Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G01110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045184: establishment of protein localization0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:1903224: regulation of endodermal cell differentiation0.00E+00
7GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.18E-05
8GO:2000012: regulation of auxin polar transport1.51E-04
9GO:0048497: maintenance of floral organ identity1.96E-04
10GO:0010027: thylakoid membrane organization1.97E-04
11GO:0015995: chlorophyll biosynthetic process2.60E-04
12GO:0016554: cytidine to uridine editing2.78E-04
13GO:0009416: response to light stimulus4.65E-04
14GO:0046520: sphingoid biosynthetic process4.76E-04
15GO:0043266: regulation of potassium ion transport4.76E-04
16GO:0010442: guard cell morphogenesis4.76E-04
17GO:0010063: positive regulation of trichoblast fate specification4.76E-04
18GO:0010480: microsporocyte differentiation4.76E-04
19GO:2000021: regulation of ion homeostasis4.76E-04
20GO:0035987: endodermal cell differentiation4.76E-04
21GO:1902458: positive regulation of stomatal opening4.76E-04
22GO:0015904: tetracycline transport4.76E-04
23GO:0005991: trehalose metabolic process4.76E-04
24GO:0000305: response to oxygen radical4.76E-04
25GO:0006419: alanyl-tRNA aminoacylation4.76E-04
26GO:0042659: regulation of cell fate specification4.76E-04
27GO:0070509: calcium ion import4.76E-04
28GO:0030198: extracellular matrix organization4.76E-04
29GO:0006438: valyl-tRNA aminoacylation4.76E-04
30GO:0090558: plant epidermis development4.76E-04
31GO:0048437: floral organ development4.78E-04
32GO:0009790: embryo development6.97E-04
33GO:0010305: leaf vascular tissue pattern formation7.08E-04
34GO:0010182: sugar mediated signaling pathway7.08E-04
35GO:0009734: auxin-activated signaling pathway9.39E-04
36GO:0009451: RNA modification9.75E-04
37GO:0010583: response to cyclopentenone1.00E-03
38GO:0006432: phenylalanyl-tRNA aminoacylation1.02E-03
39GO:0018026: peptidyl-lysine monomethylation1.02E-03
40GO:0071497: cellular response to freezing1.02E-03
41GO:0080009: mRNA methylation1.02E-03
42GO:0009786: regulation of asymmetric cell division1.02E-03
43GO:0001682: tRNA 5'-leader removal1.02E-03
44GO:1903426: regulation of reactive oxygen species biosynthetic process1.02E-03
45GO:0006568: tryptophan metabolic process1.02E-03
46GO:2000123: positive regulation of stomatal complex development1.02E-03
47GO:0052541: plant-type cell wall cellulose metabolic process1.02E-03
48GO:0060359: response to ammonium ion1.02E-03
49GO:0048255: mRNA stabilization1.02E-03
50GO:1900865: chloroplast RNA modification1.02E-03
51GO:1901959: positive regulation of cutin biosynthetic process1.02E-03
52GO:0048829: root cap development1.19E-03
53GO:1904278: positive regulation of wax biosynthetic process1.67E-03
54GO:0090153: regulation of sphingolipid biosynthetic process1.67E-03
55GO:0043157: response to cation stress1.67E-03
56GO:0072661: protein targeting to plasma membrane1.67E-03
57GO:0030261: chromosome condensation1.67E-03
58GO:0033591: response to L-ascorbic acid1.67E-03
59GO:0090708: specification of plant organ axis polarity1.67E-03
60GO:0010588: cotyledon vascular tissue pattern formation1.79E-03
61GO:0009658: chloroplast organization2.02E-03
62GO:0010207: photosystem II assembly2.02E-03
63GO:0010020: chloroplast fission2.02E-03
64GO:0070588: calcium ion transmembrane transport2.26E-03
65GO:0016556: mRNA modification2.42E-03
66GO:0043572: plastid fission2.42E-03
