GO Enrichment Analysis of Co-expressed Genes with
AT5G62790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 1.03E-11 |
| 7 | GO:0015979: photosynthesis | 3.39E-07 |
| 8 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.74E-06 |
| 9 | GO:0006000: fructose metabolic process | 6.40E-06 |
| 10 | GO:0005983: starch catabolic process | 1.56E-05 |
| 11 | GO:0015994: chlorophyll metabolic process | 2.72E-05 |
| 12 | GO:0019252: starch biosynthetic process | 1.46E-04 |
| 13 | GO:0009642: response to light intensity | 1.53E-04 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.91E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 1.91E-04 |
| 16 | GO:0080051: cutin transport | 1.91E-04 |
| 17 | GO:0065002: intracellular protein transmembrane transport | 1.91E-04 |
| 18 | GO:0006106: fumarate metabolic process | 1.91E-04 |
| 19 | GO:0010028: xanthophyll cycle | 1.91E-04 |
| 20 | GO:0034337: RNA folding | 1.91E-04 |
| 21 | GO:0000305: response to oxygen radical | 1.91E-04 |
| 22 | GO:0006002: fructose 6-phosphate metabolic process | 1.91E-04 |
| 23 | GO:0043953: protein transport by the Tat complex | 1.91E-04 |
| 24 | GO:0051775: response to redox state | 1.91E-04 |
| 25 | GO:0071277: cellular response to calcium ion | 1.91E-04 |
| 26 | GO:0010027: thylakoid membrane organization | 2.70E-04 |
| 27 | GO:0010205: photoinhibition | 2.78E-04 |
| 28 | GO:0080005: photosystem stoichiometry adjustment | 4.29E-04 |
| 29 | GO:1900871: chloroplast mRNA modification | 4.29E-04 |
| 30 | GO:0018026: peptidyl-lysine monomethylation | 4.29E-04 |
| 31 | GO:0016122: xanthophyll metabolic process | 4.29E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.29E-04 |
| 33 | GO:0015908: fatty acid transport | 4.29E-04 |
| 34 | GO:0034755: iron ion transmembrane transport | 4.29E-04 |
| 35 | GO:0035304: regulation of protein dephosphorylation | 4.29E-04 |
| 36 | GO:0006108: malate metabolic process | 4.93E-04 |
| 37 | GO:0006094: gluconeogenesis | 4.93E-04 |
| 38 | GO:0005986: sucrose biosynthetic process | 4.93E-04 |
| 39 | GO:0010207: photosystem II assembly | 5.55E-04 |
| 40 | GO:0006954: inflammatory response | 6.99E-04 |
| 41 | GO:0016050: vesicle organization | 6.99E-04 |
| 42 | GO:0031022: nuclear migration along microfilament | 6.99E-04 |
| 43 | GO:1902448: positive regulation of shade avoidance | 6.99E-04 |
| 44 | GO:0071484: cellular response to light intensity | 9.97E-04 |
| 45 | GO:0009152: purine ribonucleotide biosynthetic process | 9.97E-04 |
| 46 | GO:0046653: tetrahydrofolate metabolic process | 9.97E-04 |
| 47 | GO:0006107: oxaloacetate metabolic process | 9.97E-04 |
| 48 | GO:0080170: hydrogen peroxide transmembrane transport | 9.97E-04 |
| 49 | GO:0006734: NADH metabolic process | 1.32E-03 |
| 50 | GO:0010021: amylopectin biosynthetic process | 1.32E-03 |
| 51 | GO:0010222: stem vascular tissue pattern formation | 1.32E-03 |
| 52 | GO:0010109: regulation of photosynthesis | 1.32E-03 |
| 53 | GO:0009765: photosynthesis, light harvesting | 1.32E-03 |
| 54 | GO:0006109: regulation of carbohydrate metabolic process | 1.32E-03 |
| 55 | GO:0045727: positive regulation of translation | 1.32E-03 |
| 56 | GO:0006749: glutathione metabolic process | 1.32E-03 |
| 57 | GO:0032543: mitochondrial translation | 1.68E-03 |
| 58 | GO:0010117: photoprotection | 1.68E-03 |
| 59 | GO:0009904: chloroplast accumulation movement | 1.68E-03 |
| 60 | GO:0042549: photosystem II stabilization | 2.07E-03 |
| 61 | GO:0016554: cytidine to uridine editing | 2.07E-03 |
| 62 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.07E-03 |
| 63 | GO:0009903: chloroplast avoidance movement | 2.49E-03 |
| 64 | GO:1901259: chloroplast rRNA processing | 2.49E-03 |
