co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0034337: RNA folding	0.00E+00
4	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:0045176: apical protein localization	0.00E+00
10	GO:0061635: regulation of protein complex stability	0.00E+00
11	GO:0016553: base conversion or substitution editing	0.00E+00
12	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
13	GO:0090042: tubulin deacetylation	0.00E+00
14	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
15	GO:0015979: photosynthesis	3.00E-15
16	GO:0009773: photosynthetic electron transport in photosystem I	1.44E-12
17	GO:0032544: plastid translation	2.08E-09
18	GO:0010027: thylakoid membrane organization	5.63E-09
19	GO:0015995: chlorophyll biosynthetic process	1.05E-08
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.51E-06
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.51E-06
22	GO:0009735: response to cytokinin	1.76E-05
23	GO:0006000: fructose metabolic process	1.94E-05
24	GO:0015994: chlorophyll metabolic process	7.62E-05
25	GO:0032543: mitochondrial translation	1.19E-04
26	GO:0018298: protein-chromophore linkage	1.42E-04
27	GO:0042254: ribosome biogenesis	1.88E-04
28	GO:0010196: nonphotochemical quenching	3.02E-04
29	GO:0000481: maturation of 5S rRNA	3.50E-04
30	GO:0042371: vitamin K biosynthetic process	3.50E-04
31	GO:0065002: intracellular protein transmembrane transport	3.50E-04
32	GO:0010028: xanthophyll cycle	3.50E-04
33	GO:0071588: hydrogen peroxide mediated signaling pathway	3.50E-04
34	GO:0043953: protein transport by the Tat complex	3.50E-04
35	GO:0043489: RNA stabilization	3.50E-04
36	GO:0008610: lipid biosynthetic process	3.80E-04
37	GO:0006002: fructose 6-phosphate metabolic process	4.65E-04
38	GO:0071482: cellular response to light stimulus	4.65E-04
39	GO:0009657: plastid organization	4.65E-04
40	GO:1900865: chloroplast RNA modification	6.60E-04
41	GO:0016122: xanthophyll metabolic process	7.62E-04
42	GO:0010270: photosystem II oxygen evolving complex assembly	7.62E-04
43	GO:0080005: photosystem stoichiometry adjustment	7.62E-04
44	GO:0034755: iron ion transmembrane transport	7.62E-04
45	GO:0043085: positive regulation of catalytic activity	8.86E-04
46	GO:0009658: chloroplast organization	8.98E-04
47	GO:0005983: starch catabolic process	1.01E-03
48	GO:0006094: gluconeogenesis	1.14E-03
49	GO:0005986: sucrose biosynthetic process	1.14E-03
50	GO:0006006: glucose metabolic process	1.14E-03
51	GO:1902448: positive regulation of shade avoidance	1.23E-03
52	GO:0090391: granum assembly	1.23E-03
53	GO:0006518: peptide metabolic process	1.23E-03
54	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.23E-03
55	GO:0051604: protein maturation	1.23E-03
56	GO:0019253: reductive pentose-phosphate cycle	1.29E-03
57	GO:0006412: translation	1.31E-03
58	GO:0034599: cellular response to oxidative stress	1.65E-03
59	GO:2001141: regulation of RNA biosynthetic process	1.78E-03
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.78E-03
61	GO:0051639: actin filament network formation	1.78E-03
62	GO:0009152: purine ribonucleotide biosynthetic process	1.78E-03
63	GO:0046653: tetrahydrofolate metabolic process	1.78E-03
64	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.78E-03
65	GO:0006424: glutamyl-tRNA aminoacylation	1.78E-03
66	GO:1901332: negative regulation of lateral root development	1.78E-03
67	GO:0009768: photosynthesis, light harvesting in photosystem I	1.96E-03
68	GO:0009416: response to light stimulus	2.03E-03
69	GO:0061077: chaperone-mediated protein folding	2.16E-03
70	GO:0010021: amylopectin biosynthetic process	2.38E-03
71	GO:0051764: actin crosslink formation	2.38E-03
72	GO:0009765: photosynthesis, light harvesting	2.38E-03
73	GO:0006109: regulation of carbohydrate metabolic process	2.38E-03
74	GO:0045727: positive regulation of translation	2.38E-03
75	GO:0009306: protein secretion	2.80E-03
76	GO:0045038: protein import into chloroplast thylakoid membrane	3.05E-03
77	GO:0006461: protein complex assembly	3.05E-03
78	GO:0006564: L-serine biosynthetic process	3.05E-03
79	GO:0010236: plastoquinone biosynthetic process	3.05E-03
80	GO:0042335: cuticle development	3.27E-03
