co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0046620: regulation of organ growth	1.61E-05
6	GO:0009733: response to auxin	4.20E-05
7	GO:0043686: co-translational protein modification	3.99E-04
8	GO:0034757: negative regulation of iron ion transport	3.99E-04
9	GO:0000025: maltose catabolic process	3.99E-04
10	GO:0006438: valyl-tRNA aminoacylation	3.99E-04
11	GO:0040008: regulation of growth	5.42E-04
12	GO:0010271: regulation of chlorophyll catabolic process	8.66E-04
13	GO:0030187: melatonin biosynthetic process	8.66E-04
14	GO:0009786: regulation of asymmetric cell division	8.66E-04
15	GO:0031648: protein destabilization	8.66E-04
16	GO:0006741: NADP biosynthetic process	8.66E-04
17	GO:0071398: cellular response to fatty acid	1.40E-03
18	GO:0030029: actin filament-based process	1.40E-03
19	GO:0019674: NAD metabolic process	1.40E-03
20	GO:0090506: axillary shoot meristem initiation	1.40E-03
21	GO:0009405: pathogenesis	1.40E-03
22	GO:0080117: secondary growth	1.40E-03
23	GO:0009734: auxin-activated signaling pathway	1.90E-03
24	GO:0046739: transport of virus in multicellular host	2.03E-03
25	GO:0019363: pyridine nucleotide biosynthetic process	2.03E-03
26	GO:0051513: regulation of monopolar cell growth	2.03E-03
27	GO:0010239: chloroplast mRNA processing	2.03E-03
28	GO:0009755: hormone-mediated signaling pathway	2.73E-03
29	GO:0042274: ribosomal small subunit biogenesis	2.73E-03
30	GO:0009926: auxin polar transport	2.77E-03
31	GO:0071215: cellular response to abscisic acid stimulus	3.13E-03
32	GO:0031365: N-terminal protein amino acid modification	3.49E-03
33	GO:0009107: lipoate biosynthetic process	3.49E-03
34	GO:0010438: cellular response to sulfur starvation	3.49E-03
35	GO:0009696: salicylic acid metabolic process	3.49E-03
36	GO:0045487: gibberellin catabolic process	3.49E-03
37	GO:0016131: brassinosteroid metabolic process	3.49E-03
38	GO:0010087: phloem or xylem histogenesis	3.99E-03
39	GO:0009958: positive gravitropism	4.30E-03
40	GO:0016554: cytidine to uridine editing	4.32E-03
41	GO:0006655: phosphatidylglycerol biosynthetic process	4.32E-03
42	GO:1902456: regulation of stomatal opening	4.32E-03
43	GO:0048831: regulation of shoot system development	4.32E-03
44	GO:0003006: developmental process involved in reproduction	4.32E-03
45	GO:0006694: steroid biosynthetic process	5.20E-03
46	GO:0048509: regulation of meristem development	5.20E-03
47	GO:0031930: mitochondria-nucleus signaling pathway	5.20E-03
48	GO:0009658: chloroplast organization	5.43E-03
49	GO:0080186: developmental vegetative growth	6.15E-03
50	GO:0010098: suspensor development	6.15E-03
51	GO:0009704: de-etiolation	7.15E-03
52	GO:2000070: regulation of response to water deprivation	7.15E-03
53	GO:0000105: histidine biosynthetic process	7.15E-03
54	GO:0009231: riboflavin biosynthetic process	7.15E-03
55	GO:0009819: drought recovery	7.15E-03
56	GO:0042255: ribosome assembly	7.15E-03
57	GO:0006353: DNA-templated transcription, termination	7.15E-03
58	GO:0006402: mRNA catabolic process	7.15E-03
59	GO:0010439: regulation of glucosinolate biosynthetic process	7.15E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.94E-03
61	GO:0032544: plastid translation	8.21E-03
62	GO:0071482: cellular response to light stimulus	8.21E-03
63	GO:0007186: G-protein coupled receptor signaling pathway	8.21E-03
64	GO:0048573: photoperiodism, flowering	9.07E-03
65	GO:0000373: Group II intron splicing	9.31E-03
66	GO:0048507: meristem development	9.31E-03
67	GO:0051865: protein autoubiquitination	9.31E-03
68	GO:0045892: negative regulation of transcription, DNA-templated	1.01E-02
69	GO:0016573: histone acetylation	1.05E-02
70	GO:0006779: porphyrin-containing compound biosynthetic process	1.05E-02
71	GO:0009098: leucine biosynthetic process	1.05E-02
72	GO:1900865: chloroplast RNA modification	1.05E-02
73	GO:0016571: histone methylation	1.05E-02
74	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.17E-02
75	GO:0048829: root cap development	1.17E-02
76	GO:0009641: shade avoidance	1.17E-02
77	GO:0010629: negative regulation of gene expression	1.17E-02
78	GO:0006782: protoporphyrinogen IX biosynthetic process	1.17E-02
