Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G66310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006223: uracil salvage0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0006412: translation3.82E-14
7GO:0032544: plastid translation6.79E-12
8GO:0042254: ribosome biogenesis7.60E-10
9GO:0010027: thylakoid membrane organization2.11E-08
10GO:0015995: chlorophyll biosynthetic process6.38E-05
11GO:1904966: positive regulation of vitamin E biosynthetic process8.09E-05
12GO:1904964: positive regulation of phytol biosynthetic process8.09E-05
13GO:1902458: positive regulation of stomatal opening8.09E-05
14GO:0071588: hydrogen peroxide mediated signaling pathway8.09E-05
15GO:0010207: photosystem II assembly1.70E-04
16GO:0008616: queuosine biosynthetic process1.93E-04
17GO:1903426: regulation of reactive oxygen species biosynthetic process1.93E-04
18GO:1902326: positive regulation of chlorophyll biosynthetic process1.93E-04
19GO:0015979: photosynthesis2.91E-04
20GO:0090391: granum assembly3.24E-04
21GO:0009306: protein secretion3.84E-04
22GO:0042335: cuticle development4.48E-04
23GO:0006424: glutamyl-tRNA aminoacylation4.66E-04
24GO:1901332: negative regulation of lateral root development4.66E-04
25GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis4.66E-04
26GO:0051639: actin filament network formation4.66E-04
27GO:0009956: radial pattern formation6.21E-04
28GO:0051764: actin crosslink formation6.21E-04
29GO:0044206: UMP salvage6.21E-04
30GO:0032543: mitochondrial translation7.86E-04
31GO:0010236: plastoquinone biosynthetic process7.86E-04
32GO:0045038: protein import into chloroplast thylakoid membrane7.86E-04
33GO:0043097: pyrimidine nucleoside salvage7.86E-04
34GO:0009735: response to cytokinin9.11E-04
35GO:0006655: phosphatidylglycerol biosynthetic process9.59E-04
36GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway9.59E-04
37GO:0010358: leaf shaping9.59E-04
38GO:0006206: pyrimidine nucleobase metabolic process9.59E-04
39GO:0042372: phylloquinone biosynthetic process1.14E-03
40GO:0030488: tRNA methylation1.14E-03
41GO:0010019: chloroplast-nucleus signaling pathway1.14E-03
42GO:0009955: adaxial/abaxial pattern specification1.14E-03
43GO:1901259: chloroplast rRNA processing1.14E-03
44GO:0009772: photosynthetic electron transport in photosystem II1.34E-03
45GO:0010196: nonphotochemical quenching1.34E-03
46GO:0006605: protein targeting1.54E-03
47GO:2000070: regulation of response to water deprivation1.54E-03
48GO:0045010: actin nucleation1.54E-03
49GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.73E-03
50GO:0015996: chlorophyll catabolic process1.76E-03
51GO:0007186: G-protein coupled receptor signaling pathway1.76E-03
52GO:0006869: lipid transport2.33E-03
53GO:0009073: aromatic amino acid family biosynthetic process2.71E-03
54GO:0016024: CDP-diacylglycerol biosynthetic process2.97E-03
55GO:0045037: protein import into chloroplast stroma2.97E-03
56GO:0030036: actin cytoskeleton organization3.24E-03
57GO:0010540: basipetal auxin transport3.52E-03
58GO:0009933: meristem structural organization3.52E-03
59GO:0009825: multidimensional cell growth3.81E-03
60GO:0051017: actin filament bundle assembly4.40E-03
61GO:0009116: nucleoside metabolic process4.40E-03
62GO:0000027: ribosomal large subunit assembly4.40E-03
63GO:0007010: cytoskeleton organization4.40E-03
64GO:0006418: tRNA aminoacylation for protein translation4.70E-03
65GO:0000413: protein peptidyl-prolyl isomerization6.70E-03
66GO:0010182: sugar mediated signaling pathway7.06E-03
67GO:0009741: response to brassinosteroid7.06E-03
68GO:0010268: brassinosteroid homeostasis7.06E-03
69GO:0010305: leaf vascular tissue pattern formation7.06E-03
70GO:0007018: microtubule-based movement7.42E-03
71GO:0008654: phospholipid biosynthetic process7.79E-03
72GO:0000302: response to reactive oxygen species8.17E-03
73GO:0016132: brassinosteroid biosynthetic process8.17E-03
74GO:0032502: developmental process8.56E-03
75GO:0010090: trichome morphogenesis8.94E-03
76GO:0016125: sterol metabolic process9.34E-03
77GO:0016311: dephosphorylation1.23E-02
78GO:0048481: plant ovule development1.27E-02
79GO:0018298: protein-chromophore linkage1.27E-02
80GO:0009817: defense response to fungus, incompatible interaction1.27E-02
81GO:0010311: lateral root formation1.32E-02
82GO:0009631: cold acclimation1.41E-02
83GO:0009867: jasmonic acid mediated signaling pathway1.51E-02
84GO:0032259: methylation1.55E-02
85GO:0034599: cellular response to oxidative stress1.56E-02
