GO Enrichment Analysis of Co-expressed Genes with
AT5G62690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0010394: homogalacturonan metabolic process | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0006633: fatty acid biosynthetic process | 6.52E-07 |
| 7 | GO:0032544: plastid translation | 1.24E-06 |
| 8 | GO:0010025: wax biosynthetic process | 1.25E-05 |
| 9 | GO:0006546: glycine catabolic process | 1.25E-05 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 3.11E-05 |
| 11 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 3.11E-05 |
| 12 | GO:0042335: cuticle development | 4.13E-05 |
| 13 | GO:0009657: plastid organization | 9.69E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.22E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 1.22E-04 |
| 16 | GO:0045488: pectin metabolic process | 1.22E-04 |
| 17 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.82E-04 |
| 18 | GO:0010020: chloroplast fission | 3.00E-04 |
| 19 | GO:0007017: microtubule-based process | 4.61E-04 |
| 20 | GO:0010581: regulation of starch biosynthetic process | 4.65E-04 |
| 21 | GO:0045793: positive regulation of cell size | 4.65E-04 |
| 22 | GO:2001295: malonyl-CoA biosynthetic process | 4.65E-04 |
| 23 | GO:0031408: oxylipin biosynthetic process | 5.06E-04 |
| 24 | GO:0006165: nucleoside diphosphate phosphorylation | 6.66E-04 |
| 25 | GO:0006228: UTP biosynthetic process | 6.66E-04 |
| 26 | GO:0006424: glutamyl-tRNA aminoacylation | 6.66E-04 |
| 27 | GO:0006241: CTP biosynthetic process | 6.66E-04 |
| 28 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 6.66E-04 |
| 29 | GO:0015979: photosynthesis | 6.88E-04 |
| 30 | GO:0044206: UMP salvage | 8.84E-04 |
| 31 | GO:0031122: cytoplasmic microtubule organization | 8.84E-04 |
| 32 | GO:0071483: cellular response to blue light | 8.84E-04 |
| 33 | GO:0051781: positive regulation of cell division | 8.84E-04 |
| 34 | GO:0019464: glycine decarboxylation via glycine cleavage system | 8.84E-04 |
| 35 | GO:0006085: acetyl-CoA biosynthetic process | 8.84E-04 |
| 36 | GO:0006183: GTP biosynthetic process | 8.84E-04 |
| 37 | GO:0010583: response to cyclopentenone | 1.06E-03 |
| 38 | GO:0000304: response to singlet oxygen | 1.12E-03 |
| 39 | GO:0043097: pyrimidine nucleoside salvage | 1.12E-03 |
| 40 | GO:0032543: mitochondrial translation | 1.12E-03 |
| 41 | GO:0006461: protein complex assembly | 1.12E-03 |
| 42 | GO:0006206: pyrimidine nucleobase metabolic process | 1.37E-03 |
| 43 | GO:0010027: thylakoid membrane organization | 1.42E-03 |
| 44 | GO:1901259: chloroplast rRNA processing | 1.64E-03 |
| 45 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.64E-03 |
| 46 | GO:0006694: steroid biosynthetic process | 1.64E-03 |
| 47 | GO:0009955: adaxial/abaxial pattern specification | 1.64E-03 |
| 48 | GO:0015995: chlorophyll biosynthetic process | 1.67E-03 |
| 49 | GO:0071555: cell wall organization | 1.70E-03 |
| 50 | GO:0006400: tRNA modification | 1.92E-03 |
| 51 | GO:0045995: regulation of embryonic development | 1.92E-03 |
| 52 | GO:0030497: fatty acid elongation | 1.92E-03 |
| 53 | GO:0010196: nonphotochemical quenching | 1.92E-03 |
| 54 | GO:0006875: cellular metal ion homeostasis | 2.22E-03 |
| 55 | GO:0007155: cell adhesion | 2.22E-03 |
| 56 | GO:0008610: lipid biosynthetic process | 2.22E-03 |
| 57 | GO:0009658: chloroplast organization | 2.53E-03 |
| 58 | GO:0019430: removal of superoxide radicals | 2.54E-03 |
| 59 | GO:0009808: lignin metabolic process | 2.54E-03 |
| 60 | GO:0071482: cellular response to light stimulus | 2.54E-03 |
| 61 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.21E-03 |
| 62 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.21E-03 |
| 63 | GO:0019538: protein metabolic process | 3.57E-03 |
| 64 | GO:0006535: cysteine biosynthetic process from serine | 3.57E-03 |
| 65 | GO:0006415: translational termination | 3.94E-03 |
