Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0006223: uracil salvage0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0032544: plastid translation3.43E-12
11GO:0009735: response to cytokinin3.16E-08
12GO:0006412: translation4.12E-08
13GO:0015995: chlorophyll biosynthetic process9.12E-08
14GO:0015979: photosynthesis1.60E-07
15GO:0010027: thylakoid membrane organization1.80E-06
16GO:0090391: granum assembly1.17E-05
17GO:0009772: photosynthetic electron transport in photosystem II1.99E-04
18GO:0010196: nonphotochemical quenching1.99E-04
19GO:0048564: photosystem I assembly2.52E-04
20GO:0043489: RNA stabilization2.65E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process2.65E-04
22GO:1904964: positive regulation of phytol biosynthetic process2.65E-04
23GO:0042371: vitamin K biosynthetic process2.65E-04
24GO:0043686: co-translational protein modification2.65E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway2.65E-04
26GO:0009657: plastid organization3.10E-04
27GO:0010206: photosystem II repair3.74E-04
28GO:0009658: chloroplast organization4.34E-04
29GO:0042254: ribosome biogenesis4.49E-04
30GO:0010541: acropetal auxin transport5.83E-04
31GO:0006729: tetrahydrobiopterin biosynthetic process5.83E-04
32GO:0006568: tryptophan metabolic process5.83E-04
33GO:0010289: homogalacturonan biosynthetic process5.83E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly5.83E-04
35GO:0043255: regulation of carbohydrate biosynthetic process5.83E-04
36GO:1902326: positive regulation of chlorophyll biosynthetic process5.83E-04
37GO:0010207: photosystem II assembly8.73E-04
38GO:0010143: cutin biosynthetic process8.73E-04
39GO:0010581: regulation of starch biosynthetic process9.47E-04
40GO:0010160: formation of animal organ boundary9.47E-04
41GO:0009062: fatty acid catabolic process9.47E-04
42GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.47E-04
43GO:0080055: low-affinity nitrate transport9.47E-04
44GO:0051604: protein maturation9.47E-04
45GO:0030865: cortical cytoskeleton organization9.47E-04
46GO:0000913: preprophase band assembly9.47E-04
47GO:0006424: glutamyl-tRNA aminoacylation1.35E-03
48GO:1901332: negative regulation of lateral root development1.35E-03
49GO:0006986: response to unfolded protein1.35E-03
50GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.35E-03
51GO:2001141: regulation of RNA biosynthetic process1.35E-03
52GO:0071484: cellular response to light intensity1.35E-03
53GO:0009102: biotin biosynthetic process1.35E-03
54GO:0051085: chaperone mediated protein folding requiring cofactor1.35E-03
55GO:0051639: actin filament network formation1.35E-03
56GO:0043481: anthocyanin accumulation in tissues in response to UV light1.35E-03
57GO:0009052: pentose-phosphate shunt, non-oxidative branch1.35E-03
58GO:0009650: UV protection1.35E-03
59GO:0031408: oxylipin biosynthetic process1.44E-03
60GO:0008152: metabolic process1.49E-03
61GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.72E-03
62GO:0044206: UMP salvage1.81E-03
63GO:0051764: actin crosslink formation1.81E-03
64GO:0006661: phosphatidylinositol biosynthetic process1.81E-03
65GO:0042335: cuticle development2.19E-03
66GO:0000413: protein peptidyl-prolyl isomerization2.19E-03
67GO:0032543: mitochondrial translation2.31E-03
68GO:0043097: pyrimidine nucleoside salvage2.31E-03
69GO:0010236: plastoquinone biosynthetic process2.31E-03
70GO:0045038: protein import into chloroplast thylakoid membrane2.31E-03
71GO:0048497: maintenance of floral organ identity2.31E-03
72GO:0031365: N-terminal protein amino acid modification2.31E-03
73GO:0006461: protein complex assembly2.31E-03
74GO:0000304: response to singlet oxygen2.31E-03
75GO:0008654: phospholipid biosynthetic process2.71E-03
76GO:0006206: pyrimidine nucleobase metabolic process2.85E-03
77GO:0010190: cytochrome b6f complex assembly2.85E-03
78GO:0010337: regulation of salicylic acid metabolic process2.85E-03
79GO:0042549: photosystem II stabilization2.85E-03
80GO:0000470: maturation of LSU-rRNA2.85E-03
81GO:0009913: epidermal cell differentiation2.85E-03
82GO:0006655: phosphatidylglycerol biosynthetic process2.85E-03