67GO:0010371: regulation of gibberellin biosynthetic process2.42E-03
68GO:0010071: root meristem specification2.42E-03
69GO:0007231: osmosensory signaling pathway2.42E-03
70GO:0009102: biotin biosynthetic process2.42E-03
71GO:0010239: chloroplast mRNA processing2.42E-03
72GO:0019048: modulation by virus of host morphology or physiology2.42E-03
73GO:0009647: skotomorphogenesis2.42E-03
74GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.42E-03
75GO:0031048: chromatin silencing by small RNA2.42E-03
76GO:0006071: glycerol metabolic process2.52E-03
77GO:0006833: water transport2.52E-03
78GO:0009793: embryo development ending in seed dormancy3.00E-03
79GO:0008295: spermidine biosynthetic process3.26E-03
80GO:0006749: glutathione metabolic process3.26E-03
81GO:1901141: regulation of lignin biosynthetic process3.26E-03
82GO:0010109: regulation of photosynthesis3.26E-03
83GO:0022622: root system development3.26E-03
84GO:0030104: water homeostasis3.26E-03
85GO:0033500: carbohydrate homeostasis3.26E-03
86GO:2000038: regulation of stomatal complex development3.26E-03
87GO:0045723: positive regulation of fatty acid biosynthetic process3.26E-03
88GO:0051567: histone H3-K9 methylation3.26E-03
89GO:0009640: photomorphogenesis3.87E-03
90GO:0040008: regulation of growth3.88E-03
91GO:0045038: protein import into chloroplast thylakoid membrane4.18E-03
92GO:0016123: xanthophyll biosynthetic process4.18E-03
93GO:0010375: stomatal complex patterning4.18E-03
94GO:0006468: protein phosphorylation4.19E-03
95GO:0007166: cell surface receptor signaling pathway5.11E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline5.18E-03
97GO:0016458: gene silencing5.18E-03
98GO:0010405: arabinogalactan protein metabolic process5.18E-03
99GO:0010118: stomatal movement5.18E-03
100GO:0009959: negative gravitropism5.18E-03
101GO:0009913: epidermal cell differentiation5.18E-03
102GO:1902456: regulation of stomatal opening5.18E-03
103GO:0042793: transcription from plastid promoter5.18E-03
104GO:0007018: microtubule-based movement6.01E-03
105GO:0048280: vesicle fusion with Golgi apparatus6.24E-03
106GO:2000033: regulation of seed dormancy process6.24E-03
107GO:0030488: tRNA methylation6.24E-03
108GO:2000067: regulation of root morphogenesis6.24E-03
109GO:0042372: phylloquinone biosynthetic process6.24E-03
110GO:0006400: tRNA modification7.39E-03
111GO:0030307: positive regulation of cell growth7.39E-03
112GO:0032880: regulation of protein localization7.39E-03
113GO:0048528: post-embryonic root development7.39E-03
114GO:0010444: guard mother cell differentiation7.39E-03
115GO:0006605: protein targeting8.60E-03
116GO:0070413: trehalose metabolism in response to stress8.60E-03
117GO:2000070: regulation of response to water deprivation8.60E-03
118GO:0055075: potassium ion homeostasis8.60E-03
119GO:0000105: histidine biosynthetic process8.60E-03
120GO:0048564: photosystem I assembly8.60E-03
121GO:0009733: response to auxin9.31E-03
122GO:0051607: defense response to virus9.47E-03
123GO:0009742: brassinosteroid mediated signaling pathway9.59E-03
124GO:0006526: arginine biosynthetic process9.88E-03
125GO:0015996: chlorophyll catabolic process9.88E-03
126GO:0007186: G-protein coupled receptor signaling pathway9.88E-03
127GO:0009657: plastid organization9.88E-03
128GO:0048507: meristem development1.12E-02
129GO:0000373: Group II intron splicing1.12E-02
130GO:0000902: cell morphogenesis1.12E-02
131GO:0016311: dephosphorylation1.25E-02
132GO:0031425: chloroplast RNA processing1.26E-02
133GO:0071577: zinc II ion transmembrane transport1.26E-02