79	GO:0009867: jasmonic acid mediated signaling pathway	1.28E-02
80	GO:0009750: response to fructose	1.29E-02
81	GO:0009682: induced systemic resistance	1.29E-02
82	GO:0043085: positive regulation of catalytic activity	1.29E-02
83	GO:0034599: cellular response to oxidative stress	1.34E-02
84	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.43E-02
85	GO:0005983: starch catabolic process	1.43E-02
86	GO:0016024: CDP-diacylglycerol biosynthetic process	1.43E-02
87	GO:0045037: protein import into chloroplast stroma	1.43E-02
88	GO:0010582: floral meristem determinacy	1.43E-02
89	GO:0006631: fatty acid metabolic process	1.52E-02
90	GO:0006006: glucose metabolic process	1.56E-02
91	GO:2000028: regulation of photoperiodism, flowering	1.56E-02
92	GO:0010588: cotyledon vascular tissue pattern formation	1.56E-02
93	GO:0010102: lateral root morphogenesis	1.56E-02
94	GO:0009691: cytokinin biosynthetic process	1.56E-02
95	GO:0010223: secondary shoot formation	1.70E-02
96	GO:0009266: response to temperature stimulus	1.70E-02
97	GO:0006302: double-strand break repair	1.70E-02
98	GO:0048467: gynoecium development	1.70E-02
99	GO:0042546: cell wall biogenesis	1.72E-02
100	GO:0090351: seedling development	1.84E-02
101	GO:0009636: response to toxic substance	1.86E-02
102	GO:0006863: purine nucleobase transport	1.99E-02
103	GO:0000162: tryptophan biosynthetic process	1.99E-02
104	GO:0005992: trehalose biosynthetic process	2.14E-02
105	GO:0006338: chromatin remodeling	2.14E-02
106	GO:0006418: tRNA aminoacylation for protein translation	2.30E-02
107	GO:0016114: terpenoid biosynthetic process	2.46E-02
108	GO:0010431: seed maturation	2.46E-02
109	GO:0006306: DNA methylation	2.46E-02
110	GO:0051321: meiotic cell cycle	2.46E-02
111	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.63E-02
112	GO:0048367: shoot system development	2.73E-02
113	GO:0001944: vasculature development	2.79E-02
114	GO:0009625: response to insect	2.79E-02
115	GO:0009693: ethylene biosynthetic process	2.79E-02
116	GO:0009686: gibberellin biosynthetic process	2.79E-02
117	GO:0010082: regulation of root meristem growth	2.79E-02
118	GO:0016569: covalent chromatin modification	2.99E-02
119	GO:0016117: carotenoid biosynthetic process	3.14E-02
120	GO:0070417: cellular response to cold	3.14E-02
121	GO:0009416: response to light stimulus	3.19E-02
122	GO:0080022: primary root development	3.32E-02
123	GO:0008033: tRNA processing	3.32E-02
124	GO:0010118: stomatal movement	3.32E-02
125	GO:0006662: glycerol ether metabolic process	3.50E-02
126	GO:0010182: sugar mediated signaling pathway	3.50E-02
127	GO:0009741: response to brassinosteroid	3.50E-02
128	GO:0010268: brassinosteroid homeostasis	3.50E-02
129	GO:0010305: leaf vascular tissue pattern formation	3.50E-02
130	GO:0048544: recognition of pollen	3.69E-02
131	GO:0008654: phospholipid biosynthetic process	3.87E-02
132	GO:0009749: response to glucose	3.87E-02
133	GO:0071554: cell wall organization or biogenesis	4.07E-02
134	GO:0000302: response to reactive oxygen species	4.07E-02
135	GO:0032502: developmental process	4.26E-02
136	GO:0010583: response to cyclopentenone	4.26E-02
137	GO:0016032: viral process	4.26E-02
138	GO:0019761: glucosinolate biosynthetic process	4.26E-02
139	GO:0009845: seed germination	4.29E-02
140	GO:1901657: glycosyl compound metabolic process	4.46E-02
141	GO:0006464: cellular protein modification process	4.66E-02
142	GO:0019760: glucosinolate metabolic process	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0008395: steroid hydroxylase activity	3.99E-04
7	GO:0004832: valine-tRNA ligase activity	3.99E-04
8	GO:0042736: NADH kinase activity	3.99E-04
9	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.99E-04
10	GO:0042586: peptide deformylase activity	3.99E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	3.99E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	3.99E-04
13	GO:0004518: nuclease activity	7.26E-04
14	GO:0017118: lipoyltransferase activity	8.66E-04
15	GO:0003852: 2-isopropylmalate synthase activity	8.66E-04
16	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.66E-04
17	GO:0016415: octanoyltransferase activity	8.66E-04
18	GO:0008805: carbon-monoxide oxygenase activity	8.66E-04