81	GO:0006662: glycerol ether metabolic process	3.53E-03
82	GO:0048827: phyllome development	3.76E-03
83	GO:0042549: photosystem II stabilization	3.76E-03
84	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.76E-03
85	GO:0016554: cytidine to uridine editing	3.76E-03
86	GO:0009913: epidermal cell differentiation	3.76E-03
87	GO:0006655: phosphatidylglycerol biosynthetic process	3.76E-03
88	GO:0006828: manganese ion transport	3.76E-03
89	GO:0010190: cytochrome b6f complex assembly	3.76E-03
90	GO:0032973: amino acid export	3.76E-03
91	GO:0019252: starch biosynthetic process	4.07E-03
92	GO:0030488: tRNA methylation	4.54E-03
93	GO:0010019: chloroplast-nucleus signaling pathway	4.54E-03
94	GO:0042372: phylloquinone biosynthetic process	4.54E-03
95	GO:1901259: chloroplast rRNA processing	4.54E-03
96	GO:0009772: photosynthetic electron transport in photosystem II	5.36E-03
97	GO:0043090: amino acid import	5.36E-03
98	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.36E-03
99	GO:0009645: response to low light intensity stimulus	5.36E-03
100	GO:0006400: tRNA modification	5.36E-03
101	GO:0009642: response to light intensity	6.22E-03
102	GO:0006605: protein targeting	6.22E-03
103	GO:0032508: DNA duplex unwinding	6.22E-03
104	GO:0017004: cytochrome complex assembly	7.14E-03
105	GO:0009051: pentose-phosphate shunt, oxidative branch	8.10E-03
106	GO:0010206: photosystem II repair	8.10E-03
107	GO:0080144: amino acid homeostasis	8.10E-03
108	GO:0010205: photoinhibition	9.10E-03
109	GO:0006779: porphyrin-containing compound biosynthetic process	9.10E-03
110	GO:0009631: cold acclimation	9.53E-03
111	GO:0006782: protoporphyrinogen IX biosynthetic process	1.01E-02
112	GO:0009451: RNA modification	1.02E-02
113	GO:0009637: response to blue light	1.05E-02
114	GO:0009750: response to fructose	1.12E-02
115	GO:0000038: very long-chain fatty acid metabolic process	1.12E-02
116	GO:0006816: calcium ion transport	1.12E-02
117	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
118	GO:0006415: translational termination	1.12E-02
119	GO:0006879: cellular iron ion homeostasis	1.12E-02
120	GO:0006352: DNA-templated transcription, initiation	1.12E-02
121	GO:0008152: metabolic process	1.17E-02
122	GO:0016024: CDP-diacylglycerol biosynthetic process	1.24E-02
123	GO:0055114: oxidation-reduction process	1.25E-02
124	GO:0010114: response to red light	1.35E-02
125	GO:0010229: inflorescence development	1.35E-02
126	GO:0009718: anthocyanin-containing compound biosynthetic process	1.35E-02
127	GO:0010628: positive regulation of gene expression	1.35E-02
128	GO:0009409: response to cold	1.46E-02
129	GO:0010540: basipetal auxin transport	1.48E-02
130	GO:0010207: photosystem II assembly	1.48E-02
131	GO:0006855: drug transmembrane transport	1.58E-02
132	GO:0005985: sucrose metabolic process	1.60E-02
133	GO:0071732: cellular response to nitric oxide	1.60E-02
134	GO:0006810: transport	1.71E-02
135	GO:0010025: wax biosynthetic process	1.73E-02
136	GO:0006636: unsaturated fatty acid biosynthetic process	1.73E-02
137	GO:0006364: rRNA processing	1.83E-02
138	GO:0000027: ribosomal large subunit assembly	1.86E-02
139	GO:0051017: actin filament bundle assembly	1.86E-02
140	GO:0016575: histone deacetylation	2.00E-02
141	GO:0006418: tRNA aminoacylation for protein translation	2.00E-02
142	GO:0016114: terpenoid biosynthetic process	2.13E-02
143	GO:0016226: iron-sulfur cluster assembly	2.28E-02
144	GO:0035428: hexose transmembrane transport	2.28E-02
145	GO:0071369: cellular response to ethylene stimulus	2.42E-02
146	GO:0045454: cell redox homeostasis	2.84E-02
147	GO:0046323: glucose import	3.04E-02
148	GO:0006869: lipid transport	3.19E-02
149	GO:0048825: cotyledon development	3.36E-02
150	GO:0055085: transmembrane transport	3.38E-02
151	GO:0080156: mitochondrial mRNA modification	3.53E-02
152	GO:0000302: response to reactive oxygen species	3.53E-02
153	GO:0016032: viral process	3.70E-02
154	GO:0042744: hydrogen peroxide catabolic process	3.71E-02
155	GO:0030163: protein catabolic process	3.87E-02
156	GO:0071281: cellular response to iron ion	3.87E-02
157	GO:0009793: embryo development ending in seed dormancy	3.98E-02