| 65 | GO:0016126: sterol biosynthetic process | 2.63E-03 |
| 66 | GO:0009395: phospholipid catabolic process | 2.93E-03 |
| 67 | GO:0007623: circadian rhythm | 3.22E-03 |
| 68 | GO:0005975: carbohydrate metabolic process | 3.22E-03 |
| 69 | GO:0009704: de-etiolation | 3.40E-03 |
| 70 | GO:0016559: peroxisome fission | 3.40E-03 |
| 71 | GO:0005978: glycogen biosynthetic process | 3.40E-03 |
| 72 | GO:0030091: protein repair | 3.40E-03 |
| 73 | GO:0018298: protein-chromophore linkage | 3.42E-03 |
| 74 | GO:0007166: cell surface receptor signaling pathway | 3.82E-03 |
| 75 | GO:0032544: plastid translation | 3.88E-03 |
| 76 | GO:0071482: cellular response to light stimulus | 3.88E-03 |
| 77 | GO:0090333: regulation of stomatal closure | 4.40E-03 |
| 78 | GO:0006754: ATP biosynthetic process | 4.40E-03 |
| 79 | GO:0000373: Group II intron splicing | 4.40E-03 |
| 80 | GO:0006099: tricarboxylic acid cycle | 4.52E-03 |
| 81 | GO:1900865: chloroplast RNA modification | 4.93E-03 |
| 82 | GO:0009735: response to cytokinin | 5.47E-03 |
| 83 | GO:0009644: response to high light intensity | 6.02E-03 |
| 84 | GO:0043085: positive regulation of catalytic activity | 6.06E-03 |
| 85 | GO:0006879: cellular iron ion homeostasis | 6.06E-03 |
| 86 | GO:0009750: response to fructose | 6.06E-03 |
| 87 | GO:0016485: protein processing | 6.06E-03 |
| 88 | GO:0019684: photosynthesis, light reaction | 6.06E-03 |
| 89 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.66E-03 |
| 90 | GO:0010628: positive regulation of gene expression | 7.28E-03 |
| 91 | GO:0010588: cotyledon vascular tissue pattern formation | 7.28E-03 |
| 92 | GO:0006364: rRNA processing | 7.50E-03 |
| 93 | GO:0010020: chloroplast fission | 7.91E-03 |
| 94 | GO:0019253: reductive pentose-phosphate cycle | 7.91E-03 |
| 95 | GO:0071732: cellular response to nitric oxide | 8.57E-03 |
| 96 | GO:0005985: sucrose metabolic process | 8.57E-03 |
| 97 | GO:0055085: transmembrane transport | 9.00E-03 |
| 98 | GO:0010025: wax biosynthetic process | 9.25E-03 |
| 99 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.25E-03 |
| 100 | GO:0006833: water transport | 9.25E-03 |
| 101 | GO:0045454: cell redox homeostasis | 9.28E-03 |
| 102 | GO:0006418: tRNA aminoacylation for protein translation | 1.07E-02 |
| 103 | GO:0035428: hexose transmembrane transport | 1.21E-02 |
| 104 | GO:0016226: iron-sulfur cluster assembly | 1.21E-02 |
| 105 | GO:0071369: cellular response to ethylene stimulus | 1.29E-02 |
| 106 | GO:0034220: ion transmembrane transport | 1.53E-02 |
| 107 | GO:0015991: ATP hydrolysis coupled proton transport | 1.53E-02 |
| 108 | GO:0006662: glycerol ether metabolic process | 1.62E-02 |
| 109 | GO:0046323: glucose import | 1.62E-02 |
| 110 | GO:0007018: microtubule-based movement | 1.70E-02 |
| 111 | GO:0055114: oxidation-reduction process | 1.79E-02 |
| 112 | GO:0016032: viral process | 1.97E-02 |
| 113 | GO:0071281: cellular response to iron ion | 2.06E-02 |
| 114 | GO:0009567: double fertilization forming a zygote and endosperm | 2.15E-02 |
| 115 | GO:0009611: response to wounding | 2.57E-02 |
| 116 | GO:0042128: nitrate assimilation | 2.64E-02 |
| 117 | GO:0016311: dephosphorylation | 2.84E-02 |
| 118 | GO:0009658: chloroplast organization | 2.87E-02 |
| 119 | GO:0000160: phosphorelay signal transduction system | 3.05E-02 |
| 120 | GO:0009631: cold acclimation | 3.27E-02 |
| 121 | GO:0009853: photorespiration | 3.49E-02 |
| 122 | GO:0034599: cellular response to oxidative stress | 3.60E-02 |
| 123 | GO:0006631: fatty acid metabolic process | 3.94E-02 |
| 124 | GO:0051707: response to other organism | 4.18E-02 |
