GO Enrichment Analysis of Co-expressed Genes with
AT5G65220
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0034337: RNA folding | 0.00E+00 |
| 3 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 9 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 10 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 13 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 14 | GO:0006412: translation | 4.58E-16 |
| 15 | GO:0015979: photosynthesis | 6.56E-16 |
| 16 | GO:0042254: ribosome biogenesis | 8.03E-13 |
| 17 | GO:0032544: plastid translation | 6.88E-12 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 1.28E-10 |
| 19 | GO:0009773: photosynthetic electron transport in photosystem I | 1.01E-08 |
| 20 | GO:0010207: photosystem II assembly | 3.30E-08 |
| 21 | GO:0009735: response to cytokinin | 9.51E-08 |
| 22 | GO:0010027: thylakoid membrane organization | 3.13E-06 |
| 23 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.28E-06 |
| 24 | GO:0090391: granum assembly | 1.52E-05 |
| 25 | GO:0042335: cuticle development | 1.64E-05 |
| 26 | GO:0010206: photosystem II repair | 1.67E-05 |
| 27 | GO:0032543: mitochondrial translation | 9.62E-05 |
| 28 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.62E-05 |
| 29 | GO:1901259: chloroplast rRNA processing | 1.90E-04 |
| 30 | GO:0009772: photosynthetic electron transport in photosystem II | 2.48E-04 |
| 31 | GO:1902458: positive regulation of stomatal opening | 3.07E-04 |
| 32 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.07E-04 |
| 33 | GO:0043489: RNA stabilization | 3.07E-04 |
| 34 | GO:0000481: maturation of 5S rRNA | 3.07E-04 |
| 35 | GO:0042759: long-chain fatty acid biosynthetic process | 3.07E-04 |
| 36 | GO:0010205: photoinhibition | 5.47E-04 |
| 37 | GO:0009658: chloroplast organization | 6.38E-04 |
| 38 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 6.71E-04 |
| 39 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.71E-04 |
| 40 | GO:0034755: iron ion transmembrane transport | 6.71E-04 |
| 41 | GO:0018298: protein-chromophore linkage | 9.09E-04 |
| 42 | GO:0006006: glucose metabolic process | 9.50E-04 |
| 43 | GO:0019253: reductive pentose-phosphate cycle | 1.07E-03 |
| 44 | GO:0006000: fructose metabolic process | 1.09E-03 |
| 45 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.09E-03 |
| 46 | GO:0006518: peptide metabolic process | 1.09E-03 |
| 47 | GO:0010025: wax biosynthetic process | 1.33E-03 |
| 48 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.33E-03 |
| 49 | GO:0071484: cellular response to light intensity | 1.56E-03 |
| 50 | GO:0051639: actin filament network formation | 1.56E-03 |
| 51 | GO:0006424: glutamyl-tRNA aminoacylation | 1.56E-03 |
| 52 | GO:1901332: negative regulation of lateral root development | 1.56E-03 |
| 53 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.56E-03 |
| 54 | GO:2001141: regulation of RNA biosynthetic process | 1.56E-03 |
| 55 | GO:0051764: actin crosslink formation | 2.09E-03 |
| 56 | GO:0009765: photosynthesis, light harvesting | 2.09E-03 |
| 57 | GO:0045727: positive regulation of translation | 2.09E-03 |
| 58 | GO:0015994: chlorophyll metabolic process | 2.09E-03 |
| 59 | GO:0009306: protein secretion | 2.31E-03 |
| 60 | GO:0031365: N-terminal protein amino acid modification | 2.67E-03 |
| 61 | GO:0010236: plastoquinone biosynthetic process | 2.67E-03 |
| 62 | GO:0000413: protein peptidyl-prolyl isomerization | 2.70E-03 |
| 63 | GO:0042549: photosystem II stabilization | 3.30E-03 |
| 64 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.30E-03 |
| 65 | GO:0000470: maturation of LSU-rRNA | 3.30E-03 |
| 66 | GO:0032973: amino acid export | 3.30E-03 |
| 67 | GO:0009913: epidermal cell differentiation | 3.30E-03 |
| 68 | GO:0009409: response to cold | 3.33E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 3.97E-03 |
| 70 | GO:0009955: adaxial/abaxial pattern specification | 3.97E-03 |