| 66 | GO:0009073: aromatic amino acid family biosynthetic process | 3.94E-03 |
| 67 | GO:0043085: positive regulation of catalytic activity | 3.94E-03 |
| 68 | GO:0006352: DNA-templated transcription, initiation | 3.94E-03 |
| 69 | GO:0000038: very long-chain fatty acid metabolic process | 3.94E-03 |
| 70 | GO:0009773: photosynthetic electron transport in photosystem I | 3.94E-03 |
| 71 | GO:0045037: protein import into chloroplast stroma | 4.32E-03 |
| 72 | GO:0006869: lipid transport | 4.69E-03 |
| 73 | GO:0009767: photosynthetic electron transport chain | 4.71E-03 |
| 74 | GO:0006096: glycolytic process | 4.74E-03 |
| 75 | GO:0010143: cutin biosynthetic process | 5.12E-03 |
| 76 | GO:0090351: seedling development | 5.54E-03 |
| 77 | GO:0009969: xyloglucan biosynthetic process | 5.54E-03 |
| 78 | GO:0019344: cysteine biosynthetic process | 6.42E-03 |
| 79 | GO:0009116: nucleoside metabolic process | 6.42E-03 |
| 80 | GO:0009695: jasmonic acid biosynthetic process | 6.87E-03 |
| 81 | GO:0006418: tRNA aminoacylation for protein translation | 6.87E-03 |
| 82 | GO:0009294: DNA mediated transformation | 8.30E-03 |
| 83 | GO:0009411: response to UV | 8.30E-03 |
| 84 | GO:0040007: growth | 8.30E-03 |
| 85 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.30E-03 |
| 86 | GO:0016117: carotenoid biosynthetic process | 9.31E-03 |
| 87 | GO:0006412: translation | 1.03E-02 |
| 88 | GO:0048868: pollen tube development | 1.04E-02 |
| 89 | GO:0045489: pectin biosynthetic process | 1.04E-02 |
| 90 | GO:0009409: response to cold | 1.11E-02 |
| 91 | GO:0009416: response to light stimulus | 1.13E-02 |
| 92 | GO:0019252: starch biosynthetic process | 1.15E-02 |
| 93 | GO:0008654: phospholipid biosynthetic process | 1.15E-02 |
| 94 | GO:0016132: brassinosteroid biosynthetic process | 1.20E-02 |
| 95 | GO:0032502: developmental process | 1.26E-02 |
| 96 | GO:0055114: oxidation-reduction process | 1.37E-02 |
| 97 | GO:0046686: response to cadmium ion | 1.37E-02 |
| 98 | GO:0009828: plant-type cell wall loosening | 1.38E-02 |
| 99 | GO:0009826: unidimensional cell growth | 1.47E-02 |
| 100 | GO:0009911: positive regulation of flower development | 1.56E-02 |
| 101 | GO:0016126: sterol biosynthetic process | 1.56E-02 |
| 102 | GO:0048481: plant ovule development | 1.88E-02 |
| 103 | GO:0018298: protein-chromophore linkage | 1.88E-02 |
| 104 | GO:0009817: defense response to fungus, incompatible interaction | 1.88E-02 |
| 105 | GO:0009407: toxin catabolic process | 2.02E-02 |
| 106 | GO:0009834: plant-type secondary cell wall biogenesis | 2.02E-02 |
| 107 | GO:0007568: aging | 2.09E-02 |
| 108 | GO:0006839: mitochondrial transport | 2.44E-02 |
| 109 | GO:0006631: fatty acid metabolic process | 2.52E-02 |
| 110 | GO:0042542: response to hydrogen peroxide | 2.59E-02 |
| 111 | GO:0051707: response to other organism | 2.67E-02 |
| 112 | GO:0006629: lipid metabolic process | 2.81E-02 |
| 113 | GO:0009636: response to toxic substance | 2.90E-02 |
| 114 | GO:0008152: metabolic process | 3.09E-02 |
| 115 | GO:0009664: plant-type cell wall organization | 3.14E-02 |
| 116 | GO:0009585: red, far-red light phototransduction | 3.30E-02 |
| 117 | GO:0015031: protein transport | 3.70E-02 |
| 118 | GO:0048316: seed development | 3.80E-02 |
| 119 | GO:0009735: response to cytokinin | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 3 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 4 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 5 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 6 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 7 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 3.21E-07 |
| 9 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 7.51E-07 |
| 10 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.25E-05 |
| 11 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.22E-04 |