158	GO:0009567: double fertilization forming a zygote and endosperm	4.04E-02
159	GO:0006633: fatty acid biosynthetic process	4.08E-02
160	GO:0071805: potassium ion transmembrane transport	4.22E-02
161	GO:0009911: positive regulation of flower development	4.58E-02
162	GO:0005975: carbohydrate metabolic process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0010303: limit dextrinase activity	0.00E+00
8	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
9	GO:0051721: protein phosphatase 2A binding	0.00E+00
10	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
11	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
12	GO:0042903: tubulin deacetylase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0051060: pullulanase activity	0.00E+00
15	GO:0043014: alpha-tubulin binding	0.00E+00
16	GO:0004823: leucine-tRNA ligase activity	0.00E+00
17	GO:0019843: rRNA binding	3.28E-10
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.51E-06
19	GO:0005528: FK506 binding	6.44E-06
20	GO:0016851: magnesium chelatase activity	4.29E-05
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-05
22	GO:0043495: protein anchor	7.62E-05
23	GO:0016168: chlorophyll binding	9.72E-05
24	GO:0019899: enzyme binding	3.02E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.50E-04
26	GO:0004856: xylulokinase activity	3.50E-04
27	GO:0003867: 4-aminobutyrate transaminase activity	3.50E-04
28	GO:0045485: omega-6 fatty acid desaturase activity	3.50E-04
29	GO:0004033: aldo-keto reductase (NADP) activity	3.80E-04
30	GO:0003735: structural constituent of ribosome	5.40E-04
31	GO:0047746: chlorophyllase activity	7.62E-04
32	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.62E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	7.62E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	7.62E-04
35	GO:0016630: protochlorophyllide reductase activity	7.62E-04
36	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.62E-04
37	GO:0008047: enzyme activator activity	7.69E-04
38	GO:0004565: beta-galactosidase activity	1.14E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.23E-03
40	GO:0008864: formyltetrahydrofolate deformylase activity	1.23E-03
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.23E-03
42	GO:0004373: glycogen (starch) synthase activity	1.23E-03
43	GO:0002161: aminoacyl-tRNA editing activity	1.23E-03
44	GO:0004751: ribose-5-phosphate isomerase activity	1.23E-03
45	GO:0008266: poly(U) RNA binding	1.29E-03
46	GO:0031409: pigment binding	1.60E-03
47	GO:0043023: ribosomal large subunit binding	1.78E-03
48	GO:0051536: iron-sulfur cluster binding	1.78E-03
49	GO:0048487: beta-tubulin binding	1.78E-03
50	GO:0016149: translation release factor activity, codon specific	1.78E-03
51	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.78E-03
52	GO:0015079: potassium ion transmembrane transporter activity	1.96E-03
53	GO:0003729: mRNA binding	2.16E-03
54	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.38E-03
55	GO:0004659: prenyltransferase activity	2.38E-03
56	GO:0001053: plastid sigma factor activity	2.38E-03
57	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.38E-03
58	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.38E-03
59	GO:0016987: sigma factor activity	2.38E-03
60	GO:0009011: starch synthase activity	2.38E-03
61	GO:0022891: substrate-specific transmembrane transporter activity	2.57E-03
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.97E-03
63	GO:0047134: protein-disulfide reductase activity	3.03E-03
64	GO:0003959: NADPH dehydrogenase activity	3.05E-03
65	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.05E-03
66	GO:0004130: cytochrome-c peroxidase activity	3.76E-03
67	GO:0004556: alpha-amylase activity	3.76E-03
68	GO:0016688: L-ascorbate peroxidase activity	3.76E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	3.79E-03
70	GO:0003723: RNA binding	4.57E-03
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.96E-03
72	GO:0004620: phospholipase activity	5.36E-03
73	GO:0008312: 7S RNA binding	6.22E-03
74	GO:0052747: sinapyl alcohol dehydrogenase activity	6.22E-03
75	GO:0043022: ribosome binding	6.22E-03
76	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.14E-03