19	GO:0050736: O-malonyltransferase activity	8.66E-04
20	GO:0009884: cytokinin receptor activity	8.66E-04
21	GO:0005034: osmosensor activity	1.40E-03
22	GO:0080031: methyl salicylate esterase activity	2.03E-03
23	GO:0001872: (1->3)-beta-D-glucan binding	2.03E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.03E-03
25	GO:0005345: purine nucleobase transmembrane transporter activity	2.38E-03
26	GO:0019199: transmembrane receptor protein kinase activity	2.73E-03
27	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.49E-03
28	GO:0004523: RNA-DNA hybrid ribonuclease activity	3.49E-03
29	GO:0016688: L-ascorbate peroxidase activity	4.32E-03
30	GO:0004605: phosphatidate cytidylyltransferase activity	4.32E-03
31	GO:0080030: methyl indole-3-acetate esterase activity	4.32E-03
32	GO:0004709: MAP kinase kinase kinase activity	4.32E-03
33	GO:0004130: cytochrome-c peroxidase activity	4.32E-03
34	GO:0019900: kinase binding	5.20E-03
35	GO:0016832: aldehyde-lyase activity	5.20E-03
36	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	5.20E-03
37	GO:0003951: NAD+ kinase activity	8.21E-03
38	GO:0003723: RNA binding	8.41E-03
39	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.31E-03
40	GO:0004871: signal transducer activity	1.06E-02
41	GO:0004673: protein histidine kinase activity	1.17E-02
42	GO:0004805: trehalose-phosphatase activity	1.17E-02
43	GO:0008047: enzyme activator activity	1.17E-02
44	GO:0004519: endonuclease activity	1.54E-02
45	GO:0000155: phosphorelay sensor kinase activity	1.56E-02
46	GO:0009982: pseudouridine synthase activity	1.56E-02
47	GO:0003725: double-stranded RNA binding	1.56E-02
48	GO:0043621: protein self-association	1.79E-02
49	GO:0008061: chitin binding	1.84E-02
50	GO:0003712: transcription cofactor activity	1.84E-02
51	GO:0031418: L-ascorbic acid binding	2.14E-02
52	GO:0016301: kinase activity	2.15E-02
53	GO:0043424: protein histidine kinase binding	2.30E-02
54	GO:0016298: lipase activity	2.31E-02
55	GO:0004176: ATP-dependent peptidase activity	2.46E-02
56	GO:0033612: receptor serine/threonine kinase binding	2.46E-02
57	GO:0003964: RNA-directed DNA polymerase activity	2.46E-02
58	GO:0008408: 3'-5' exonuclease activity	2.46E-02
59	GO:0010333: terpene synthase activity	2.46E-02
60	GO:0003727: single-stranded RNA binding	2.96E-02
61	GO:0016874: ligase activity	2.99E-02
62	GO:0047134: protein-disulfide reductase activity	3.14E-02
63	GO:0004812: aminoacyl-tRNA ligase activity	3.14E-02
64	GO:0015035: protein disulfide oxidoreductase activity	3.27E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.50E-02
66	GO:0008080: N-acetyltransferase activity	3.50E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	3.69E-02
68	GO:0042803: protein homodimerization activity	3.85E-02
69	GO:0019843: rRNA binding	3.97E-02
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.07E-02
71	GO:0004722: protein serine/threonine phosphatase activity	4.08E-02
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.08E-02
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.46E-02
74	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.51E-02
75	GO:0016759: cellulose synthase activity	4.66E-02
76	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.76E-02
77	GO:0005200: structural constituent of cytoskeleton	4.86E-02
78	GO:0008237: metallopeptidase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0000791: euchromatin	3.99E-04
4	GO:0009501: amyloplast	4.62E-04
5	GO:0030870: Mre11 complex	8.66E-04
6	GO:0009513: etioplast	8.66E-04
7	GO:0009509: chromoplast	1.40E-03
8	GO:0030139: endocytic vesicle	1.40E-03
9	GO:0032585: multivesicular body membrane	2.03E-03
10	GO:0000795: synaptonemal complex	3.49E-03
11	GO:0009986: cell surface	6.15E-03
12	GO:0005886: plasma membrane	8.65E-03
13	GO:0009507: chloroplast	1.32E-02
14	GO:0030095: chloroplast photosystem II	1.70E-02
15	GO:0005875: microtubule associated complex	1.99E-02
16	GO:0009654: photosystem II oxygen evolving complex	2.30E-02
17	GO:0009532: plastid stroma	2.46E-02
18	GO:0019898: extrinsic component of membrane	3.87E-02
19	GO:0009504: cell plate	3.87E-02
20	GO:0031965: nuclear membrane	3.87E-02
21	GO:0000785: chromatin	4.26E-02