co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010111: glyoxysome organization	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0010360: negative regulation of anion channel activity	0.00E+00
4	GO:0032497: detection of lipopolysaccharide	0.00E+00
5	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
6	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
7	GO:0006983: ER overload response	0.00E+00
8	GO:0071578: zinc II ion transmembrane import	0.00E+00
9	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
10	GO:0000188: inactivation of MAPK activity	0.00E+00
11	GO:0007160: cell-matrix adhesion	0.00E+00
12	GO:0016559: peroxisome fission	2.70E-06
13	GO:0006014: D-ribose metabolic process	6.73E-05
14	GO:0006635: fatty acid beta-oxidation	1.69E-04
15	GO:0035344: hypoxanthine transport	1.95E-04
16	GO:1902361: mitochondrial pyruvate transmembrane transport	1.95E-04
17	GO:0035494: SNARE complex disassembly	1.95E-04
18	GO:0031338: regulation of vesicle fusion	1.95E-04
19	GO:0098721: uracil import across plasma membrane	1.95E-04
20	GO:0098702: adenine import across plasma membrane	1.95E-04
21	GO:0035266: meristem growth	1.95E-04
22	GO:0098710: guanine import across plasma membrane	1.95E-04
23	GO:0048363: mucilage pectin metabolic process	1.95E-04
24	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.95E-04
25	GO:0007292: female gamete generation	1.95E-04
26	GO:0006468: protein phosphorylation	2.85E-04
27	GO:0043069: negative regulation of programmed cell death	3.37E-04
28	GO:0050684: regulation of mRNA processing	4.38E-04
29	GO:0050994: regulation of lipid catabolic process	4.38E-04
30	GO:0007584: response to nutrient	4.38E-04
31	GO:0043066: negative regulation of apoptotic process	4.38E-04
32	GO:0051788: response to misfolded protein	4.38E-04
33	GO:0006850: mitochondrial pyruvate transport	4.38E-04
34	GO:0015865: purine nucleotide transport	4.38E-04
35	GO:0051258: protein polymerization	4.38E-04
36	GO:0042325: regulation of phosphorylation	4.38E-04
37	GO:0019441: tryptophan catabolic process to kynurenine	4.38E-04
38	GO:0009308: amine metabolic process	4.38E-04
39	GO:0019395: fatty acid oxidation	4.38E-04
40	GO:0000266: mitochondrial fission	4.48E-04
41	GO:0010150: leaf senescence	5.71E-04
42	GO:0060968: regulation of gene silencing	7.14E-04
43	GO:0032784: regulation of DNA-templated transcription, elongation	7.14E-04
44	GO:0090630: activation of GTPase activity	7.14E-04
45	GO:0031408: oxylipin biosynthetic process	9.50E-04
46	GO:0051260: protein homooligomerization	9.50E-04
47	GO:0046902: regulation of mitochondrial membrane permeability	1.02E-03
48	GO:0072334: UDP-galactose transmembrane transport	1.02E-03
49	GO:0015749: monosaccharide transport	1.02E-03
50	GO:0006809: nitric oxide biosynthetic process	1.02E-03
51	GO:0009399: nitrogen fixation	1.02E-03
52	GO:0080001: mucilage extrusion from seed coat	1.02E-03
53	GO:0001676: long-chain fatty acid metabolic process	1.02E-03
54	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.02E-03
55	GO:0006624: vacuolar protein processing	1.02E-03
56	GO:2001289: lipid X metabolic process	1.02E-03
57	GO:0070301: cellular response to hydrogen peroxide	1.02E-03
58	GO:0010107: potassium ion import	1.35E-03
59	GO:0061088: regulation of sequestering of zinc ion	1.35E-03
60	GO:0042991: transcription factor import into nucleus	1.35E-03
61	GO:0006542: glutamine biosynthetic process	1.35E-03
62	GO:0033320: UDP-D-xylose biosynthetic process	1.35E-03
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.60E-03
64	GO:0010225: response to UV-C	1.72E-03
