co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0001778: plasma membrane repair	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0009733: response to auxin	1.87E-05
8	GO:0046620: regulation of organ growth	3.64E-05
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.34E-04
10	GO:0009734: auxin-activated signaling pathway	4.79E-04
11	GO:0043686: co-translational protein modification	5.57E-04
12	GO:0034757: negative regulation of iron ion transport	5.57E-04
13	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.57E-04
14	GO:0006285: base-excision repair, AP site formation	5.57E-04
15	GO:0009686: gibberellin biosynthetic process	6.39E-04
16	GO:0009926: auxin polar transport	9.64E-04
17	GO:0010271: regulation of chlorophyll catabolic process	1.20E-03
18	GO:0009786: regulation of asymmetric cell division	1.20E-03
19	GO:0046740: transport of virus in host, cell to cell	1.20E-03
20	GO:0031648: protein destabilization	1.20E-03
21	GO:2000123: positive regulation of stomatal complex development	1.20E-03
22	GO:0071398: cellular response to fatty acid	1.97E-03
23	GO:0048575: short-day photoperiodism, flowering	1.97E-03
24	GO:0045910: negative regulation of DNA recombination	1.97E-03
25	GO:0090506: axillary shoot meristem initiation	1.97E-03
26	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.97E-03
27	GO:0080117: secondary growth	1.97E-03
28	GO:0010582: floral meristem determinacy	2.00E-03
29	GO:0010321: regulation of vegetative phase change	2.86E-03
30	GO:0010371: regulation of gibberellin biosynthetic process	2.86E-03
31	GO:0051513: regulation of monopolar cell growth	2.86E-03
32	GO:0032456: endocytic recycling	2.86E-03
33	GO:0034059: response to anoxia	2.86E-03
34	GO:1990019: protein storage vacuole organization	2.86E-03
35	GO:0006612: protein targeting to membrane	2.86E-03
36	GO:0006863: purine nucleobase transport	3.21E-03
37	GO:2000038: regulation of stomatal complex development	3.85E-03
38	GO:0042991: transcription factor import into nucleus	3.85E-03
39	GO:0009956: radial pattern formation	3.85E-03
40	GO:0009755: hormone-mediated signaling pathway	3.85E-03
41	GO:0048497: maintenance of floral organ identity	4.94E-03
42	GO:0031365: N-terminal protein amino acid modification	4.94E-03
43	GO:0009107: lipoate biosynthetic process	4.94E-03
44	GO:0010438: cellular response to sulfur starvation	4.94E-03
45	GO:0010158: abaxial cell fate specification	4.94E-03
46	GO:0010375: stomatal complex patterning	4.94E-03
47	GO:0009696: salicylic acid metabolic process	4.94E-03
48	GO:0045487: gibberellin catabolic process	4.94E-03
49	GO:0080110: sporopollenin biosynthetic process	4.94E-03
50	GO:0071215: cellular response to abscisic acid stimulus	5.18E-03
51	GO:0040008: regulation of growth	5.62E-03
52	GO:0006284: base-excision repair	5.63E-03
53	GO:0048831: regulation of shoot system development	6.12E-03
54	GO:0003006: developmental process involved in reproduction	6.12E-03
55	GO:0010942: positive regulation of cell death	6.12E-03
56	GO:0010358: leaf shaping	6.12E-03
57	GO:0016554: cytidine to uridine editing	6.12E-03
58	GO:0009913: epidermal cell differentiation	6.12E-03
59	GO:1902456: regulation of stomatal opening	6.12E-03
60	GO:0010087: phloem or xylem histogenesis	6.61E-03
61	GO:0010305: leaf vascular tissue pattern formation	7.13E-03
62	GO:0009739: response to gibberellin	7.16E-03
63	GO:0009612: response to mechanical stimulus	7.40E-03
64	GO:0048509: regulation of meristem development	7.40E-03
65	GO:0030488: tRNA methylation	7.40E-03
66	GO:0031930: mitochondria-nucleus signaling pathway	7.40E-03
67	GO:0009736: cytokinin-activated signaling pathway	7.72E-03
68	GO:0048825: cotyledon development	8.23E-03
69	GO:0006351: transcription, DNA-templated	8.35E-03
70	GO:0010050: vegetative phase change	8.76E-03
71	GO:0010098: suspensor development	8.76E-03
72	GO:0071554: cell wall organization or biogenesis	8.82E-03
73	GO:0032502: developmental process	9.43E-03
74	GO:0010583: response to cyclopentenone	9.43E-03
75	GO:0006468: protein phosphorylation	9.46E-03
76	GO:0009850: auxin metabolic process	1.02E-02
77	GO:0009690: cytokinin metabolic process	1.02E-02
78	GO:0009704: de-etiolation	1.02E-02
79	GO:2000070: regulation of response to water deprivation	1.02E-02