83GO:0060918: auxin transport2.85E-03
84GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.43E-03
85GO:0030488: tRNA methylation3.43E-03
86GO:0010019: chloroplast-nucleus signaling pathway3.43E-03
87GO:0042372: phylloquinone biosynthetic process3.43E-03
88GO:0009828: plant-type cell wall loosening3.51E-03
89GO:1900057: positive regulation of leaf senescence4.04E-03
90GO:0006400: tRNA modification4.04E-03
91GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.04E-03
92GO:0042744: hydrogen peroxide catabolic process4.60E-03
93GO:0045292: mRNA cis splicing, via spliceosome4.69E-03
94GO:0008610: lipid biosynthetic process4.69E-03
95GO:0006633: fatty acid biosynthetic process5.22E-03
96GO:0071482: cellular response to light stimulus5.37E-03
97GO:0019430: removal of superoxide radicals5.37E-03
98GO:0006457: protein folding5.43E-03
99GO:0009817: defense response to fungus, incompatible interaction5.46E-03
100GO:0000373: Group II intron splicing6.09E-03
101GO:0009631: cold acclimation6.32E-03
102GO:0009409: response to cold6.56E-03
103GO:0010380: regulation of chlorophyll biosynthetic process6.83E-03
104GO:0006779: porphyrin-containing compound biosynthetic process6.83E-03
105GO:0042761: very long-chain fatty acid biosynthetic process6.83E-03
106GO:0009637: response to blue light6.93E-03
107GO:0006782: protoporphyrinogen IX biosynthetic process7.61E-03
108GO:0006535: cysteine biosynthetic process from serine7.61E-03
109GO:0006032: chitin catabolic process7.61E-03
110GO:0045036: protein targeting to chloroplast7.61E-03
111GO:0006949: syncytium formation7.61E-03
112GO:0009299: mRNA transcription7.61E-03
113GO:0009073: aromatic amino acid family biosynthetic process8.42E-03
114GO:0043085: positive regulation of catalytic activity8.42E-03
115GO:0006352: DNA-templated transcription, initiation8.42E-03
116GO:0018119: peptidyl-cysteine S-nitrosylation8.42E-03
117GO:0009773: photosynthetic electron transport in photosystem I8.42E-03
118GO:0010114: response to red light8.94E-03
119GO:0016024: CDP-diacylglycerol biosynthetic process9.26E-03
120GO:0008361: regulation of cell size9.26E-03
121GO:0009718: anthocyanin-containing compound biosynthetic process1.01E-02
122GO:0010540: basipetal auxin transport1.10E-02
123GO:0009664: plant-type cell wall organization1.12E-02
124GO:0010053: root epidermal cell differentiation1.20E-02
125GO:0009825: multidimensional cell growth1.20E-02
126GO:0010167: response to nitrate1.20E-02
127GO:0009809: lignin biosynthetic process1.21E-02
128GO:0010025: wax biosynthetic process1.29E-02
129GO:0006833: water transport1.29E-02
130GO:0051017: actin filament bundle assembly1.39E-02
131GO:0019344: cysteine biosynthetic process1.39E-02
132GO:0009116: nucleoside metabolic process1.39E-02
133GO:0000027: ribosomal large subunit assembly1.39E-02
134GO:0007017: microtubule-based process1.49E-02
135GO:0009695: jasmonic acid biosynthetic process1.49E-02
136GO:0006418: tRNA aminoacylation for protein translation1.49E-02
137GO:0016998: cell wall macromolecule catabolic process1.59E-02
138GO:0030245: cellulose catabolic process1.70E-02
139GO:0009411: response to UV1.81E-02
140GO:0071369: cellular response to ethylene stimulus1.81E-02
141GO:0055085: transmembrane transport1.84E-02
142GO:0006869: lipid transport1.91E-02
143GO:0048443: stamen development1.92E-02
144GO:0016117: carotenoid biosynthetic process2.03E-02
145GO:0080022: primary root development2.15E-02
146GO:0034220: ion transmembrane transport2.15E-02
147GO:0000226: microtubule cytoskeleton organization2.15E-02
148GO:0009958: positive gravitropism2.26E-02
149GO:0015986: ATP synthesis coupled proton transport2.38E-02
150GO:0048825: cotyledon development2.51E-02
151GO:0009790: embryo development2.52E-02
152GO:0000302: response to reactive oxygen species2.63E-02
153GO:0006635: fatty acid beta-oxidation2.63E-02
154GO:0032502: developmental process2.76E-02
155GO:0030163: protein catabolic process2.88E-02
156GO:0009639: response to red or far red light3.02E-02
157GO:0009567: double fertilization forming a zygote and endosperm3.02E-02
158GO:0009451: RNA modification3.05E-02