65	GO:0009247: glycolipid biosynthetic process	1.72E-03
66	GO:0006090: pyruvate metabolic process	1.72E-03
67	GO:0007029: endoplasmic reticulum organization	1.72E-03
68	GO:0019252: starch biosynthetic process	1.76E-03
69	GO:0043248: proteasome assembly	2.12E-03
70	GO:0042732: D-xylose metabolic process	2.12E-03
71	GO:0045040: protein import into mitochondrial outer membrane	2.12E-03
72	GO:1900425: negative regulation of defense response to bacterium	2.12E-03
73	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.12E-03
74	GO:0048827: phyllome development	2.12E-03
75	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.12E-03
76	GO:0048232: male gamete generation	2.12E-03
77	GO:0006914: autophagy	2.28E-03
78	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.54E-03
79	GO:0048280: vesicle fusion with Golgi apparatus	2.54E-03
80	GO:0071669: plant-type cell wall organization or biogenesis	3.00E-03
81	GO:0006333: chromatin assembly or disassembly	3.00E-03
82	GO:1902074: response to salt	3.00E-03
83	GO:0009395: phospholipid catabolic process	3.00E-03
84	GO:1900150: regulation of defense response to fungus	3.47E-03
85	GO:0019375: galactolipid biosynthetic process	3.47E-03
86	GO:0010078: maintenance of root meristem identity	3.47E-03
87	GO:2000070: regulation of response to water deprivation	3.47E-03
88	GO:0009827: plant-type cell wall modification	3.97E-03
89	GO:0030968: endoplasmic reticulum unfolded protein response	3.97E-03
90	GO:0045087: innate immune response	4.47E-03
91	GO:0009051: pentose-phosphate shunt, oxidative branch	4.49E-03
92	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.04E-03
93	GO:0008202: steroid metabolic process	5.04E-03
94	GO:0006896: Golgi to vacuole transport	5.61E-03
95	GO:0007064: mitotic sister chromatid cohesion	5.61E-03
96	GO:0009688: abscisic acid biosynthetic process	5.61E-03
97	GO:0048829: root cap development	5.61E-03
98	GO:0010629: negative regulation of gene expression	5.61E-03
99	GO:0051707: response to other organism	5.76E-03
100	GO:0010015: root morphogenesis	6.20E-03
101	GO:0000038: very long-chain fatty acid metabolic process	6.20E-03
102	GO:0071365: cellular response to auxin stimulus	6.81E-03
103	GO:0006626: protein targeting to mitochondrion	7.44E-03
104	GO:0006108: malate metabolic process	7.44E-03
105	GO:0007034: vacuolar transport	8.10E-03
106	GO:0009933: meristem structural organization	8.10E-03
107	GO:0006446: regulation of translational initiation	8.10E-03
108	GO:0016192: vesicle-mediated transport	8.21E-03
109	GO:0046777: protein autophosphorylation	8.38E-03
110	GO:0007031: peroxisome organization	8.77E-03
111	GO:0010167: response to nitrate	8.77E-03
112	GO:0090351: seedling development	8.77E-03
113	GO:0009225: nucleotide-sugar metabolic process	8.77E-03
114	GO:0034976: response to endoplasmic reticulum stress	9.46E-03
115	GO:0048367: shoot system development	9.47E-03
116	GO:0045454: cell redox homeostasis	9.68E-03
117	GO:0006886: intracellular protein transport	1.01E-02
118	GO:0009695: jasmonic acid biosynthetic process	1.09E-02
119	GO:0006825: copper ion transport	1.09E-02
120	GO:0030433: ubiquitin-dependent ERAD pathway	1.24E-02
121	GO:0007005: mitochondrion organization	1.24E-02
122	GO:0071215: cellular response to abscisic acid stimulus	1.32E-02
123	GO:0048364: root development	1.33E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.48E-02
125	GO:0042147: retrograde transport, endosome to Golgi	1.48E-02
126	GO:0042631: cellular response to water deprivation	1.57E-02
127	GO:0000271: polysaccharide biosynthetic process	1.57E-02