134GO:0009638: phototropism1.26E-02
135GO:0006779: porphyrin-containing compound biosynthetic process1.26E-02
136GO:0009098: leucine biosynthetic process1.26E-02
137GO:2000280: regulation of root development1.26E-02
138GO:0000160: phosphorelay signal transduction system1.38E-02
139GO:0030422: production of siRNA involved in RNA interference1.41E-02
140GO:0031627: telomeric loop formation1.41E-02
141GO:0010162: seed dormancy process1.41E-02
142GO:0009299: mRNA transcription1.41E-02
143GO:0006896: Golgi to vacuole transport1.41E-02
144GO:0006782: protoporphyrinogen IX biosynthetic process1.41E-02
145GO:0006415: translational termination1.56E-02
146GO:0048229: gametophyte development1.56E-02
147GO:0006816: calcium ion transport1.56E-02
148GO:0009773: photosynthetic electron transport in photosystem I1.56E-02
149GO:0009073: aromatic amino acid family biosynthetic process1.56E-02
150GO:0006865: amino acid transport1.59E-02
151GO:0045037: protein import into chloroplast stroma1.72E-02
152GO:0005975: carbohydrate metabolic process1.76E-02
153GO:0050826: response to freezing1.88E-02
154GO:0009718: anthocyanin-containing compound biosynthetic process1.88E-02
155GO:0010075: regulation of meristem growth1.88E-02
156GO:0009725: response to hormone1.88E-02
157GO:0030048: actin filament-based movement1.88E-02
158GO:0010628: positive regulation of gene expression1.88E-02
159GO:0010102: lateral root morphogenesis1.88E-02
160GO:0030001: metal ion transport1.90E-02
161GO:0009887: animal organ morphogenesis2.05E-02
162GO:0009934: regulation of meristem structural organization2.05E-02
163GO:0010030: positive regulation of seed germination2.23E-02
164GO:0030154: cell differentiation2.34E-02
165GO:0000162: tryptophan biosynthetic process2.41E-02
166GO:0005992: trehalose biosynthetic process2.59E-02
167GO:0080147: root hair cell development2.59E-02
168GO:0007017: microtubule-based process2.78E-02
169GO:0006825: copper ion transport2.78E-02
170GO:0051302: regulation of cell division2.78E-02
171GO:0019953: sexual reproduction2.78E-02
172GO:0006418: tRNA aminoacylation for protein translation2.78E-02
173GO:0010026: trichome differentiation2.78E-02
174GO:0009736: cytokinin-activated signaling pathway2.91E-02
175GO:0003333: amino acid transmembrane transport2.97E-02
176GO:0048511: rhythmic process2.97E-02
177GO:0010431: seed maturation2.97E-02
178GO:0006306: DNA methylation2.97E-02
179GO:0030245: cellulose catabolic process3.17E-02
180GO:0010082: regulation of root meristem growth3.37E-02
181GO:0048367: shoot system development3.55E-02
182GO:0010091: trichome branching3.58E-02
183GO:0042127: regulation of cell proliferation3.58E-02
184GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.79E-02
185GO:0042147: retrograde transport, endosome to Golgi3.79E-02
186GO:0048366: leaf development3.79E-02
187GO:0008284: positive regulation of cell proliferation3.79E-02
188GO:0080022: primary root development4.01E-02
189GO:0008033: tRNA processing4.01E-02
190GO:0034220: ion transmembrane transport4.01E-02
191GO:0010087: phloem or xylem histogenesis4.01E-02
192GO:0048653: anther development4.01E-02
193GO:0042631: cellular response to water deprivation4.01E-02
194GO:0048868: pollen tube development4.23E-02
195GO:0006342: chromatin silencing4.23E-02
196GO:0009958: positive gravitropism4.23E-02
197GO:0006520: cellular amino acid metabolic process4.23E-02
198GO:0006396: RNA processing4.25E-02
199GO:0042752: regulation of circadian rhythm4.45E-02
200GO:0009646: response to absence of light4.45E-02