80	GO:0009819: drought recovery	1.02E-02
81	GO:0042255: ribosome assembly	1.02E-02
82	GO:0006353: DNA-templated transcription, termination	1.02E-02
83	GO:0006402: mRNA catabolic process	1.02E-02
84	GO:0010439: regulation of glucosinolate biosynthetic process	1.02E-02
85	GO:0009567: double fertilization forming a zygote and endosperm	1.07E-02
86	GO:0032544: plastid translation	1.17E-02
87	GO:0007186: G-protein coupled receptor signaling pathway	1.17E-02
88	GO:0009657: plastid organization	1.17E-02
89	GO:0000373: Group II intron splicing	1.33E-02
90	GO:0048589: developmental growth	1.33E-02
91	GO:0009056: catabolic process	1.33E-02
92	GO:0048507: meristem development	1.33E-02
93	GO:0051865: protein autoubiquitination	1.33E-02
94	GO:1900865: chloroplast RNA modification	1.50E-02
95	GO:0048573: photoperiodism, flowering	1.51E-02
96	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.68E-02
97	GO:0048829: root cap development	1.68E-02
98	GO:0009641: shade avoidance	1.68E-02
99	GO:0006298: mismatch repair	1.68E-02
100	GO:0010192: mucilage biosynthetic process	1.68E-02
101	GO:0000160: phosphorelay signal transduction system	1.76E-02
102	GO:0009682: induced systemic resistance	1.86E-02
103	GO:0010152: pollen maturation	2.05E-02
104	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.05E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	2.13E-02
106	GO:0045892: negative regulation of transcription, DNA-templated	2.18E-02
107	GO:0010628: positive regulation of gene expression	2.24E-02
108	GO:2000028: regulation of photoperiodism, flowering	2.24E-02
109	GO:0009767: photosynthetic electron transport chain	2.24E-02
110	GO:0010588: cotyledon vascular tissue pattern formation	2.24E-02
111	GO:0010102: lateral root morphogenesis	2.24E-02
112	GO:0010223: secondary shoot formation	2.44E-02
113	GO:0009887: animal organ morphogenesis	2.44E-02
114	GO:0010540: basipetal auxin transport	2.44E-02
115	GO:0006302: double-strand break repair	2.44E-02
116	GO:0048467: gynoecium development	2.44E-02
117	GO:0010020: chloroplast fission	2.44E-02
118	GO:0009933: meristem structural organization	2.44E-02
119	GO:0010207: photosystem II assembly	2.44E-02
120	GO:0006631: fatty acid metabolic process	2.54E-02
121	GO:0090351: seedling development	2.65E-02
122	GO:0009825: multidimensional cell growth	2.65E-02
123	GO:0016567: protein ubiquitination	2.66E-02
124	GO:0009833: plant-type primary cell wall biogenesis	2.86E-02
125	GO:0005992: trehalose biosynthetic process	3.08E-02
126	GO:0009636: response to toxic substance	3.09E-02
127	GO:0071555: cell wall organization	3.14E-02
128	GO:0016114: terpenoid biosynthetic process	3.54E-02
129	GO:0010431: seed maturation	3.54E-02
130	GO:0051321: meiotic cell cycle	3.54E-02
131	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.78E-02
132	GO:0010082: regulation of root meristem growth	4.02E-02
133	GO:0001944: vasculature development	4.02E-02
134	GO:0009625: response to insect	4.02E-02
135	GO:0009693: ethylene biosynthetic process	4.02E-02
136	GO:0009909: regulation of flower development	4.10E-02
137	GO:0009658: chloroplast organization	4.18E-02
138	GO:0010584: pollen exine formation	4.26E-02
139	GO:0048443: stamen development	4.26E-02
140	GO:0048367: shoot system development	4.51E-02
141	GO:0070417: cellular response to cold	4.51E-02
142	GO:0000271: polysaccharide biosynthetic process	4.77E-02
143	GO:0080022: primary root development	4.77E-02
144	GO:0010118: stomatal movement	4.77E-02
145	GO:0009740: gibberellic acid mediated signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0001872: (1->3)-beta-D-glucan binding	9.62E-05
5	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	5.57E-04
6	GO:0010012: steroid 22-alpha hydroxylase activity	5.57E-04
7	GO:0005227: calcium activated cation channel activity	5.57E-04
8	GO:0042586: peptide deformylase activity	5.57E-04
9	GO:0017118: lipoyltransferase activity	1.20E-03
10	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.20E-03
11	GO:0010296: prenylcysteine methylesterase activity	1.20E-03
12	GO:0016415: octanoyltransferase activity	1.20E-03
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.20E-03
14	GO:0008805: carbon-monoxide oxygenase activity	1.20E-03
15	GO:0050736: O-malonyltransferase activity	1.20E-03