128	GO:0010118: stomatal movement	1.57E-02
129	GO:0046323: glucose import	1.65E-02
130	GO:0048544: recognition of pollen	1.74E-02
131	GO:0061025: membrane fusion	1.74E-02
132	GO:0009873: ethylene-activated signaling pathway	1.75E-02
133	GO:0006623: protein targeting to vacuole	1.83E-02
134	GO:0048825: cotyledon development	1.83E-02
135	GO:0009749: response to glucose	1.83E-02
136	GO:0009851: auxin biosynthetic process	1.83E-02
137	GO:0071554: cell wall organization or biogenesis	1.92E-02
138	GO:0006891: intra-Golgi vesicle-mediated transport	1.92E-02
139	GO:0010583: response to cyclopentenone	2.01E-02
140	GO:0009630: gravitropism	2.01E-02
141	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.15E-02
142	GO:0006470: protein dephosphorylation	2.19E-02
143	GO:0010468: regulation of gene expression	2.29E-02
144	GO:0001666: response to hypoxia	2.50E-02
145	GO:0010029: regulation of seed germination	2.60E-02
146	GO:0009816: defense response to bacterium, incompatible interaction	2.60E-02
147	GO:0042128: nitrate assimilation	2.70E-02
148	GO:0006888: ER to Golgi vesicle-mediated transport	2.80E-02
149	GO:0048573: photoperiodism, flowering	2.80E-02
150	GO:0030244: cellulose biosynthetic process	3.02E-02
151	GO:0009832: plant-type cell wall biogenesis	3.12E-02
152	GO:0010311: lateral root formation	3.12E-02
153	GO:0048767: root hair elongation	3.12E-02
154	GO:0006499: N-terminal protein myristoylation	3.23E-02
155	GO:0010119: regulation of stomatal movement	3.34E-02
156	GO:0010043: response to zinc ion	3.34E-02
157	GO:0009723: response to ethylene	3.43E-02
158	GO:0048366: leaf development	3.49E-02
159	GO:0009853: photorespiration	3.57E-02
160	GO:0016051: carbohydrate biosynthetic process	3.57E-02
161	GO:0046686: response to cadmium ion	3.67E-02
162	GO:0006099: tricarboxylic acid cycle	3.68E-02
163	GO:0006839: mitochondrial transport	3.92E-02
164	GO:0006631: fatty acid metabolic process	4.03E-02
165	GO:0006897: endocytosis	4.03E-02
166	GO:0000209: protein polyubiquitination	4.40E-02
167	GO:0009965: leaf morphogenesis	4.64E-02
168	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010293: abscisic aldehyde oxidase activity	0.00E+00
2	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
3	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
4	GO:0004674: protein serine/threonine kinase activity	2.04E-06
5	GO:0016301: kinase activity	2.25E-05
6	GO:0004747: ribokinase activity	9.36E-05
7	GO:0008865: fructokinase activity	1.59E-04
8	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	1.95E-04
9	GO:0015208: guanine transmembrane transporter activity	1.95E-04
10	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.95E-04
11	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	1.95E-04
12	GO:0015294: solute:cation symporter activity	1.95E-04
13	GO:0052595: aliphatic-amine oxidase activity	1.95E-04
14	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.95E-04
15	GO:0015207: adenine transmembrane transporter activity	1.95E-04
16	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	1.95E-04
17	GO:0046481: digalactosyldiacylglycerol synthase activity	1.95E-04
18	GO:0009679: hexose:proton symporter activity	1.95E-04
19	GO:0005524: ATP binding	3.62E-04
20	GO:0004061: arylformamidase activity	4.38E-04
21	GO:0003988: acetyl-CoA C-acyltransferase activity	4.38E-04
22	GO:0004566: beta-glucuronidase activity	4.38E-04
23	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.09E-04
24	GO:0019829: cation-transporting ATPase activity	7.14E-04
25	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.14E-04