77	GO:0008236: serine-type peptidase activity	7.82E-03
78	GO:0003747: translation release factor activity	8.10E-03
79	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	8.10E-03
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.23E-03
81	GO:0004222: metalloendopeptidase activity	9.09E-03
82	GO:0005381: iron ion transmembrane transporter activity	9.10E-03
83	GO:0005384: manganese ion transmembrane transporter activity	9.10E-03
84	GO:0015386: potassium:proton antiporter activity	1.12E-02
85	GO:0050661: NADP binding	1.19E-02
86	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.24E-02
87	GO:0015095: magnesium ion transmembrane transporter activity	1.35E-02
88	GO:0009982: pseudouridine synthase activity	1.35E-02
89	GO:0004022: alcohol dehydrogenase (NAD) activity	1.35E-02
90	GO:0016787: hydrolase activity	1.36E-02
91	GO:0051287: NAD binding	1.64E-02
92	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.73E-02
93	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.73E-02
94	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.73E-02
95	GO:0016788: hydrolase activity, acting on ester bonds	1.77E-02
96	GO:0004857: enzyme inhibitor activity	1.86E-02
97	GO:0004407: histone deacetylase activity	1.86E-02
98	GO:0005509: calcium ion binding	2.09E-02
99	GO:0004176: ATP-dependent peptidase activity	2.13E-02
100	GO:0015035: protein disulfide oxidoreductase activity	2.68E-02
101	GO:0016746: transferase activity, transferring acyl groups	2.68E-02
102	GO:0004812: aminoacyl-tRNA ligase activity	2.72E-02
103	GO:0004871: signal transducer activity	3.01E-02
104	GO:0005355: glucose transmembrane transporter activity	3.20E-02
105	GO:0050662: coenzyme binding	3.20E-02
106	GO:0048038: quinone binding	3.53E-02
107	GO:0004518: nuclease activity	3.70E-02
108	GO:0016491: oxidoreductase activity	3.78E-02
109	GO:0051015: actin filament binding	3.87E-02
110	GO:0004519: endonuclease activity	4.08E-02
111	GO:0008237: metallopeptidase activity	4.22E-02
112	GO:0016597: amino acid binding	4.40E-02
113	GO:0005525: GTP binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	3.44E-81
4	GO:0009570: chloroplast stroma	1.14E-41
5	GO:0009535: chloroplast thylakoid membrane	1.12E-40
6	GO:0009941: chloroplast envelope	1.52E-31
7	GO:0009534: chloroplast thylakoid	1.25E-21
8	GO:0009579: thylakoid	8.05E-18
9	GO:0009543: chloroplast thylakoid lumen	5.16E-16
10	GO:0031977: thylakoid lumen	2.20E-12
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.81E-09
12	GO:0005840: ribosome	3.75E-08
13	GO:0009654: photosystem II oxygen evolving complex	1.99E-07
14	GO:0031969: chloroplast membrane	5.24E-07
15	GO:0019898: extrinsic component of membrane	1.59E-06
16	GO:0042651: thylakoid membrane	8.04E-06
17	GO:0010007: magnesium chelatase complex	1.94E-05
18	GO:0010287: plastoglobule	2.01E-04
19	GO:0009533: chloroplast stromal thylakoid	3.02E-04
20	GO:0031361: integral component of thylakoid membrane	3.50E-04
21	GO:0009782: photosystem I antenna complex	3.50E-04
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.50E-04
23	GO:0009515: granal stacked thylakoid	3.50E-04
24	GO:0009523: photosystem II	4.76E-04
25	GO:0080085: signal recognition particle, chloroplast targeting	7.62E-04
26	GO:0009706: chloroplast inner membrane	8.99E-04
27	GO:0032040: small-subunit processome	1.01E-03
28	GO:0048046: apoplast	1.12E-03
29	GO:0033281: TAT protein transport complex	1.23E-03
30	GO:0030095: chloroplast photosystem II	1.29E-03
31	GO:0030076: light-harvesting complex	1.44E-03
32	GO:0016020: membrane	1.67E-03
33	GO:0016021: integral component of membrane	1.75E-03
34	GO:0032432: actin filament bundle	1.78E-03
35	GO:0009526: plastid envelope	2.38E-03
36	GO:0055035: plastid thylakoid membrane	3.05E-03
37	GO:0009536: plastid	4.13E-03
38	GO:0009501: amyloplast	6.22E-03
39	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.14E-03
40	GO:0015934: large ribosomal subunit	9.53E-03
41	GO:0005884: actin filament	1.12E-02
42	GO:0005770: late endosome	3.04E-02
43	GO:0009522: photosystem I	3.20E-02
44	GO:0010319: stromule	4.22E-02
45	GO:0009295: nucleoid	4.22E-02
46	GO:0030529: intracellular ribonucleoprotein complex	4.58E-02