16	GO:1901981: phosphatidylinositol phosphate binding	1.20E-03
17	GO:0009884: cytokinin receptor activity	1.20E-03
18	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.97E-03
19	GO:0005034: osmosensor activity	1.97E-03
20	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.97E-03
21	GO:0080031: methyl salicylate esterase activity	2.86E-03
22	GO:0045544: gibberellin 20-oxidase activity	2.86E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.86E-03
24	GO:0010011: auxin binding	3.85E-03
25	GO:0019104: DNA N-glycosylase activity	3.85E-03
26	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.85E-03
27	GO:0019199: transmembrane receptor protein kinase activity	3.85E-03
28	GO:0005345: purine nucleobase transmembrane transporter activity	3.93E-03
29	GO:0004674: protein serine/threonine kinase activity	4.60E-03
30	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.94E-03
31	GO:0008725: DNA-3-methyladenine glycosylase activity	4.94E-03
32	GO:0043621: protein self-association	5.83E-03
33	GO:0030983: mismatched DNA binding	6.12E-03
34	GO:0080030: methyl indole-3-acetate esterase activity	6.12E-03
35	GO:0004709: MAP kinase kinase kinase activity	6.12E-03
36	GO:0004871: signal transducer activity	6.74E-03
37	GO:0019900: kinase binding	7.40E-03
38	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.40E-03
39	GO:0016832: aldehyde-lyase activity	7.40E-03
40	GO:0016759: cellulose synthase activity	1.07E-02
41	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.21E-02
42	GO:0016413: O-acetyltransferase activity	1.21E-02
43	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.33E-02
44	GO:0030247: polysaccharide binding	1.51E-02
45	GO:0004673: protein histidine kinase activity	1.68E-02
46	GO:0004805: trehalose-phosphatase activity	1.68E-02
47	GO:0005096: GTPase activator activity	1.76E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.13E-02
49	GO:0000155: phosphorelay sensor kinase activity	2.24E-02
50	GO:0004722: protein serine/threonine phosphatase activity	2.44E-02
51	GO:0003712: transcription cofactor activity	2.65E-02
52	GO:0004672: protein kinase activity	2.72E-02
53	GO:0008134: transcription factor binding	3.08E-02
54	GO:0051536: iron-sulfur cluster binding	3.08E-02
55	GO:0031418: L-ascorbic acid binding	3.08E-02
56	GO:0009055: electron carrier activity	3.21E-02
57	GO:0004519: endonuclease activity	3.28E-02
58	GO:0042802: identical protein binding	3.28E-02
59	GO:0015079: potassium ion transmembrane transporter activity	3.31E-02
60	GO:0043424: protein histidine kinase binding	3.31E-02
61	GO:0016301: kinase activity	3.40E-02
62	GO:0033612: receptor serine/threonine kinase binding	3.54E-02
63	GO:0003964: RNA-directed DNA polymerase activity	3.54E-02
64	GO:0008408: 3'-5' exonuclease activity	3.54E-02
65	GO:0010333: terpene synthase activity	3.54E-02
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.78E-02
67	GO:0003677: DNA binding	3.81E-02
68	GO:0003690: double-stranded DNA binding	3.83E-02
69	GO:0016760: cellulose synthase (UDP-forming) activity	4.02E-02
70	GO:0003777: microtubule motor activity	4.10E-02
71	GO:0003727: single-stranded RNA binding	4.26E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	4.28E-02
73	GO:0016874: ligase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0032541: cortical endoplasmic reticulum	5.57E-04
5	GO:0000791: euchromatin	5.57E-04
6	GO:0030870: Mre11 complex	1.20E-03
7	GO:0030139: endocytic vesicle	1.97E-03
8	GO:0005886: plasma membrane	2.56E-03
9	GO:0009531: secondary cell wall	2.86E-03
10	GO:0032585: multivesicular body membrane	2.86E-03
11	GO:0009544: chloroplast ATP synthase complex	3.85E-03
12	GO:0009898: cytoplasmic side of plasma membrane	3.85E-03
13	GO:0009654: photosystem II oxygen evolving complex	3.93E-03
14	GO:0000795: synaptonemal complex	4.94E-03
15	GO:0019898: extrinsic component of membrane	8.23E-03
16	GO:0009986: cell surface	8.76E-03
17	GO:0042644: chloroplast nucleoid	1.33E-02
18	GO:0030095: chloroplast photosystem II	2.44E-02
19	GO:0005875: microtubule associated complex	2.86E-02
20	GO:0046658: anchored component of plasma membrane	3.45E-02
21	GO:0009532: plastid stroma	3.54E-02
22	GO:0015629: actin cytoskeleton	4.02E-02
23	GO:0005871: kinesin complex	4.51E-02