co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.37E-05
3	GO:0010155: regulation of proton transport	8.48E-05
4	GO:0010498: proteasomal protein catabolic process	1.47E-04
5	GO:0080055: low-affinity nitrate transport	1.47E-04
6	GO:0042780: tRNA 3'-end processing	1.47E-04
7	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.47E-04
8	GO:0072583: clathrin-dependent endocytosis	2.18E-04
9	GO:0033320: UDP-D-xylose biosynthetic process	2.95E-04
10	GO:0098719: sodium ion import across plasma membrane	3.77E-04
11	GO:0005513: detection of calcium ion	3.77E-04
12	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.77E-04
13	GO:0042732: D-xylose metabolic process	4.63E-04
14	GO:0009612: response to mechanical stimulus	5.53E-04
15	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.53E-04
16	GO:0043090: amino acid import	6.47E-04
17	GO:0000028: ribosomal small subunit assembly	7.44E-04
18	GO:0006002: fructose 6-phosphate metabolic process	8.45E-04
19	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	8.45E-04
20	GO:0009821: alkaloid biosynthetic process	9.49E-04
21	GO:0009620: response to fungus	1.01E-03
22	GO:0051453: regulation of intracellular pH	1.06E-03
23	GO:0010629: negative regulation of gene expression	1.17E-03
24	GO:0010582: floral meristem determinacy	1.40E-03
25	GO:0015706: nitrate transport	1.40E-03
26	GO:0010102: lateral root morphogenesis	1.52E-03
27	GO:0055046: microgametogenesis	1.52E-03
28	GO:0010053: root epidermal cell differentiation	1.78E-03
29	GO:0009225: nucleotide-sugar metabolic process	1.78E-03
30	GO:0031348: negative regulation of defense response	2.48E-03
31	GO:0010227: floral organ abscission	2.63E-03
32	GO:0009561: megagametogenesis	2.78E-03
33	GO:0042391: regulation of membrane potential	3.09E-03
34	GO:0008360: regulation of cell shape	3.25E-03
35	GO:0048544: recognition of pollen	3.42E-03
36	GO:0006814: sodium ion transport	3.42E-03
37	GO:0000302: response to reactive oxygen species	3.76E-03
38	GO:0071805: potassium ion transmembrane transport	4.46E-03
39	GO:0009615: response to virus	4.83E-03
40	GO:0009607: response to biotic stimulus	5.02E-03
41	GO:0009751: response to salicylic acid	5.11E-03
42	GO:0042128: nitrate assimilation	5.21E-03
43	GO:0009817: defense response to fungus, incompatible interaction	5.79E-03
44	GO:0008219: cell death	5.79E-03
45	GO:0006865: amino acid transport	6.61E-03
46	GO:0000209: protein polyubiquitination	8.37E-03
47	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.30E-03
48	GO:0031347: regulation of defense response	9.30E-03
49	GO:0006364: rRNA processing	1.00E-02
50	GO:0006857: oligopeptide transport	1.05E-02
51	GO:0006096: glycolytic process	1.13E-02
52	GO:0009553: embryo sac development	1.26E-02
53	GO:0009624: response to nematode	1.28E-02
54	GO:0006396: RNA processing	1.31E-02
55	GO:0051726: regulation of cell cycle	1.34E-02
56	GO:0009058: biosynthetic process	1.56E-02
57	GO:0071555: cell wall organization	1.87E-02
58	GO:0010150: leaf senescence	1.89E-02
59	GO:0045490: pectin catabolic process	1.89E-02
60	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.05E-02
61	GO:0006470: protein dephosphorylation	2.08E-02
62	GO:0010468: regulation of gene expression	2.15E-02
63	GO:0042254: ribosome biogenesis	2.62E-02
64	GO:0009723: response to ethylene	2.87E-02
65	GO:0080167: response to karrikin	3.01E-02
66	GO:0010200: response to chitin	3.08E-02
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.08E-02
68	GO:0046777: protein autophosphorylation	3.16E-02
69	GO:0009753: response to jasmonic acid	4.18E-02
70	GO:0006468: protein phosphorylation	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0032050: clathrin heavy chain binding	3.37E-05