| 125 | GO:0006869: lipid transport | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 4 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 5 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 6 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 7 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 8 | GO:0051060: pullulanase activity | 0.00E+00 |
| 9 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 10 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.74E-06 |
| 11 | GO:0004506: squalene monooxygenase activity | 2.72E-05 |
| 12 | GO:0019203: carbohydrate phosphatase activity | 1.91E-04 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.91E-04 |
| 14 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.91E-04 |
| 15 | GO:0015245: fatty acid transporter activity | 1.91E-04 |
| 16 | GO:0004333: fumarate hydratase activity | 1.91E-04 |
| 17 | GO:0035671: enone reductase activity | 1.91E-04 |
| 18 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.91E-04 |
| 19 | GO:0050308: sugar-phosphatase activity | 1.91E-04 |
| 20 | GO:0010242: oxygen evolving activity | 1.91E-04 |
| 21 | GO:0045485: omega-6 fatty acid desaturase activity | 1.91E-04 |
| 22 | GO:0004856: xylulokinase activity | 1.91E-04 |
| 23 | GO:0004362: glutathione-disulfide reductase activity | 4.29E-04 |
| 24 | GO:0047746: chlorophyllase activity | 4.29E-04 |
| 25 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.29E-04 |
| 26 | GO:0033201: alpha-1,4-glucan synthase activity | 4.29E-04 |
| 27 | GO:0008266: poly(U) RNA binding | 5.55E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.99E-04 |
| 29 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.99E-04 |
| 30 | GO:0004373: glycogen (starch) synthase activity | 6.99E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 6.99E-04 |
| 32 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 9.97E-04 |
| 33 | GO:0019201: nucleotide kinase activity | 9.97E-04 |
| 34 | GO:0022891: substrate-specific transmembrane transporter activity | 1.09E-03 |
| 35 | GO:0009011: starch synthase activity | 1.32E-03 |
| 36 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.32E-03 |
| 37 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.32E-03 |
| 38 | GO:0016279: protein-lysine N-methyltransferase activity | 1.32E-03 |
| 39 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.32E-03 |
| 40 | GO:0043495: protein anchor | 1.32E-03 |
| 41 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.68E-03 |
| 42 | GO:0004556: alpha-amylase activity | 2.07E-03 |
| 43 | GO:0016615: malate dehydrogenase activity | 2.07E-03 |
| 44 | GO:2001070: starch binding | 2.07E-03 |
| 45 | GO:0035673: oligopeptide transmembrane transporter activity | 2.07E-03 |
| 46 | GO:0042578: phosphoric ester hydrolase activity | 2.07E-03 |
| 47 | GO:0004017: adenylate kinase activity | 2.49E-03 |
| 48 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.49E-03 |
| 49 | GO:0030060: L-malate dehydrogenase activity | 2.49E-03 |
| 50 | GO:0016168: chlorophyll binding | 2.78E-03 |
| 51 | GO:0019899: enzyme binding | 2.93E-03 |
| 52 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.95E-03 |
| 53 | GO:0043022: ribosome binding | 3.40E-03 |
| 54 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.37E-03 |
| 55 | GO:0042802: identical protein binding | 4.37E-03 |
| 56 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 4.40E-03 |
| 57 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 4.40E-03 |
| 58 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.40E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 4.93E-03 |
| 60 | GO:0008047: enzyme activator activity | 5.48E-03 |
| 61 | GO:0005198: structural molecule activity | 6.26E-03 |
