GO Enrichment Analysis of Co-expressed Genes with
AT5G65460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 2.16E-06 |
| 6 | GO:0015979: photosynthesis | 2.88E-06 |
| 7 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.14E-05 |
| 8 | GO:1904964: positive regulation of phytol biosynthetic process | 9.14E-05 |
| 9 | GO:0043686: co-translational protein modification | 9.14E-05 |
| 10 | GO:0051775: response to redox state | 9.14E-05 |
| 11 | GO:0071277: cellular response to calcium ion | 9.14E-05 |
| 12 | GO:0018298: protein-chromophore linkage | 9.51E-05 |
| 13 | GO:0009735: response to cytokinin | 2.02E-04 |
| 14 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.16E-04 |
| 15 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.16E-04 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.16E-04 |
| 17 | GO:0034755: iron ion transmembrane transport | 2.16E-04 |
| 18 | GO:0080005: photosystem stoichiometry adjustment | 2.16E-04 |
| 19 | GO:0006954: inflammatory response | 3.61E-04 |
| 20 | GO:0006000: fructose metabolic process | 3.61E-04 |
| 21 | GO:0009152: purine ribonucleotide biosynthetic process | 5.20E-04 |
| 22 | GO:0046653: tetrahydrofolate metabolic process | 5.20E-04 |
| 23 | GO:0006107: oxaloacetate metabolic process | 5.20E-04 |
| 24 | GO:0080170: hydrogen peroxide transmembrane transport | 5.20E-04 |
| 25 | GO:0006734: NADH metabolic process | 6.90E-04 |
| 26 | GO:0010021: amylopectin biosynthetic process | 6.90E-04 |
| 27 | GO:0009765: photosynthesis, light harvesting | 6.90E-04 |
| 28 | GO:0006109: regulation of carbohydrate metabolic process | 6.90E-04 |
| 29 | GO:0045727: positive regulation of translation | 6.90E-04 |
| 30 | GO:0015994: chlorophyll metabolic process | 6.90E-04 |
| 31 | GO:0032543: mitochondrial translation | 8.73E-04 |
| 32 | GO:0031365: N-terminal protein amino acid modification | 8.73E-04 |
| 33 | GO:0007623: circadian rhythm | 9.06E-04 |
| 34 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.07E-03 |
| 35 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.07E-03 |
| 36 | GO:0016554: cytidine to uridine editing | 1.07E-03 |
| 37 | GO:0009645: response to low light intensity stimulus | 1.49E-03 |
| 38 | GO:0009395: phospholipid catabolic process | 1.49E-03 |
| 39 | GO:0009704: de-etiolation | 1.72E-03 |
| 40 | GO:0016559: peroxisome fission | 1.72E-03 |
| 41 | GO:0009642: response to light intensity | 1.72E-03 |
| 42 | GO:0032544: plastid translation | 1.96E-03 |
| 43 | GO:0006002: fructose 6-phosphate metabolic process | 1.96E-03 |
| 44 | GO:0071482: cellular response to light stimulus | 1.96E-03 |
| 45 | GO:0090333: regulation of stomatal closure | 2.21E-03 |
| 46 | GO:0000373: Group II intron splicing | 2.21E-03 |
| 47 | GO:0009644: response to high light intensity | 2.21E-03 |
| 48 | GO:1900865: chloroplast RNA modification | 2.48E-03 |
| 49 | GO:0006364: rRNA processing | 2.75E-03 |
| 50 | GO:0043085: positive regulation of catalytic activity | 3.03E-03 |
| 51 | GO:0006879: cellular iron ion homeostasis | 3.03E-03 |
| 52 | GO:0006108: malate metabolic process | 3.63E-03 |
| 53 | GO:0006094: gluconeogenesis | 3.63E-03 |
| 54 | GO:0005986: sucrose biosynthetic process | 3.63E-03 |
| 55 | GO:0008152: metabolic process | 3.77E-03 |
| 56 | GO:0010020: chloroplast fission | 3.93E-03 |
| 57 | GO:0019253: reductive pentose-phosphate cycle | 3.93E-03 |
| 58 | GO:0010207: photosystem II assembly | 3.93E-03 |
| 59 | GO:0005985: sucrose metabolic process | 4.26E-03 |
| 60 | GO:0010025: wax biosynthetic process | 4.58E-03 |