159GO:0009734: auxin-activated signaling pathway3.38E-02
160GO:0030244: cellulose biosynthetic process4.13E-02
161GO:0018298: protein-chromophore linkage4.13E-02
162GO:0048481: plant ovule development4.13E-02
163GO:0010311: lateral root formation4.28E-02
164GO:0010218: response to far red light4.43E-02
165GO:0009826: unidimensional cell growth4.43E-02
166GO:0009416: response to light stimulus4.49E-02
167GO:0048527: lateral root development4.58E-02
168GO:0045087: innate immune response4.88E-02
169GO:0016051: carbohydrate biosynthetic process4.88E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
5GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
6GO:0005048: signal sequence binding0.00E+00
7GO:0004076: biotin synthase activity0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
10GO:0019843: rRNA binding4.33E-14
11GO:0003735: structural constituent of ribosome1.86E-08
12GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.24E-06
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.87E-05
14GO:0005528: FK506 binding8.41E-05
15GO:0051087: chaperone binding9.78E-05
16GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.10E-04
17GO:0005525: GTP binding1.71E-04
18GO:0004321: fatty-acyl-CoA synthase activity2.65E-04
19GO:0042586: peptide deformylase activity2.65E-04
20GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.65E-04
21GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.65E-04
22GO:0008809: carnitine racemase activity2.65E-04
23GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.65E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.65E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.65E-04
26GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity2.65E-04
27GO:0017169: CDP-alcohol phosphatidyltransferase activity2.65E-04
28GO:0000774: adenyl-nucleotide exchange factor activity5.83E-04
29GO:0016630: protochlorophyllide reductase activity5.83E-04
30GO:0008266: poly(U) RNA binding8.73E-04
31GO:0002161: aminoacyl-tRNA editing activity9.47E-04
32GO:0004751: ribose-5-phosphate isomerase activity9.47E-04
33GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity9.47E-04
34GO:0080054: low-affinity nitrate transmembrane transporter activity9.47E-04
35GO:0016851: magnesium chelatase activity1.35E-03
36GO:0043023: ribosomal large subunit binding1.35E-03
37GO:0004165: dodecenoyl-CoA delta-isomerase activity1.35E-03
38GO:0001872: (1->3)-beta-D-glucan binding1.35E-03
39GO:0043495: protein anchor1.81E-03
40GO:0004659: prenyltransferase activity1.81E-03
41GO:0001053: plastid sigma factor activity1.81E-03
42GO:0004845: uracil phosphoribosyltransferase activity1.81E-03
43GO:0016836: hydro-lyase activity1.81E-03
44GO:0004045: aminoacyl-tRNA hydrolase activity1.81E-03
45GO:0016987: sigma factor activity1.81E-03
46GO:0003959: NADPH dehydrogenase activity2.31E-03
47GO:0004130: cytochrome-c peroxidase activity2.85E-03
48GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.85E-03
49GO:0016688: L-ascorbate peroxidase activity2.85E-03
50GO:0004849: uridine kinase activity3.43E-03
51GO:0004124: cysteine synthase activity3.43E-03
52GO:0016791: phosphatase activity3.51E-03
53GO:0019899: enzyme binding4.04E-03
54GO:0004620: phospholipase activity4.04E-03
55GO:0052747: sinapyl alcohol dehydrogenase activity4.69E-03
56GO:0004033: aldo-keto reductase (NADP) activity4.69E-03
57GO:0004714: transmembrane receptor protein tyrosine kinase activity4.69E-03
58GO:0008312: 7S RNA binding4.69E-03
59GO:0030247: polysaccharide binding4.93E-03
60GO:0008236: serine-type peptidase activity5.20E-03
61GO:0003924: GTPase activity5.39E-03
62GO:0016207: 4-coumarate-CoA ligase activity6.09E-03
63GO:0004568: chitinase activity7.61E-03
64GO:0008047: enzyme activator activity7.61E-03
65GO:0051539: 4 iron, 4 sulfur cluster binding7.90E-03
66GO:0042802: identical protein binding7.98E-03
67GO:0008289: lipid binding8.91E-03
68GO:0000049: tRNA binding9.26E-03
69GO:0045551: cinnamyl-alcohol dehydrogenase activity9.26E-03
70GO:0008378: galactosyltransferase activity9.26E-03
71GO:0010329: auxin efflux transmembrane transporter activity1.01E-02