4	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	8.48E-05
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.47E-04
6	GO:0004557: alpha-galactosidase activity	1.47E-04
7	GO:0052692: raffinose alpha-galactosidase activity	1.47E-04
8	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.47E-04
9	GO:0070628: proteasome binding	2.95E-04
10	GO:0048040: UDP-glucuronate decarboxylase activity	4.63E-04
11	GO:0070403: NAD+ binding	5.53E-04
12	GO:0003872: 6-phosphofructokinase activity	6.47E-04
13	GO:0030515: snoRNA binding	6.47E-04
14	GO:0005198: structural molecule activity	6.61E-04
15	GO:0015293: symporter activity	6.61E-04
16	GO:0004714: transmembrane receptor protein tyrosine kinase activity	7.44E-04
17	GO:0003843: 1,3-beta-D-glucan synthase activity	8.45E-04
18	GO:0016844: strictosidine synthase activity	1.06E-03
19	GO:0004713: protein tyrosine kinase activity	1.17E-03
20	GO:0015386: potassium:proton antiporter activity	1.28E-03
21	GO:0001054: RNA polymerase I activity	1.28E-03
22	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.52E-03
23	GO:0030552: cAMP binding	1.78E-03
24	GO:0030553: cGMP binding	1.78E-03
25	GO:0051536: iron-sulfur cluster binding	2.05E-03
26	GO:0003954: NADH dehydrogenase activity	2.05E-03
27	GO:0005216: ion channel activity	2.19E-03
28	GO:0005249: voltage-gated potassium channel activity	3.09E-03
29	GO:0030551: cyclic nucleotide binding	3.09E-03
30	GO:0015385: sodium:proton antiporter activity	4.10E-03
31	GO:0004004: ATP-dependent RNA helicase activity	5.40E-03
32	GO:0004712: protein serine/threonine/tyrosine kinase activity	7.25E-03
33	GO:0000166: nucleotide binding	9.19E-03
34	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.00E-02
35	GO:0015171: amino acid transmembrane transporter activity	1.08E-02
36	GO:0005524: ATP binding	1.22E-02
37	GO:0030246: carbohydrate binding	1.24E-02
38	GO:0004386: helicase activity	1.37E-02
39	GO:0005516: calmodulin binding	1.39E-02
40	GO:0019843: rRNA binding	1.51E-02
41	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
42	GO:0003824: catalytic activity	2.05E-02
43	GO:0000287: magnesium ion binding	2.55E-02
44	GO:0016788: hydrolase activity, acting on ester bonds	2.62E-02
45	GO:0004672: protein kinase activity	2.75E-02
46	GO:0003729: mRNA binding	2.78E-02
47	GO:0004497: monooxygenase activity	3.01E-02
48	GO:0061630: ubiquitin protein ligase activity	3.12E-02
49	GO:0042803: protein homodimerization activity	3.54E-02
50	GO:0004722: protein serine/threonine phosphatase activity	3.66E-02
51	GO:0003735: structural constituent of ribosome	3.71E-02
52	GO:0046872: metal ion binding	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	3.37E-05
2	GO:0031304: intrinsic component of mitochondrial inner membrane	8.48E-05
3	GO:0005945: 6-phosphofructokinase complex	3.77E-04
4	GO:0005886: plasma membrane	6.26E-04
5	GO:0000148: 1,3-beta-D-glucan synthase complex	8.45E-04
6	GO:0005736: DNA-directed RNA polymerase I complex	9.49E-04
7	GO:0030125: clathrin vesicle coat	1.17E-03
8	GO:0032040: small-subunit processome	1.40E-03
9	GO:0005839: proteasome core complex	2.33E-03
10	GO:0005783: endoplasmic reticulum	2.52E-03
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.12E-03
12	GO:0009504: cell plate	3.59E-03
13	GO:0032580: Golgi cisterna membrane	4.28E-03
14	GO:0009506: plasmodesma	7.71E-03
15	GO:0010008: endosome membrane	1.15E-02
16	GO:0005840: ribosome	1.96E-02
17	GO:0022625: cytosolic large ribosomal subunit	3.12E-02
18	GO:0016021: integral component of membrane	4.34E-02
19	GO:0005887: integral component of plasma membrane	4.94E-02