening	3.85E-03
102	GO:0015979: photosynthesis	4.19E-03
103	GO:0043090: amino acid import	4.30E-03
104	GO:0048437: floral organ development	4.30E-03
105	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.30E-03
106	GO:0070370: cellular heat acclimation	4.30E-03
107	GO:0006400: tRNA modification	4.30E-03
108	GO:0010103: stomatal complex morphogenesis	4.30E-03
109	GO:0032880: regulation of protein localization	4.30E-03
110	GO:0048528: post-embryonic root development	4.30E-03
111	GO:0048564: photosystem I assembly	4.99E-03
112	GO:0042255: ribosome assembly	4.99E-03
113	GO:0009690: cytokinin metabolic process	4.99E-03
114	GO:0046620: regulation of organ growth	4.99E-03
115	GO:0006353: DNA-templated transcription, termination	4.99E-03
116	GO:0006605: protein targeting	4.99E-03
117	GO:2000070: regulation of response to water deprivation	4.99E-03
118	GO:0015995: chlorophyll biosynthetic process	5.40E-03
119	GO:0015996: chlorophyll catabolic process	5.72E-03
120	GO:0001558: regulation of cell growth	5.72E-03
121	GO:0007186: G-protein coupled receptor signaling pathway	5.72E-03
122	GO:0010497: plasmodesmata-mediated intercellular transport	5.72E-03
123	GO:0009657: plastid organization	5.72E-03
124	GO:0007275: multicellular organism development	5.72E-03
125	GO:0010093: specification of floral organ identity	5.72E-03
126	GO:0080144: amino acid homeostasis	6.48E-03
127	GO:2000024: regulation of leaf development	6.48E-03
128	GO:0000373: Group II intron splicing	6.48E-03
129	GO:0000902: cell morphogenesis	6.48E-03
130	GO:0006779: porphyrin-containing compound biosynthetic process	7.28E-03
131	GO:0035999: tetrahydrofolate interconversion	7.28E-03
132	GO:0009086: methionine biosynthetic process	7.28E-03
133	GO:0031425: chloroplast RNA processing	7.28E-03
134	GO:0010162: seed dormancy process	8.11E-03
135	GO:0006782: protoporphyrinogen IX biosynthetic process	8.11E-03
136	GO:0030422: production of siRNA involved in RNA interference	8.11E-03
137	GO:0045036: protein targeting to chloroplast	8.11E-03
138	GO:0009641: shade avoidance	8.11E-03
139	GO:0006949: syncytium formation	8.11E-03
140	GO:0031627: telomeric loop formation	8.11E-03
141	GO:0006839: mitochondrial transport	8.65E-03
142	GO:0006816: calcium ion transport	8.97E-03
143	GO:0019684: photosynthesis, light reaction	8.97E-03
144	GO:0009773: photosynthetic electron transport in photosystem I	8.97E-03
145	GO:0009089: lysine biosynthetic process via diaminopimelate	8.97E-03
146	GO:0009073: aromatic amino acid family biosynthetic process	8.97E-03
147	GO:0043085: positive regulation of catalytic activity	8.97E-03
148	GO:0006415: translational termination	8.97E-03
149	GO:0016024: CDP-diacylglycerol biosynthetic process	9.88E-03
150	GO:0045037: protein import into chloroplast stroma	9.88E-03
151	GO:0010582: floral meristem determinacy	9.88E-03
152	GO:2000012: regulation of auxin polar transport	1.08E-02
153	GO:0010628: positive regulation of gene expression	1.08E-02
154	GO:0006108: malate metabolic process	1.08E-02
155	GO:0009933: meristem structural organization	1.18E-02
156	GO:0009887: animal organ morphogenesis	1.18E-02
157	GO:0010030: positive regulation of seed germination	1.28E-02
158	GO:0009969: xyloglucan biosynthetic process	1.28E-02
159	GO:0006486: protein glycosylation	1.32E-02
160	GO:0008299: isoprenoid biosynthetic process	1.59E-02
161	GO:0007017: microtubule-based process	1.59E-02
162	GO:0051302: regulation of cell division	1.59E-02
163	GO:0006306: DNA methylation	1.70E-02
164	GO:0010431: seed maturation	1.70E-02
165	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.93E-02
166	GO:0001944: vasculature development	1.93E-02
167	GO:0042127: regulation of cell proliferation	2.05E-02
168	GO:0009561: megagametogenesis	2.05E-02
169	GO:0010089: xylem development	2.05E-02
170	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.17E-02
171	GO:0008284: positive regulation of cell proliferation	2.17E-02
172	GO:0042631: cellular response to water deprivation	2.29E-02
173	GO:0008033: tRNA processing	2.29E-02
174	GO:0009958: positive gravitropism	2.42E-02