| 61 | GO:0006833: water transport | 4.58E-03 |
| 62 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.27E-03 |
| 63 | GO:0008299: isoprenoid biosynthetic process | 5.27E-03 |
| 64 | GO:0006418: tRNA aminoacylation for protein translation | 5.27E-03 |
| 65 | GO:0016226: iron-sulfur cluster assembly | 5.98E-03 |
| 66 | GO:0006810: transport | 6.96E-03 |
| 67 | GO:0034220: ion transmembrane transport | 7.51E-03 |
| 68 | GO:0000413: protein peptidyl-prolyl isomerization | 7.51E-03 |
| 69 | GO:0006662: glycerol ether metabolic process | 7.91E-03 |
| 70 | GO:0019252: starch biosynthetic process | 8.74E-03 |
| 71 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 9.16E-03 |
| 72 | GO:0055085: transmembrane transport | 9.33E-03 |
| 73 | GO:0016032: viral process | 9.60E-03 |
| 74 | GO:0010027: thylakoid membrane organization | 1.19E-02 |
| 75 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.33E-02 |
| 76 | GO:0000160: phosphorelay signal transduction system | 1.48E-02 |
| 77 | GO:0009853: photorespiration | 1.69E-02 |
| 78 | GO:0034599: cellular response to oxidative stress | 1.75E-02 |
| 79 | GO:0006099: tricarboxylic acid cycle | 1.75E-02 |
| 80 | GO:0006629: lipid metabolic process | 1.91E-02 |
| 81 | GO:0006397: mRNA processing | 1.99E-02 |
| 82 | GO:0051707: response to other organism | 2.03E-02 |
| 83 | GO:0009736: cytokinin-activated signaling pathway | 2.51E-02 |
| 84 | GO:0006096: glycolytic process | 2.82E-02 |
| 85 | GO:0043086: negative regulation of catalytic activity | 2.82E-02 |
| 86 | GO:0005975: carbohydrate metabolic process | 2.85E-02 |
| 87 | GO:0009058: biosynthetic process | 3.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 3 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 6 | GO:0016168: chlorophyll binding | 6.94E-05 |
| 7 | GO:0070006: metalloaminopeptidase activity | 9.14E-05 |
| 8 | GO:0008746: NAD(P)+ transhydrogenase activity | 9.14E-05 |
| 9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 9.14E-05 |
| 10 | GO:0042586: peptide deformylase activity | 9.14E-05 |
| 11 | GO:0004565: beta-galactosidase activity | 1.77E-04 |
| 12 | GO:0047746: chlorophyllase activity | 2.16E-04 |
| 13 | GO:0033201: alpha-1,4-glucan synthase activity | 2.16E-04 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.16E-04 |
| 15 | GO:0008805: carbon-monoxide oxygenase activity | 2.16E-04 |
| 16 | GO:0008967: phosphoglycolate phosphatase activity | 2.16E-04 |
| 17 | GO:0004176: ATP-dependent peptidase activity | 3.47E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.61E-04 |
| 19 | GO:0070402: NADPH binding | 3.61E-04 |
| 20 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.61E-04 |
| 21 | GO:0004373: glycogen (starch) synthase activity | 3.61E-04 |
| 22 | GO:0002161: aminoacyl-tRNA editing activity | 3.61E-04 |
| 23 | GO:0022891: substrate-specific transmembrane transporter activity | 4.15E-04 |
| 24 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 5.20E-04 |
| 25 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 6.90E-04 |
| 26 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.90E-04 |
| 27 | GO:0043495: protein anchor | 6.90E-04 |
| 28 | GO:0009011: starch synthase activity | 6.90E-04 |
| 29 | GO:0016615: malate dehydrogenase activity | 1.07E-03 |
| 30 | GO:0030060: L-malate dehydrogenase activity | 1.27E-03 |
| 31 | GO:0019899: enzyme binding | 1.49E-03 |
| 32 | GO:0043022: ribosome binding | 1.72E-03 |
| 33 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.21E-03 |