26	GO:0050833: pyruvate transmembrane transporter activity	7.14E-04
27	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.14E-04
28	GO:0005483: soluble NSF attachment protein activity	7.14E-04
29	GO:0035250: UDP-galactosyltransferase activity	1.02E-03
30	GO:0004108: citrate (Si)-synthase activity	1.02E-03
31	GO:0030527: structural constituent of chromatin	1.02E-03
32	GO:0004300: enoyl-CoA hydratase activity	1.02E-03
33	GO:0015210: uracil transmembrane transporter activity	1.35E-03
34	GO:0004470: malic enzyme activity	1.35E-03
35	GO:0004031: aldehyde oxidase activity	1.35E-03
36	GO:0050302: indole-3-acetaldehyde oxidase activity	1.35E-03
37	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.35E-03
38	GO:0019905: syntaxin binding	1.35E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.35E-03
40	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.35E-03
41	GO:0005459: UDP-galactose transmembrane transporter activity	1.72E-03
42	GO:0015145: monosaccharide transmembrane transporter activity	1.72E-03
43	GO:0008948: oxaloacetate decarboxylase activity	1.72E-03
44	GO:0017137: Rab GTPase binding	1.72E-03
45	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.72E-03
46	GO:0005471: ATP:ADP antiporter activity	1.72E-03
47	GO:0004356: glutamate-ammonia ligase activity	1.72E-03
48	GO:0015562: efflux transmembrane transporter activity	2.12E-03
49	GO:0036402: proteasome-activating ATPase activity	2.12E-03
50	GO:0048040: UDP-glucuronate decarboxylase activity	2.12E-03
51	GO:0051753: mannan synthase activity	2.54E-03
52	GO:0004012: phospholipid-translocating ATPase activity	2.54E-03
53	GO:0070403: NAD+ binding	2.54E-03
54	GO:0051213: dioxygenase activity	2.71E-03
55	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.00E-03
56	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.00E-03
57	GO:0004672: protein kinase activity	3.22E-03
58	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.47E-03
59	GO:0005096: GTPase activator activity	3.71E-03
60	GO:0005267: potassium channel activity	3.97E-03
61	GO:0005375: copper ion transmembrane transporter activity	3.97E-03
62	GO:0008142: oxysterol binding	3.97E-03
63	GO:0071949: FAD binding	4.49E-03
64	GO:0004743: pyruvate kinase activity	5.04E-03
65	GO:0030955: potassium ion binding	5.04E-03
66	GO:0004713: protein tyrosine kinase activity	5.61E-03
67	GO:0004177: aminopeptidase activity	6.20E-03
68	GO:0004521: endoribonuclease activity	6.81E-03
69	GO:0019888: protein phosphatase regulator activity	7.44E-03
70	GO:0004175: endopeptidase activity	8.10E-03
71	GO:0008131: primary amine oxidase activity	8.10E-03
72	GO:0031625: ubiquitin protein ligase binding	8.59E-03
73	GO:0017025: TBP-class protein binding	8.77E-03
74	GO:0004725: protein tyrosine phosphatase activity	9.46E-03
75	GO:0043130: ubiquitin binding	1.02E-02
76	GO:0005385: zinc ion transmembrane transporter activity	1.02E-02
77	GO:0008324: cation transmembrane transporter activity	1.09E-02
78	GO:0035251: UDP-glucosyltransferase activity	1.17E-02
79	GO:0016779: nucleotidyltransferase activity	1.24E-02
80	GO:0016760: cellulose synthase (UDP-forming) activity	1.32E-02
81	GO:0009055: electron carrier activity	1.38E-02
82	GO:0003756: protein disulfide isomerase activity	1.40E-02
83	GO:0005249: voltage-gated potassium channel activity	1.57E-02
84	GO:0015144: carbohydrate transmembrane transporter activity	1.66E-02
85	GO:0010181: FMN binding	1.74E-02
86	GO:0016853: isomerase activity	1.74E-02
87	GO:0004872: receptor activity	1.83E-02
88	GO:0005351: sugar:proton symporter activity	1.87E-02