175	GO:0010154: fruit development	2.42E-02
176	GO:0010305: leaf vascular tissue pattern formation	2.42E-02
177	GO:0006662: glycerol ether metabolic process	2.42E-02
178	GO:0048868: pollen tube development	2.42E-02
179	GO:0006342: chromatin silencing	2.42E-02
180	GO:0009646: response to absence of light	2.54E-02
181	GO:0006810: transport	2.66E-02
182	GO:0009791: post-embryonic development	2.67E-02
183	GO:0005975: carbohydrate metabolic process	2.81E-02
184	GO:0016032: viral process	2.94E-02
185	GO:0009630: gravitropism	2.94E-02
186	GO:0010090: trichome morphogenesis	3.08E-02
187	GO:0009451: RNA modification	3.34E-02
188	GO:0051607: defense response to virus	3.50E-02
189	GO:0009734: auxin-activated signaling pathway	3.79E-02
190	GO:0010029: regulation of seed germination	3.80E-02
191	GO:0009816: defense response to bacterium, incompatible interaction	3.80E-02
192	GO:0009627: systemic acquired resistance	3.95E-02
193	GO:0071555: cell wall organization	4.17E-02
194	GO:0048481: plant ovule development	4.41E-02
195	GO:0018298: protein-chromophore linkage	4.41E-02
196	GO:0009832: plant-type cell wall biogenesis	4.56E-02
197	GO:0009407: toxin catabolic process	4.72E-02
198	GO:0009826: unidimensional cell growth	4.84E-02
199	GO:0048527: lateral root development	4.88E-02
200	GO:0007568: aging	4.88E-02
201	GO:0009733: response to auxin	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0070402: NADPH binding	1.31E-05
7	GO:0016987: sigma factor activity	5.29E-05
8	GO:0001053: plastid sigma factor activity	5.29E-05
9	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.82E-04
10	GO:0004813: alanine-tRNA ligase activity	2.82E-04
11	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.82E-04
12	GO:0008158: hedgehog receptor activity	2.82E-04
13	GO:0005080: protein kinase C binding	2.82E-04
14	GO:0008746: NAD(P)+ transhydrogenase activity	2.82E-04
15	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.82E-04
16	GO:0004312: fatty acid synthase activity	6.19E-04
17	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.19E-04
18	GO:0004512: inositol-3-phosphate synthase activity	6.19E-04
19	GO:0004362: glutathione-disulfide reductase activity	6.19E-04
20	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.19E-04
21	GO:0004766: spermidine synthase activity	6.19E-04
22	GO:0031072: heat shock protein binding	8.46E-04
23	GO:0005262: calcium channel activity	8.46E-04
24	GO:0003913: DNA photolyase activity	1.00E-03
25	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.00E-03
26	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.00E-03
27	GO:0003878: ATP citrate synthase activity	1.44E-03
28	GO:0016149: translation release factor activity, codon specific	1.44E-03
29	GO:0035197: siRNA binding	1.44E-03
30	GO:0016851: magnesium chelatase activity	1.44E-03
31	GO:0043023: ribosomal large subunit binding	1.44E-03
32	GO:0001872: (1->3)-beta-D-glucan binding	1.44E-03
33	GO:0004519: endonuclease activity	1.71E-03
34	GO:0008810: cellulase activity	1.88E-03
35	GO:0019199: transmembrane receptor protein kinase activity	1.92E-03
36	GO:0042277: peptide binding	1.92E-03
37	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.92E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.92E-03
39	GO:0003727: single-stranded RNA binding	2.04E-03
40	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.10E-03
41	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.46E-03
42	GO:0004462: lactoylglutathione lyase activity	3.03E-03
43	GO:0016615: malate dehydrogenase activity	3.03E-03
44	GO:0004605: phosphatidate cytidylyltransferase activity	3.03E-03
45	GO:0051082: unfolded protein binding	3.29E-03
46	GO:0004017: adenylate kinase activity	3.65E-03
47	GO:0030060: L-malate dehydrogenase activity	3.65E-03
48	GO:0009881: photoreceptor activity	4.30E-03
49	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	4.30E-03
50	GO:0008312: 7S RNA binding	4.99E-03
51	GO:0004033: aldo-keto reductase (NADP) activity	4.99E-03
52	GO:0008417: fucosyltransferase activity	6.48E-03