| 71 | GO:0042372: phylloquinone biosynthetic process | 3.97E-03 |
| 72 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.97E-03 |
| 73 | GO:0017148: negative regulation of translation | 3.97E-03 |
| 74 | GO:0030488: tRNA methylation | 3.97E-03 |
| 75 | GO:0009854: oxidative photosynthetic carbon pathway | 3.97E-03 |
| 76 | GO:0043090: amino acid import | 4.68E-03 |
| 77 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.68E-03 |
| 78 | GO:0010196: nonphotochemical quenching | 4.68E-03 |
| 79 | GO:0006400: tRNA modification | 4.68E-03 |
| 80 | GO:0048564: photosystem I assembly | 5.44E-03 |
| 81 | GO:0008610: lipid biosynthetic process | 5.44E-03 |
| 82 | GO:0006605: protein targeting | 5.44E-03 |
| 83 | GO:0032508: DNA duplex unwinding | 5.44E-03 |
| 84 | GO:2000070: regulation of response to water deprivation | 5.44E-03 |
| 85 | GO:0045010: actin nucleation | 5.44E-03 |
| 86 | GO:0010492: maintenance of shoot apical meristem identity | 5.44E-03 |
| 87 | GO:0006002: fructose 6-phosphate metabolic process | 6.23E-03 |
| 88 | GO:0071482: cellular response to light stimulus | 6.23E-03 |
| 89 | GO:0015996: chlorophyll catabolic process | 6.23E-03 |
| 90 | GO:0007186: G-protein coupled receptor signaling pathway | 6.23E-03 |
| 91 | GO:0006869: lipid transport | 6.26E-03 |
| 92 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.07E-03 |
| 93 | GO:0048507: meristem development | 7.07E-03 |
| 94 | GO:0080144: amino acid homeostasis | 7.07E-03 |
| 95 | GO:0009631: cold acclimation | 7.83E-03 |
| 96 | GO:0006779: porphyrin-containing compound biosynthetic process | 7.94E-03 |
| 97 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.84E-03 |
| 98 | GO:0034599: cellular response to oxidative stress | 8.98E-03 |
| 99 | GO:0000038: very long-chain fatty acid metabolic process | 9.79E-03 |
| 100 | GO:0009073: aromatic amino acid family biosynthetic process | 9.79E-03 |
| 101 | GO:0043085: positive regulation of catalytic activity | 9.79E-03 |
| 102 | GO:0006879: cellular iron ion homeostasis | 9.79E-03 |
| 103 | GO:0006352: DNA-templated transcription, initiation | 9.79E-03 |
| 104 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.79E-03 |
| 105 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.08E-02 |
| 106 | GO:0045037: protein import into chloroplast stroma | 1.08E-02 |
| 107 | GO:0030036: actin cytoskeleton organization | 1.18E-02 |
| 108 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.18E-02 |
| 109 | GO:0006094: gluconeogenesis | 1.18E-02 |
| 110 | GO:0005986: sucrose biosynthetic process | 1.18E-02 |
| 111 | GO:0010143: cutin biosynthetic process | 1.28E-02 |
| 112 | GO:0005985: sucrose metabolic process | 1.39E-02 |
| 113 | GO:0071732: cellular response to nitric oxide | 1.39E-02 |
| 114 | GO:0006364: rRNA processing | 1.50E-02 |
| 115 | GO:0000027: ribosomal large subunit assembly | 1.62E-02 |
| 116 | GO:0051017: actin filament bundle assembly | 1.62E-02 |
| 117 | GO:0006418: tRNA aminoacylation for protein translation | 1.74E-02 |
| 118 | GO:0009416: response to light stimulus | 1.78E-02 |
| 119 | GO:0061077: chaperone-mediated protein folding | 1.86E-02 |
| 120 | GO:0031408: oxylipin biosynthetic process | 1.86E-02 |
| 121 | GO:0016114: terpenoid biosynthetic process | 1.86E-02 |
| 122 | GO:0035428: hexose transmembrane transport | 1.98E-02 |
| 123 | GO:0071369: cellular response to ethylene stimulus | 2.11E-02 |
| 124 | GO:0055085: transmembrane transport | 2.54E-02 |
| 125 | GO:0006457: protein folding | 2.61E-02 |
| 126 | GO:0010182: sugar mediated signaling pathway | 2.64E-02 |
| 127 | GO:0046323: glucose import | 2.64E-02 |
| 128 | GO:0006662: glycerol ether metabolic process | 2.64E-02 |
| 129 | GO:0015986: ATP synthesis coupled proton transport | 2.78E-02 |
| 130 | GO:0000302: response to reactive oxygen species | 3.07E-02 |
| 131 | GO:0009790: embryo development | 3.13E-02 |
| 132 | GO:0016032: viral process | 3.21E-02 |
| 133 | GO:0006633: fatty acid biosynthetic process | 3.36E-02 |