| 12 | GO:0008568: microtubule-severing ATPase activity | 1.22E-04 |
| 13 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.22E-04 |
| 14 | GO:0004321: fatty-acyl-CoA synthase activity | 1.22E-04 |
| 15 | GO:0015088: copper uptake transmembrane transporter activity | 1.22E-04 |
| 16 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 1.22E-04 |
| 17 | GO:0004560: alpha-L-fucosidase activity | 1.22E-04 |
| 18 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.22E-04 |
| 19 | GO:0004802: transketolase activity | 2.82E-04 |
| 20 | GO:0050017: L-3-cyanoalanine synthase activity | 2.82E-04 |
| 21 | GO:0004047: aminomethyltransferase activity | 2.82E-04 |
| 22 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.65E-04 |
| 23 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 4.65E-04 |
| 24 | GO:0004075: biotin carboxylase activity | 4.65E-04 |
| 25 | GO:0070330: aromatase activity | 4.65E-04 |
| 26 | GO:0002161: aminoacyl-tRNA editing activity | 4.65E-04 |
| 27 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.66E-04 |
| 28 | GO:0016149: translation release factor activity, codon specific | 6.66E-04 |
| 29 | GO:0004550: nucleoside diphosphate kinase activity | 6.66E-04 |
| 30 | GO:0003878: ATP citrate synthase activity | 6.66E-04 |
| 31 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.66E-04 |
| 32 | GO:0016740: transferase activity | 7.04E-04 |
| 33 | GO:0043495: protein anchor | 8.84E-04 |
| 34 | GO:0001053: plastid sigma factor activity | 8.84E-04 |
| 35 | GO:0004845: uracil phosphoribosyltransferase activity | 8.84E-04 |
| 36 | GO:0016836: hydro-lyase activity | 8.84E-04 |
| 37 | GO:0016987: sigma factor activity | 8.84E-04 |
| 38 | GO:0003924: GTPase activity | 1.01E-03 |
| 39 | GO:0018685: alkane 1-monooxygenase activity | 1.12E-03 |
| 40 | GO:0003989: acetyl-CoA carboxylase activity | 1.12E-03 |
| 41 | GO:0009922: fatty acid elongase activity | 1.12E-03 |
| 42 | GO:0005525: GTP binding | 1.18E-03 |
| 43 | GO:0005200: structural constituent of cytoskeleton | 1.27E-03 |
| 44 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.37E-03 |
| 45 | GO:0003735: structural constituent of ribosome | 1.56E-03 |
| 46 | GO:0051753: mannan synthase activity | 1.64E-03 |
| 47 | GO:0004849: uridine kinase activity | 1.64E-03 |
| 48 | GO:0004124: cysteine synthase activity | 1.64E-03 |
| 49 | GO:0019899: enzyme binding | 1.92E-03 |
| 50 | GO:0004620: phospholipase activity | 1.92E-03 |
| 51 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.13E-03 |
| 52 | GO:0004033: aldo-keto reductase (NADP) activity | 2.22E-03 |
| 53 | GO:0003747: translation release factor activity | 2.87E-03 |
| 54 | GO:0016207: 4-coumarate-CoA ligase activity | 2.87E-03 |
| 55 | GO:0005381: iron ion transmembrane transporter activity | 3.21E-03 |
| 56 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.23E-03 |
| 57 | GO:0008047: enzyme activator activity | 3.57E-03 |
| 58 | GO:0047372: acylglycerol lipase activity | 3.94E-03 |
| 59 | GO:0000049: tRNA binding | 4.32E-03 |
| 60 | GO:0008378: galactosyltransferase activity | 4.32E-03 |
| 61 | GO:0008266: poly(U) RNA binding | 5.12E-03 |
| 62 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.12E-03 |
| 63 | GO:0016746: transferase activity, transferring acyl groups | 5.87E-03 |
| 64 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 5.98E-03 |
| 65 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 5.98E-03 |
| 66 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 5.98E-03 |
| 67 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 7.34E-03 |
| 68 | GO:0008289: lipid binding | 8.28E-03 |
| 69 | GO:0022891: substrate-specific transmembrane transporter activity | 8.30E-03 |
| 70 | GO:0004812: aminoacyl-tRNA ligase activity | 9.31E-03 |
| 71 | GO:0050662: coenzyme binding | 1.09E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.09E-02 |