| 34 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.38E-03 |
| 35 | GO:0005381: iron ion transmembrane transporter activity | 2.48E-03 |
| 36 | GO:0008047: enzyme activator activity | 2.75E-03 |
| 37 | GO:0004177: aminopeptidase activity | 3.03E-03 |
| 38 | GO:0047372: acylglycerol lipase activity | 3.03E-03 |
| 39 | GO:0008131: primary amine oxidase activity | 3.93E-03 |
| 40 | GO:0008266: poly(U) RNA binding | 3.93E-03 |
| 41 | GO:0031409: pigment binding | 4.58E-03 |
| 42 | GO:0051536: iron-sulfur cluster binding | 4.92E-03 |
| 43 | GO:0004857: enzyme inhibitor activity | 4.92E-03 |
| 44 | GO:0005528: FK506 binding | 4.92E-03 |
| 45 | GO:0043424: protein histidine kinase binding | 5.27E-03 |
| 46 | GO:0047134: protein-disulfide reductase activity | 7.11E-03 |
| 47 | GO:0004812: aminoacyl-tRNA ligase activity | 7.11E-03 |
| 48 | GO:0050662: coenzyme binding | 8.32E-03 |
| 49 | GO:0004791: thioredoxin-disulfide reductase activity | 8.32E-03 |
| 50 | GO:0016853: isomerase activity | 8.32E-03 |
| 51 | GO:0042802: identical protein binding | 8.51E-03 |
| 52 | GO:0000156: phosphorelay response regulator activity | 1.00E-02 |
| 53 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.00E-02 |
| 54 | GO:0016788: hydrolase activity, acting on ester bonds | 1.06E-02 |
| 55 | GO:0015250: water channel activity | 1.19E-02 |
| 56 | GO:0008233: peptidase activity | 1.27E-02 |
| 57 | GO:0004721: phosphoprotein phosphatase activity | 1.33E-02 |
| 58 | GO:0030145: manganese ion binding | 1.59E-02 |
| 59 | GO:0003993: acid phosphatase activity | 1.75E-02 |
| 60 | GO:0046872: metal ion binding | 1.78E-02 |
| 61 | GO:0003824: catalytic activity | 1.90E-02 |
| 62 | GO:0031625: ubiquitin protein ligase binding | 2.70E-02 |
| 63 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.02E-02 |
| 64 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.02E-02 |
| 65 | GO:0015035: protein disulfide oxidoreductase activity | 3.29E-02 |
| 66 | GO:0019843: rRNA binding | 3.78E-02 |
| 67 | GO:0016787: hydrolase activity | 4.36E-02 |
| 68 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.52E-02 |
| 69 | GO:0008017: microtubule binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.01E-34 |
| 4 | GO:0009570: chloroplast stroma | 4.03E-21 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.47E-16 |
| 6 | GO:0009941: chloroplast envelope | 1.78E-10 |
| 7 | GO:0009579: thylakoid | 1.85E-08 |
| 8 | GO:0009534: chloroplast thylakoid | 1.93E-08 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.61E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.78E-05 |
| 11 | GO:0009782: photosystem I antenna complex | 9.14E-05 |
| 12 | GO:0031977: thylakoid lumen | 1.72E-04 |
| 13 | GO:0010287: plastoglobule | 5.68E-04 |
| 14 | GO:0009523: photosystem II | 6.49E-04 |
| 15 | GO:0030529: intracellular ribonucleoprotein complex | 9.86E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.49E-03 |
| 17 | GO:0009501: amyloplast | 1.72E-03 |
| 18 | GO:0048046: apoplast | 2.37E-03 |
| 19 | GO:0030076: light-harvesting complex | 4.26E-03 |
| 20 | GO:0042651: thylakoid membrane | 5.27E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 5.27E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 8.74E-03 |
| 23 | GO:0010319: stromule | 1.09E-02 |
| 24 | GO:0016021: integral component of membrane | 1.21E-02 |
| 25 | GO:0005739: mitochondrion | 1.41E-02 |
| 26 | GO:0009707: chloroplast outer membrane | 1.43E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 3.22E-02 |
| 28 | GO:0005623: cell | 3.85E-02 |