86GO:0009926: auxin polar transport1.80E-02
87GO:0009965: leaf morphogenesis1.96E-02
88GO:0006364: rRNA processing2.23E-02
89GO:0009734: auxin-activated signaling pathway2.28E-02
90GO:0009742: brassinosteroid mediated signaling pathway2.99E-02
91GO:0042744: hydrogen peroxide catabolic process3.69E-02
92GO:0009790: embryo development3.76E-02
93GO:0006633: fatty acid biosynthetic process3.96E-02
94GO:0016036: cellular response to phosphate starvation4.02E-02
95GO:0040008: regulation of growth4.09E-02
96GO:0045490: pectin catabolic process4.23E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0019843: rRNA binding1.63E-18
10GO:0003735: structural constituent of ribosome6.34E-15
11GO:0010012: steroid 22-alpha hydroxylase activity8.09E-05
12GO:0016630: protochlorophyllide reductase activity1.93E-04
13GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.93E-04
14GO:0008479: queuine tRNA-ribosyltransferase activity1.93E-04
15GO:0030267: glyoxylate reductase (NADP) activity3.24E-04
16GO:0002161: aminoacyl-tRNA editing activity3.24E-04
17GO:0016851: magnesium chelatase activity4.66E-04
18GO:0004659: prenyltransferase activity6.21E-04
19GO:0004845: uracil phosphoribosyltransferase activity6.21E-04
20GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.21E-04
21GO:0043495: protein anchor6.21E-04
22GO:0003959: NADPH dehydrogenase activity7.86E-04
23GO:0004040: amidase activity7.86E-04
24GO:0016688: L-ascorbate peroxidase activity9.59E-04
25GO:0004605: phosphatidate cytidylyltransferase activity9.59E-04
26GO:0004130: cytochrome-c peroxidase activity9.59E-04
27GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.09E-03
28GO:0004849: uridine kinase activity1.14E-03
29GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.14E-03
30GO:0019899: enzyme binding1.34E-03
31GO:0004714: transmembrane receptor protein tyrosine kinase activity1.54E-03
32GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.03E-03
33GO:0000049: tRNA binding2.97E-03
34GO:0004565: beta-galactosidase activity3.24E-03
35GO:0008289: lipid binding4.11E-03
36GO:0051536: iron-sulfur cluster binding4.40E-03
37GO:0005528: FK506 binding4.40E-03
38GO:0030570: pectate lyase activity5.67E-03
39GO:0022891: substrate-specific transmembrane transporter activity5.67E-03
40GO:0008017: microtubule binding5.95E-03
41GO:0004812: aminoacyl-tRNA ligase activity6.35E-03
42GO:0008168: methyltransferase activity8.47E-03
43GO:0051015: actin filament binding8.94E-03
44GO:0016168: chlorophyll binding1.10E-02
45GO:0003993: acid phosphatase activity1.56E-02
46GO:0003777: microtubule motor activity2.40E-02
47GO:0016887: ATPase activity2.51E-02
48GO:0003779: actin binding2.81E-02
49GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.43E-02
50GO:0005525: GTP binding4.70E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009507: chloroplast2.89E-18
3GO:0009570: chloroplast stroma3.68E-18
4GO:0005840: ribosome4.66E-17
5GO:0009941: chloroplast envelope5.14E-17
6GO:0009535: chloroplast thylakoid membrane9.23E-11
7GO:0009534: chloroplast thylakoid9.17E-09
8GO:0009579: thylakoid1.64E-07
9GO:0009543: chloroplast thylakoid lumen4.09E-05
10GO:0009515: granal stacked thylakoid8.09E-05
11GO:0009536: plastid1.84E-04
12GO:0009528: plastid inner membrane3.24E-04
13GO:0010007: magnesium chelatase complex3.24E-04
14GO:0032432: actin filament bundle4.66E-04
15GO:0009527: plastid outer membrane6.21E-04
16GO:0031209: SCAR complex9.59E-04
17GO:0015934: large ribosomal subunit1.25E-03
18GO:0005874: microtubule1.58E-03
19GO:0031977: thylakoid lumen1.61E-03
20GO:0031969: chloroplast membrane1.65E-03
21GO:0005763: mitochondrial small ribosomal subunit1.98E-03
22GO:0005884: actin filament2.71E-03
23GO:0000311: plastid large ribosomal subunit2.97E-03
24GO:0000312: plastid small ribosomal subunit3.52E-03
25GO:0042651: thylakoid membrane4.70E-03
26GO:0009654: photosystem II oxygen evolving complex4.70E-03
27GO:0009532: plastid stroma5.02E-03
28GO:0016020: membrane5.64E-03
29GO:0005871: kinesin complex6.35E-03
30GO:0046658: anchored component of plasma membrane7.52E-03
31GO:0009523: photosystem II7.79E-03
32GO:0019898: extrinsic component of membrane7.79E-03
33GO:0010319: stromule9.75E-03
34GO:0009295: nucleoid9.75E-03
35GO:0031225: anchored component of membrane9.83E-03
36GO:0022625: cytosolic large ribosomal subunit1.15E-02
37GO:0009707: chloroplast outer membrane1.27E-02
38GO:0022626: cytosolic ribosome2.75E-02
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Gene type



Gene DE type