53	GO:0003747: translation release factor activity	6.48E-03
54	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.59E-03
55	GO:0004222: metalloendopeptidase activity	6.60E-03
56	GO:0004743: pyruvate kinase activity	7.28E-03
57	GO:0030955: potassium ion binding	7.28E-03
58	GO:0008047: enzyme activator activity	8.11E-03
59	GO:0003691: double-stranded telomeric DNA binding	8.97E-03
60	GO:0003723: RNA binding	9.41E-03
61	GO:0004521: endoribonuclease activity	9.88E-03
62	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.88E-03
63	GO:0000049: tRNA binding	9.88E-03
64	GO:0008378: galactosyltransferase activity	9.88E-03
65	GO:0008083: growth factor activity	1.18E-02
66	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.18E-02
67	GO:0008266: poly(U) RNA binding	1.18E-02
68	GO:0003690: double-stranded DNA binding	1.37E-02
69	GO:0005528: FK506 binding	1.48E-02
70	GO:0004857: enzyme inhibitor activity	1.48E-02
71	GO:0005345: purine nucleobase transmembrane transporter activity	1.59E-02
72	GO:0005524: ATP binding	1.60E-02
73	GO:0004176: ATP-dependent peptidase activity	1.70E-02
74	GO:0030570: pectate lyase activity	1.93E-02
75	GO:0047134: protein-disulfide reductase activity	2.17E-02
76	GO:0003924: GTPase activity	2.48E-02
77	GO:0004791: thioredoxin-disulfide reductase activity	2.54E-02
78	GO:0016853: isomerase activity	2.54E-02
79	GO:0016829: lyase activity	2.56E-02
80	GO:0048038: quinone binding	2.81E-02
81	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.05E-02
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-02
83	GO:0008483: transaminase activity	3.36E-02
84	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.36E-02
85	GO:0008237: metallopeptidase activity	3.36E-02
86	GO:0005200: structural constituent of cytoskeleton	3.36E-02
87	GO:0016597: amino acid binding	3.50E-02
88	GO:0004721: phosphoprotein phosphatase activity	4.10E-02
89	GO:0030247: polysaccharide binding	4.10E-02
90	GO:0015238: drug transmembrane transporter activity	4.56E-02
91	GO:0030145: manganese ion binding	4.88E-02
92	GO:0000287: magnesium ion binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.27E-21
2	GO:0009570: chloroplast stroma	1.32E-14
3	GO:0009535: chloroplast thylakoid membrane	3.24E-06
4	GO:0080085: signal recognition particle, chloroplast targeting	3.65E-06
5	GO:0009579: thylakoid	1.45E-05
6	GO:0009941: chloroplast envelope	2.87E-05
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.40E-04
8	GO:0009534: chloroplast thylakoid	4.17E-04
9	GO:0010319: stromule	4.81E-04
10	GO:0009543: chloroplast thylakoid lumen	7.83E-04
11	GO:0009528: plastid inner membrane	1.00E-03
12	GO:0010007: magnesium chelatase complex	1.00E-03
13	GO:0009654: photosystem II oxygen evolving complex	1.44E-03
14	GO:0009346: citrate lyase complex	1.44E-03
15	GO:0005719: nuclear euchromatin	1.44E-03
16	GO:0015630: microtubule cytoskeleton	1.44E-03
17	GO:0009532: plastid stroma	1.58E-03
18	GO:0030663: COPI-coated vesicle membrane	1.92E-03
19	GO:0009527: plastid outer membrane	1.92E-03
20	GO:0019898: extrinsic component of membrane	2.97E-03
21	GO:0031969: chloroplast membrane	3.42E-03
22	GO:0030529: intracellular ribonucleoprotein complex	4.59E-03
23	GO:0000783: nuclear telomere cap complex	5.72E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.48E-03
25	GO:0015030: Cajal body	7.28E-03
26	GO:0030125: clathrin vesicle coat	8.11E-03
27	GO:0000418: DNA-directed RNA polymerase IV complex	8.11E-03
28	GO:0031225: anchored component of membrane	8.82E-03
29	GO:0031977: thylakoid lumen	9.03E-03
30	GO:0046658: anchored component of plasma membrane	9.44E-03
31	GO:0000311: plastid large ribosomal subunit	9.88E-03
32	GO:0009508: plastid chromosome	1.08E-02
33	GO:0005578: proteinaceous extracellular matrix	1.08E-02
34	GO:0042651: thylakoid membrane	1.59E-02
35	GO:0005886: plasma membrane	1.83E-02
36	GO:0009505: plant-type cell wall	2.04E-02
37	GO:0005623: cell	2.43E-02
38	GO:0032580: Golgi cisterna membrane	3.22E-02
39	GO:0009295: nucleoid	3.36E-02
40	GO:0009707: chloroplast outer membrane	4.41E-02
41	GO:0015934: large ribosomal subunit	4.88E-02