201GO:0006623: protein targeting to vacuole4.68E-02
202GO:0048825: cotyledon development4.68E-02
203GO:0015979: photosynthesis4.74E-02
204GO:0006891: intra-Golgi vesicle-mediated transport4.91E-02
RankGO TermAdjusted P value
1GO:0047661: amino-acid racemase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
4GO:0005201: extracellular matrix structural constituent0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0001872: (1->3)-beta-D-glucan binding7.31E-05
8GO:0004519: endonuclease activity1.24E-04
9GO:0008158: hedgehog receptor activity4.76E-04
10GO:0005080: protein kinase C binding4.76E-04
11GO:0004832: valine-tRNA ligase activity4.76E-04
12GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.76E-04
13GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.76E-04
14GO:0000170: sphingosine hydroxylase activity4.76E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity4.76E-04
16GO:0004425: indole-3-glycerol-phosphate synthase activity4.76E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.76E-04
18GO:0004813: alanine-tRNA ligase activity4.76E-04
19GO:0009374: biotin binding4.76E-04
20GO:0008889: glycerophosphodiester phosphodiesterase activity8.70E-04
21GO:0003723: RNA binding9.26E-04
22GO:0004362: glutathione-disulfide reductase activity1.02E-03
23GO:0003852: 2-isopropylmalate synthase activity1.02E-03
24GO:0043425: bHLH transcription factor binding1.02E-03
25GO:0004766: spermidine synthase activity1.02E-03
26GO:0016630: protochlorophyllide reductase activity1.02E-03
27GO:0042284: sphingolipid delta-4 desaturase activity1.02E-03
28GO:0008493: tetracycline transporter activity1.02E-03
29GO:0004826: phenylalanine-tRNA ligase activity1.02E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.02E-03
31GO:0000049: tRNA binding1.57E-03
32GO:0016805: dipeptidase activity1.67E-03
33GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.67E-03
34GO:0015462: ATPase-coupled protein transmembrane transporter activity1.67E-03
35GO:0004180: carboxypeptidase activity1.67E-03
36GO:0005262: calcium channel activity1.79E-03
37GO:0035197: siRNA binding2.42E-03
38GO:0016851: magnesium chelatase activity2.42E-03
39GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.42E-03
40GO:0016149: translation release factor activity, codon specific2.42E-03
41GO:0005528: FK506 binding2.80E-03
42GO:0016279: protein-lysine N-methyltransferase activity3.26E-03
43GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.26E-03
44GO:0019199: transmembrane receptor protein kinase activity3.26E-03
45GO:0004176: ATP-dependent peptidase activity3.40E-03
46GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.74E-03
47GO:0003989: acetyl-CoA carboxylase activity4.18E-03
48GO:0004674: protein serine/threonine kinase activity4.71E-03
49GO:1990714: hydroxyproline O-galactosyltransferase activity5.18E-03
50GO:0004526: ribonuclease P activity5.18E-03
51GO:0016208: AMP binding5.18E-03
52GO:0001085: RNA polymerase II transcription factor binding5.59E-03
53GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.24E-03
54GO:0016832: aldehyde-lyase activity6.24E-03
55GO:0003777: microtubule motor activity6.45E-03
56GO:0005524: ATP binding6.51E-03
57GO:0000156: phosphorelay response regulator activity7.88E-03
58GO:0004650: polygalacturonase activity7.92E-03
59GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.73E-03
60GO:0008237: metallopeptidase activity8.92E-03
61GO:0016597: amino acid binding9.47E-03
62GO:0008173: RNA methyltransferase activity9.88E-03
63GO:0003747: translation release factor activity1.12E-02