| 73 | GO:0042802: identical protein binding | 1.25E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.32E-02 |
| 75 | GO:0016791: phosphatase activity | 1.38E-02 |
| 76 | GO:0016759: cellulose synthase activity | 1.38E-02 |
| 77 | GO:0008483: transaminase activity | 1.44E-02 |
| 78 | GO:0016168: chlorophyll binding | 1.62E-02 |
| 79 | GO:0050660: flavin adenine dinucleotide binding | 1.77E-02 |
| 80 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.82E-02 |
| 81 | GO:0052689: carboxylic ester hydrolase activity | 2.10E-02 |
| 82 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.30E-02 |
| 83 | GO:0042803: protein homodimerization activity | 2.38E-02 |
| 84 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.44E-02 |
| 85 | GO:0004364: glutathione transferase activity | 2.59E-02 |
| 86 | GO:0005198: structural molecule activity | 2.90E-02 |
| 87 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.98E-02 |
| 88 | GO:0009055: electron carrier activity | 3.01E-02 |
| 89 | GO:0003824: catalytic activity | 3.08E-02 |
| 90 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.30E-02 |
| 91 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.80E-02 |
| 92 | GO:0016491: oxidoreductase activity | 3.86E-02 |
| 93 | GO:0004650: polygalacturonase activity | 3.98E-02 |
| 94 | GO:0016874: ligase activity | 4.06E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.38E-19 |
| 3 | GO:0009570: chloroplast stroma | 9.11E-18 |
| 4 | GO:0009941: chloroplast envelope | 9.58E-16 |
| 5 | GO:0009534: chloroplast thylakoid | 3.87E-10 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.41E-08 |
| 7 | GO:0009579: thylakoid | 1.03E-07 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.13E-04 |
| 9 | GO:0045298: tubulin complex | 1.20E-04 |
| 10 | GO:0009547: plastid ribosome | 1.22E-04 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.22E-04 |
| 12 | GO:0016020: membrane | 2.25E-04 |
| 13 | GO:0031977: thylakoid lumen | 2.90E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 3.00E-04 |
| 15 | GO:0042651: thylakoid membrane | 4.61E-04 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 4.61E-04 |
| 17 | GO:0009536: plastid | 6.02E-04 |
| 18 | GO:0009346: citrate lyase complex | 6.66E-04 |
| 19 | GO:0005960: glycine cleavage complex | 6.66E-04 |
| 20 | GO:0031897: Tic complex | 8.84E-04 |
| 21 | GO:0009523: photosystem II | 9.36E-04 |
| 22 | GO:0009512: cytochrome b6f complex | 1.12E-03 |
| 23 | GO:0005618: cell wall | 1.89E-03 |
| 24 | GO:0009533: chloroplast stromal thylakoid | 1.92E-03 |
| 25 | GO:0046658: anchored component of plasma membrane | 2.08E-03 |
| 26 | GO:0022626: cytosolic ribosome | 2.25E-03 |
| 27 | GO:0009505: plant-type cell wall | 2.53E-03 |
| 28 | GO:0009539: photosystem II reaction center | 2.54E-03 |
| 29 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.87E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 2.87E-03 |
| 31 | GO:0005874: microtubule | 3.18E-03 |
| 32 | GO:0005794: Golgi apparatus | 3.27E-03 |
| 33 | GO:0000311: plastid large ribosomal subunit | 4.32E-03 |
| 34 | GO:0031225: anchored component of membrane | 4.72E-03 |
| 35 | GO:0030659: cytoplasmic vesicle membrane | 5.12E-03 |
| 36 | GO:0030095: chloroplast photosystem II | 5.12E-03 |
| 37 | GO:0030176: integral component of endoplasmic reticulum membrane | 5.54E-03 |
| 38 | GO:0009706: chloroplast inner membrane | 5.71E-03 |
| 39 | GO:0043234: protein complex | 5.98E-03 |
| 40 | GO:0009532: plastid stroma | 7.34E-03 |
| 41 | GO:0015935: small ribosomal subunit | 7.34E-03 |
| 42 | GO:0005840: ribosome | 7.52E-03 |
| 43 | GO:0005773: vacuole | 1.07E-02 |
| 44 | GO:0000139: Golgi membrane | 1.11E-02 |
| 45 | GO:0019898: extrinsic component of membrane | 1.15E-02 |
| 46 | GO:0022627: cytosolic small ribosomal subunit | 1.31E-02 |
| 47 | GO:0048046: apoplast | 1.61E-02 |
| 48 | GO:0005774: vacuolar membrane | 4.44E-02 |
| 49 | GO:0005783: endoplasmic reticulum | 4.78E-02 |