| 134 | GO:0030163: protein catabolic process | 3.36E-02 |
| 135 | GO:0071281: cellular response to iron ion | 3.36E-02 |
| 136 | GO:0010090: trichome morphogenesis | 3.36E-02 |
| 137 | GO:0009451: RNA modification | 3.78E-02 |
| 138 | GO:0009817: defense response to fungus, incompatible interaction | 4.81E-02 |
| 139 | GO:0010311: lateral root formation | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 7 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 8 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 9 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 10 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 11 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 12 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 13 | GO:0019843: rRNA binding | 1.12E-26 |
| 14 | GO:0003735: structural constituent of ribosome | 7.52E-18 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.03E-10 |
| 16 | GO:0005528: FK506 binding | 1.35E-09 |
| 17 | GO:0016851: magnesium chelatase activity | 1.55E-07 |
| 18 | GO:0043023: ribosomal large subunit binding | 3.40E-05 |
| 19 | GO:0043495: protein anchor | 6.10E-05 |
| 20 | GO:0008266: poly(U) RNA binding | 6.96E-05 |
| 21 | GO:0022891: substrate-specific transmembrane transporter activity | 1.98E-04 |
| 22 | GO:0019899: enzyme binding | 2.48E-04 |
| 23 | GO:0045485: omega-6 fatty acid desaturase activity | 3.07E-04 |
| 24 | GO:0047746: chlorophyllase activity | 6.71E-04 |
| 25 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.71E-04 |
| 26 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 6.71E-04 |
| 27 | GO:0016630: protochlorophyllide reductase activity | 6.71E-04 |
| 28 | GO:0016168: chlorophyll binding | 6.99E-04 |
| 29 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 1.09E-03 |
| 30 | GO:0002161: aminoacyl-tRNA editing activity | 1.09E-03 |
| 31 | GO:0008097: 5S rRNA binding | 1.56E-03 |
| 32 | GO:0004659: prenyltransferase activity | 2.09E-03 |
| 33 | GO:0001053: plastid sigma factor activity | 2.09E-03 |
| 34 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.09E-03 |
| 35 | GO:0016987: sigma factor activity | 2.09E-03 |
| 36 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.67E-03 |
| 37 | GO:0003959: NADPH dehydrogenase activity | 2.67E-03 |
| 38 | GO:0004040: amidase activity | 2.67E-03 |
| 39 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.30E-03 |
| 40 | GO:0004130: cytochrome-c peroxidase activity | 3.30E-03 |
| 41 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.30E-03 |
| 42 | GO:0016688: L-ascorbate peroxidase activity | 3.30E-03 |
| 43 | GO:0003729: mRNA binding | 4.10E-03 |
| 44 | GO:0008235: metalloexopeptidase activity | 4.68E-03 |
| 45 | GO:0008312: 7S RNA binding | 5.44E-03 |
| 46 | GO:0052747: sinapyl alcohol dehydrogenase activity | 5.44E-03 |
| 47 | GO:0043022: ribosome binding | 5.44E-03 |
| 48 | GO:0003723: RNA binding | 5.79E-03 |
| 49 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 6.23E-03 |
| 50 | GO:0008236: serine-type peptidase activity | 6.44E-03 |
| 51 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.77E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 7.94E-03 |
| 53 | GO:0008047: enzyme activator activity | 8.84E-03 |
| 54 | GO:0004177: aminopeptidase activity | 9.79E-03 |
| 55 | GO:0050661: NADP binding | 9.80E-03 |
| 56 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.05E-02 |
| 57 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 1.08E-02 |
| 58 | GO:0031072: heat shock protein binding | 1.18E-02 |
| 59 | GO:0004565: beta-galactosidase activity | 1.18E-02 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 1.38E-02 |
| 61 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.50E-02 |
| 62 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.50E-02 |
| 63 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.50E-02 |
| 64 | GO:0051536: iron-sulfur cluster binding | 1.62E-02 |