72GO:0004565: beta-galactosidase activity1.01E-02
73GO:0005509: calcium ion binding1.03E-02
74GO:0016788: hydrolase activity, acting on ester bonds1.05E-02
75GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.10E-02
76GO:0051536: iron-sulfur cluster binding1.39E-02
77GO:0043424: protein histidine kinase binding1.49E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.70E-02
79GO:0051082: unfolded protein binding1.72E-02
80GO:0016740: transferase activity1.74E-02
81GO:0016746: transferase activity, transferring acyl groups1.78E-02
82GO:0042803: protein homodimerization activity1.80E-02
83GO:0030570: pectate lyase activity1.81E-02
84GO:0008810: cellulase activity1.81E-02
85GO:0022891: substrate-specific transmembrane transporter activity1.81E-02
86GO:0004812: aminoacyl-tRNA ligase activity2.03E-02
87GO:0005507: copper ion binding2.18E-02
88GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.26E-02
89GO:0004791: thioredoxin-disulfide reductase activity2.38E-02
90GO:0030170: pyridoxal phosphate binding2.40E-02
91GO:0004252: serine-type endopeptidase activity2.40E-02
92GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.88E-02
93GO:0051015: actin filament binding2.88E-02
94GO:0005200: structural constituent of cytoskeleton3.15E-02
95GO:0008483: transaminase activity3.15E-02
96GO:0015250: water channel activity3.42E-02
97GO:0016168: chlorophyll binding3.56E-02
98GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.78E-02
99GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.13E-02
100GO:0016787: hydrolase activity4.27E-02
101GO:0030145: manganese ion binding4.58E-02
102GO:0004601: peroxidase activity4.60E-02
103GO:0003746: translation elongation factor activity4.88E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast3.44E-52
3GO:0009570: chloroplast stroma2.27E-41
4GO:0009941: chloroplast envelope7.67E-33
5GO:0009579: thylakoid1.31E-29
6GO:0009535: chloroplast thylakoid membrane2.44E-24
7GO:0009534: chloroplast thylakoid1.38E-19
8GO:0009543: chloroplast thylakoid lumen2.96E-17
9GO:0031977: thylakoid lumen5.47E-15
10GO:0005840: ribosome2.78E-09
11GO:0009654: photosystem II oxygen evolving complex6.58E-08
12GO:0019898: extrinsic component of membrane5.39E-07
13GO:0030095: chloroplast photosystem II1.24E-06
14GO:0009533: chloroplast stromal thylakoid3.81E-06
15GO:0009547: plastid ribosome2.65E-04
16GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.65E-04
17GO:0080085: signal recognition particle, chloroplast targeting5.83E-04
18GO:0030981: cortical microtubule cytoskeleton5.83E-04
19GO:0031969: chloroplast membrane6.39E-04
20GO:0016020: membrane8.11E-04
21GO:0000312: plastid small ribosomal subunit8.73E-04
22GO:0009509: chromoplast9.47E-04
23GO:0010007: magnesium chelatase complex9.47E-04
24GO:0015630: microtubule cytoskeleton1.35E-03
25GO:0032432: actin filament bundle1.35E-03
26GO:0009536: plastid1.67E-03
27GO:0046658: anchored component of plasma membrane1.69E-03
28GO:0009526: plastid envelope1.81E-03
29GO:0031225: anchored component of membrane2.16E-03
30GO:0055035: plastid thylakoid membrane2.31E-03
31GO:0009523: photosystem II2.71E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.85E-03
33GO:0005618: cell wall3.12E-03
34GO:0030529: intracellular ribonucleoprotein complex4.19E-03
35GO:0005759: mitochondrial matrix5.22E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.37E-03
37GO:0008180: COP9 signalosome6.09E-03
38GO:0055028: cortical microtubule7.61E-03
39GO:0005884: actin filament8.42E-03
40GO:0000311: plastid large ribosomal subunit9.26E-03
41GO:0043234: protein complex1.29E-02
42GO:0022625: cytosolic large ribosomal subunit1.44E-02
43GO:0042651: thylakoid membrane1.49E-02
44GO:0015935: small ribosomal subunit1.59E-02
45GO:0010287: plastoglobule2.05E-02
46GO:0010319: stromule3.15E-02
47GO:0022627: cytosolic small ribosomal subunit3.94E-02
48GO:0019005: SCF ubiquitin ligase complex4.13E-02
49GO:0009707: chloroplast outer membrane4.13E-02
50GO:0022626: cytosolic ribosome4.26E-02
51GO:0015934: large ribosomal subunit4.58E-02
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Gene type



Gene DE type