64GO:0030247: polysaccharide binding1.18E-02
65GO:0015020: glucuronosyltransferase activity1.41E-02
66GO:0004222: metalloendopeptidase activity1.45E-02
67GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.52E-02
68GO:0003691: double-stranded telomeric DNA binding1.56E-02
69GO:0005089: Rho guanyl-nucleotide exchange factor activity1.56E-02
70GO:0004521: endoribonuclease activity1.72E-02
71GO:0000976: transcription regulatory region sequence-specific DNA binding1.72E-02
72GO:0003993: acid phosphatase activity1.75E-02
73GO:0031072: heat shock protein binding1.88E-02
74GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.05E-02
75GO:0003774: motor activity2.05E-02
76GO:0008083: growth factor activity2.05E-02
77GO:0008146: sulfotransferase activity2.23E-02
78GO:0035091: phosphatidylinositol binding2.33E-02
79GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.52E-02
80GO:0005385: zinc ion transmembrane transporter activity2.59E-02
81GO:0008324: cation transmembrane transporter activity2.78E-02
82GO:0033612: receptor serine/threonine kinase binding2.97E-02
83GO:0015171: amino acid transmembrane transporter activity3.22E-02
84GO:0008289: lipid binding3.29E-02
85GO:0003682: chromatin binding3.32E-02
86GO:0008810: cellulase activity3.37E-02
87GO:0003727: single-stranded RNA binding3.58E-02
88GO:0004812: aminoacyl-tRNA ligase activity3.79E-02
89GO:0052689: carboxylic ester hydrolase activity4.56E-02
90GO:0019901: protein kinase binding4.68E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast5.96E-06
2GO:0009570: chloroplast stroma6.93E-05
3GO:0005886: plasma membrane3.09E-04
4GO:0000796: condensin complex4.76E-04
5GO:0009534: chloroplast thylakoid7.40E-04
6GO:0000427: plastid-encoded plastid RNA polymerase complex1.02E-03
7GO:0046658: anchored component of plasma membrane1.53E-03
8GO:0030139: endocytic vesicle1.67E-03
9GO:0009317: acetyl-CoA carboxylase complex1.67E-03
10GO:0009528: plastid inner membrane1.67E-03
11GO:0019897: extrinsic component of plasma membrane1.67E-03
12GO:0010007: magnesium chelatase complex1.67E-03
13GO:0009941: chloroplast envelope1.78E-03
14GO:0009508: plastid chromosome1.79E-03
15GO:0005719: nuclear euchromatin2.42E-03
16GO:0032585: multivesicular body membrane2.42E-03
17GO:0030663: COPI-coated vesicle membrane3.26E-03
18GO:0009527: plastid outer membrane3.26E-03
19GO:0030286: dynein complex3.26E-03
20GO:0031225: anchored component of membrane4.13E-03
21GO:0005871: kinesin complex4.79E-03
22GO:0043231: intracellular membrane-bounded organelle6.95E-03
23GO:0009986: cell surface7.39E-03
24GO:0048226: Casparian strip8.60E-03
25GO:0012507: ER to Golgi transport vesicle membrane8.60E-03
26GO:0009295: nucleoid8.92E-03
27GO:0000783: nuclear telomere cap complex9.88E-03
28GO:0005667: transcription factor complex1.12E-02
29GO:0009543: chloroplast thylakoid lumen1.19E-02
30GO:0015030: Cajal body1.26E-02
31GO:0000418: DNA-directed RNA polymerase IV complex1.41E-02
32GO:0016459: myosin complex1.41E-02
33GO:0030125: clathrin vesicle coat1.41E-02
34GO:0005884: actin filament1.56E-02
35GO:0090404: pollen tube tip1.56E-02
36GO:0030095: chloroplast photosystem II2.05E-02
37GO:0009654: photosystem II oxygen evolving complex2.78E-02
38GO:0009532: plastid stroma2.97E-02
39GO:0015629: actin cytoskeleton3.37E-02
40GO:0031969: chloroplast membrane4.04E-02
41GO:0009706: chloroplast inner membrane4.13E-02
42GO:0019898: extrinsic component of membrane4.68E-02
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Gene type



Gene DE type