| 65 | GO:0051087: chaperone binding | 1.74E-02 |
| 66 | GO:0004707: MAP kinase activity | 1.86E-02 |
| 67 | GO:0030570: pectate lyase activity | 2.11E-02 |
| 68 | GO:0016746: transferase activity, transferring acyl groups | 2.20E-02 |
| 69 | GO:0003756: protein disulfide isomerase activity | 2.24E-02 |
| 70 | GO:0047134: protein-disulfide reductase activity | 2.37E-02 |
| 71 | GO:0004812: aminoacyl-tRNA ligase activity | 2.37E-02 |
| 72 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.64E-02 |
| 73 | GO:0016491: oxidoreductase activity | 2.73E-02 |
| 74 | GO:0004791: thioredoxin-disulfide reductase activity | 2.78E-02 |
| 75 | GO:0005355: glucose transmembrane transporter activity | 2.78E-02 |
| 76 | GO:0050662: coenzyme binding | 2.78E-02 |
| 77 | GO:0004252: serine-type endopeptidase activity | 2.97E-02 |
| 78 | GO:0051015: actin filament binding | 3.36E-02 |
| 79 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.36E-02 |
| 80 | GO:0016791: phosphatase activity | 3.52E-02 |
| 81 | GO:0008289: lipid binding | 4.34E-02 |
| 82 | GO:0005509: calcium ion binding | 4.44E-02 |
| 83 | GO:0042802: identical protein binding | 4.68E-02 |
| 84 | GO:0016887: ATPase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.90E-72 |
| 4 | GO:0009570: chloroplast stroma | 5.02E-52 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 8.16E-40 |
| 6 | GO:0009941: chloroplast envelope | 2.24E-38 |
| 7 | GO:0009579: thylakoid | 2.65E-28 |
| 8 | GO:0009534: chloroplast thylakoid | 8.33E-27 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 6.46E-25 |
| 10 | GO:0005840: ribosome | 4.52E-21 |
| 11 | GO:0031977: thylakoid lumen | 1.81E-14 |
| 12 | GO:0010007: magnesium chelatase complex | 3.21E-08 |
| 13 | GO:0030095: chloroplast photosystem II | 1.99E-06 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 5.32E-06 |
| 15 | GO:0019898: extrinsic component of membrane | 2.58E-05 |
| 16 | GO:0009523: photosystem II | 2.58E-05 |
| 17 | GO:0000311: plastid large ribosomal subunit | 4.68E-05 |
| 18 | GO:0031969: chloroplast membrane | 1.88E-04 |
| 19 | GO:0009547: plastid ribosome | 3.07E-04 |
| 20 | GO:0009515: granal stacked thylakoid | 3.07E-04 |
| 21 | GO:0016020: membrane | 3.08E-04 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.63E-04 |
| 23 | GO:0010319: stromule | 5.63E-04 |
| 24 | GO:0080085: signal recognition particle, chloroplast targeting | 6.71E-04 |
| 25 | GO:0030093: chloroplast photosystem I | 6.71E-04 |
| 26 | GO:0032040: small-subunit processome | 8.40E-04 |
| 27 | GO:0015934: large ribosomal subunit | 1.09E-03 |
| 28 | GO:0009528: plastid inner membrane | 1.09E-03 |
| 29 | GO:0032432: actin filament bundle | 1.56E-03 |
| 30 | GO:0042651: thylakoid membrane | 1.62E-03 |
| 31 | GO:0015935: small ribosomal subunit | 1.78E-03 |
| 32 | GO:0009527: plastid outer membrane | 2.09E-03 |
| 33 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.30E-03 |
| 34 | GO:0031209: SCAR complex | 3.30E-03 |
| 35 | GO:0009706: chloroplast inner membrane | 3.85E-03 |
| 36 | GO:0009533: chloroplast stromal thylakoid | 4.68E-03 |
| 37 | GO:0010287: plastoglobule | 4.78E-03 |
| 38 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 6.23E-03 |
| 39 | GO:0005763: mitochondrial small ribosomal subunit | 7.07E-03 |
| 40 | GO:0005884: actin filament | 9.79E-03 |
| 41 | GO:0009508: plastid chromosome | 1.18E-02 |
| 42 | GO:0000312: plastid small ribosomal subunit | 1.28E-02 |
| 43 | GO:0022626: cytosolic ribosome | 1.66E-02 |
| 44 | GO:0009532: plastid stroma | 1.86E-02 |
| 45 | GO:0022625: cytosolic large ribosomal subunit | 1.89E-02 |
| 46 | GO:0009522: photosystem I | 2.78E-02 |
| 47 | GO:0009295: nucleoid | 3.67E-02 |
| 48 | GO:0016021: integral component of membrane | 3.97E-02 |
| 49 | GO:0030529: intracellular ribonucleoprotein complex | 3.98E-02 |
| 50 | GO:0009707: chloroplast outer membrane | 4.81E-02 |
| 51 | GO:0046658: anchored component of plasma membrane | 4.87E-02 |