| 62 | GO:0016787: hydrolase activity | 6.33E-03 |
| 63 | GO:0015198: oligopeptide transporter activity | 6.66E-03 |
| 64 | GO:0050660: flavin adenine dinucleotide binding | 6.76E-03 |
| 65 | GO:0009982: pseudouridine synthase activity | 7.28E-03 |
| 66 | GO:0004565: beta-galactosidase activity | 7.28E-03 |
| 67 | GO:0051536: iron-sulfur cluster binding | 9.94E-03 |
| 68 | GO:0004857: enzyme inhibitor activity | 9.94E-03 |
| 69 | GO:0005528: FK506 binding | 9.94E-03 |
| 70 | GO:0004176: ATP-dependent peptidase activity | 1.14E-02 |
| 71 | GO:0009055: electron carrier activity | 1.32E-02 |
| 72 | GO:0019843: rRNA binding | 1.34E-02 |
| 73 | GO:0047134: protein-disulfide reductase activity | 1.45E-02 |
| 74 | GO:0004812: aminoacyl-tRNA ligase activity | 1.45E-02 |
| 75 | GO:0050662: coenzyme binding | 1.70E-02 |
| 76 | GO:0004791: thioredoxin-disulfide reductase activity | 1.70E-02 |
| 77 | GO:0005355: glucose transmembrane transporter activity | 1.70E-02 |
| 78 | GO:0019901: protein kinase binding | 1.79E-02 |
| 79 | GO:0008017: microtubule binding | 1.94E-02 |
| 80 | GO:0004518: nuclease activity | 1.97E-02 |
| 81 | GO:0000156: phosphorelay response regulator activity | 2.06E-02 |
| 82 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.06E-02 |
| 83 | GO:0015250: water channel activity | 2.44E-02 |
| 84 | GO:0016491: oxidoreductase activity | 2.73E-02 |
| 85 | GO:0004721: phosphoprotein phosphatase activity | 2.74E-02 |
| 86 | GO:0016788: hydrolase activity, acting on ester bonds | 2.93E-02 |
| 87 | GO:0004222: metalloendopeptidase activity | 3.16E-02 |
| 88 | GO:0003729: mRNA binding | 3.27E-02 |
| 89 | GO:0003746: translation elongation factor activity | 3.49E-02 |
| 90 | GO:0008233: peptidase activity | 3.50E-02 |
| 91 | GO:0003993: acid phosphatase activity | 3.60E-02 |
| 92 | GO:0050661: NADP binding | 3.83E-02 |
| 93 | GO:0005525: GTP binding | 4.62E-02 |
| 94 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.67E-47 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.47E-26 |
| 5 | GO:0009534: chloroplast thylakoid | 3.40E-23 |
| 6 | GO:0009570: chloroplast stroma | 5.34E-21 |
| 7 | GO:0009941: chloroplast envelope | 3.35E-17 |
| 8 | GO:0009579: thylakoid | 4.83E-11 |
| 9 | GO:0010287: plastoglobule | 1.86E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.19E-06 |
| 11 | GO:0031977: thylakoid lumen | 6.14E-05 |
| 12 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.91E-04 |
| 13 | GO:0031361: integral component of thylakoid membrane | 1.91E-04 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.33E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 5.55E-04 |
| 16 | GO:0009897: external side of plasma membrane | 6.99E-04 |
| 17 | GO:0033281: TAT protein transport complex | 6.99E-04 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 8.41E-04 |
| 19 | GO:0009706: chloroplast inner membrane | 1.61E-03 |
| 20 | GO:0009523: photosystem II | 1.71E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 1.71E-03 |
| 22 | GO:0010319: stromule | 2.34E-03 |
| 23 | GO:0009501: amyloplast | 3.40E-03 |
| 24 | GO:0048046: apoplast | 6.28E-03 |
| 25 | GO:0032040: small-subunit processome | 6.66E-03 |
| 26 | GO:0009508: plastid chromosome | 7.28E-03 |
| 27 | GO:0031969: chloroplast membrane | 7.38E-03 |
| 28 | GO:0042651: thylakoid membrane | 1.07E-02 |
| 29 | GO:0005623: cell | 1.38E-02 |
| 30 | GO:0005871: kinesin complex | 1.45E-02 |
| 31 | GO:0009522: photosystem I | 1.70E-02 |
| 32 | GO:0016021: integral component of membrane | 2.14E-02 |
| 33 | GO:0009295: nucleoid | 2.25E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 2.44E-02 |
| 35 | GO:0009707: chloroplast outer membrane | 2.95E-02 |