89	GO:0048038: quinone binding	1.92E-02
90	GO:0004197: cysteine-type endopeptidase activity	2.01E-02
91	GO:0008194: UDP-glycosyltransferase activity	2.15E-02
92	GO:0016887: ATPase activity	2.20E-02
93	GO:0016759: cellulose synthase activity	2.20E-02
94	GO:0008483: transaminase activity	2.30E-02
95	GO:0016597: amino acid binding	2.40E-02
96	GO:0016413: O-acetyltransferase activity	2.40E-02
97	GO:0030247: polysaccharide binding	2.80E-02
98	GO:0000287: magnesium ion binding	2.91E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.02E-02
100	GO:0003682: chromatin binding	3.14E-02
101	GO:0004222: metalloendopeptidase activity	3.23E-02
102	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.34E-02
103	GO:0050660: flavin adenine dinucleotide binding	3.43E-02
104	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.57E-02
105	GO:0003993: acid phosphatase activity	3.68E-02
106	GO:0030246: carbohydrate binding	3.77E-02
107	GO:0000149: SNARE binding	3.80E-02
108	GO:0061630: ubiquitin protein ligase activity	3.87E-02
109	GO:0005507: copper ion binding	4.04E-02
110	GO:0005484: SNAP receptor activity	4.27E-02
111	GO:0051537: 2 iron, 2 sulfur cluster binding	4.52E-02
112	GO:0051287: NAD binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0005886: plasma membrane	9.19E-07
3	GO:0030173: integral component of Golgi membrane	9.36E-05
4	GO:0005777: peroxisome	9.67E-05
5	GO:0016021: integral component of membrane	1.24E-04
6	GO:0005778: peroxisomal membrane	2.41E-04
7	GO:0005774: vacuolar membrane	6.96E-04
8	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.14E-04
9	GO:0005741: mitochondrial outer membrane	9.50E-04
10	GO:0000323: lytic vacuole	1.02E-03
11	GO:0008076: voltage-gated potassium channel complex	1.02E-03
12	GO:0005829: cytosol	1.32E-03
13	GO:0005776: autophagosome	1.35E-03
14	GO:0030140: trans-Golgi network transport vesicle	2.12E-03
15	GO:0031597: cytosolic proteasome complex	2.54E-03
16	GO:0000815: ESCRT III complex	2.54E-03
17	GO:0031595: nuclear proteasome complex	3.00E-03
18	GO:0031305: integral component of mitochondrial inner membrane	3.47E-03
19	GO:0012507: ER to Golgi transport vesicle membrane	3.47E-03
20	GO:0030131: clathrin adaptor complex	3.47E-03
21	GO:0005789: endoplasmic reticulum membrane	3.48E-03
22	GO:0005802: trans-Golgi network	3.63E-03
23	GO:0005779: integral component of peroxisomal membrane	3.97E-03
24	GO:0005742: mitochondrial outer membrane translocase complex	3.97E-03
25	GO:0009514: glyoxysome	3.97E-03
26	GO:0005783: endoplasmic reticulum	4.22E-03
27	GO:0005768: endosome	4.55E-03
28	GO:0008540: proteasome regulatory particle, base subcomplex	5.04E-03
29	GO:0031902: late endosome membrane	5.31E-03
30	GO:0031201: SNARE complex	5.31E-03
31	GO:0030125: clathrin vesicle coat	5.61E-03
32	GO:0005765: lysosomal membrane	6.20E-03
33	GO:0016020: membrane	7.36E-03
34	GO:0030176: integral component of endoplasmic reticulum membrane	8.77E-03
35	GO:0005794: Golgi apparatus	9.12E-03
36	GO:0012505: endomembrane system	1.07E-02
37	GO:0045271: respiratory chain complex I	1.09E-02
38	GO:0005905: clathrin-coated pit	1.17E-02
39	GO:0031410: cytoplasmic vesicle	1.24E-02
40	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.40E-02
41	GO:0005773: vacuole	1.51E-02
42	GO:0005770: late endosome	1.65E-02
43	GO:0000785: chromatin	2.01E-02
44	GO:0005788: endoplasmic reticulum lumen	2.60E-02
45	GO:0009707: chloroplast outer membrane	3.02E-02
46	GO:0000151: ubiquitin ligase complex	3.02E-02
47	GO:0000325: plant-type vacuole	3.34E-02
48	GO:0000786: nucleosome	3.46E-02