Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G59690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016048: detection of temperature stimulus0.00E+00
2GO:0031508: pericentric heterochromatin assembly0.00E+00
3GO:0010424: DNA methylation on cytosine within a CG sequence5.83E-08
4GO:0042026: protein refolding4.23E-06
5GO:0006458: 'de novo' protein folding4.23E-06
6GO:0010216: maintenance of DNA methylation2.37E-05
7GO:0048438: floral whorl development2.88E-05
8GO:0061077: chaperone-mediated protein folding7.03E-05
9GO:0010069: zygote asymmetric cytokinesis in embryo sac7.28E-05
10GO:0090309: positive regulation of methylation-dependent chromatin silencing7.28E-05
11GO:0010220: positive regulation of vernalization response7.28E-05
12GO:0007005: mitochondrion organization7.80E-05
13GO:0009411: response to UV8.61E-05
14GO:0006556: S-adenosylmethionine biosynthetic process1.27E-04
15GO:0032776: DNA methylation on cytosine1.27E-04
16GO:0009765: photosynthesis, light harvesting2.57E-04
17GO:0000060: protein import into nucleus, translocation4.06E-04
18GO:0006555: methionine metabolic process4.06E-04
19GO:0010076: maintenance of floral meristem identity4.86E-04
20GO:0010077: maintenance of inflorescence meristem identity4.86E-04
21GO:0006826: iron ion transport5.68E-04
22GO:0051510: regulation of unidimensional cell growth5.68E-04
23GO:0006880: intracellular sequestering of iron ion5.68E-04
24GO:0052543: callose deposition in cell wall6.55E-04
25GO:0048193: Golgi vesicle transport7.44E-04
26GO:0044030: regulation of DNA methylation7.44E-04
27GO:0022900: electron transport chain7.44E-04
28GO:0009821: alkaloid biosynthetic process8.35E-04
29GO:0016569: covalent chromatin modification8.59E-04
30GO:0006349: regulation of gene expression by genetic imprinting9.29E-04
31GO:0006325: chromatin organization1.03E-03
32GO:0009698: phenylpropanoid metabolic process1.13E-03
33GO:0006879: cellular iron ion homeostasis1.13E-03
34GO:0009058: biosynthetic process1.18E-03
35GO:0010582: floral meristem determinacy1.23E-03
36GO:0010039: response to iron ion1.56E-03
37GO:0009768: photosynthesis, light harvesting in photosystem I1.92E-03
38GO:0006334: nucleosome assembly2.04E-03
39GO:0006730: one-carbon metabolic process2.17E-03
40GO:0009294: DNA mediated transformation2.30E-03
41GO:0019722: calcium-mediated signaling2.43E-03
42GO:0010584: pollen exine formation2.43E-03
43GO:0071555: cell wall organization2.49E-03
44GO:0000271: polysaccharide biosynthetic process2.70E-03
45GO:0045489: pectin biosynthetic process2.84E-03
46GO:0006342: chromatin silencing2.84E-03
47GO:0009741: response to brassinosteroid2.84E-03
48GO:0080167: response to karrikin2.89E-03
49GO:0009791: post-embryonic development3.13E-03
50GO:0055072: iron ion homeostasis3.13E-03
51GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.28E-03
52GO:0000302: response to reactive oxygen species3.28E-03
53GO:0015979: photosynthesis3.29E-03
54GO:0007267: cell-cell signaling3.89E-03
55GO:0018298: protein-chromophore linkage5.05E-03
56GO:0010218: response to far red light5.40E-03
57GO:0009910: negative regulation of flower development5.58E-03
58GO:0016051: carbohydrate biosynthetic process5.94E-03
59GO:0009637: response to blue light5.94E-03
60GO:0009908: flower development6.79E-03
61GO:0010114: response to red light7.08E-03
62GO:0000165: MAPK cascade8.09E-03
63GO:0009809: lignin biosynthetic process8.71E-03
64GO:0009742: brassinosteroid mediated signaling pathway1.16E-02
65GO:0009790: embryo development1.46E-02
66GO:0009739: response to gibberellin1.78E-02
67GO:0010468: regulation of gene expression1.86E-02
68GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.12E-02
69GO:0009826: unidimensional cell growth2.18E-02
70GO:0009658: chloroplast organization2.24E-02
71GO:0006970: response to osmotic stress2.36E-02
72GO:0048366: leaf development2.52E-02
73GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.67E-02
74GO:0046777: protein autophosphorylation2.74E-02
75GO:0045892: negative regulation of transcription, DNA-templated3.00E-02
76GO:0016042: lipid catabolic process3.38E-02
77GO:0008152: metabolic process3.70E-02
RankGO TermAdjusted P value
1GO:0046982: protein heterodimerization activity1.22E-05
2GO:0044183: protein binding involved in protein folding2.37E-05
3GO:0010428: methyl-CpNpG binding1.27E-04
4GO:0010429: methyl-CpNpN binding1.27E-04
5GO:0004478: methionine adenosyltransferase activity1.27E-04
6GO:0008199: ferric iron binding1.89E-04
7GO:0001872: (1->3)-beta-D-glucan binding1.89E-04
8GO:0004322: ferroxidase activity1.89E-04
9GO:0010385: double-stranded methylated DNA binding2.57E-04
10GO:0046527: glucosyltransferase activity2.57E-04
11GO:0004784: superoxide dismutase activity4.06E-04
12GO:0042393: histone binding4.32E-04
13GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.86E-04
14GO:0016207: 4-coumarate-CoA ligase activity8.35E-04
15GO:0051082: unfolded protein binding9.08E-04
16GO:0016844: strictosidine synthase activity9.29E-04
17GO:0008327: methyl-CpG binding1.13E-03
18GO:0003677: DNA binding1.31E-03
19GO:0031409: pigment binding1.67E-03
20GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.17E-03
21GO:0016788: hydrolase activity, acting on ester bonds2.38E-03
22GO:0003682: chromatin binding2.47E-03
23GO:0016759: cellulose synthase activity3.73E-03
24GO:0008483: transaminase activity3.89E-03
25GO:0016722: oxidoreductase activity, oxidizing metal ions3.89E-03
26GO:0016168: chlorophyll binding4.37E-03
27GO:0030247: polysaccharide binding4.71E-03
28GO:0051537: 2 iron, 2 sulfur cluster binding7.48E-03
29GO:0004650: polygalacturonase activity1.05E-02
30GO:0016874: ligase activity1.07E-02
31GO:0016758: transferase activity, transferring hexosyl groups1.28E-02
32GO:0016829: lyase activity1.38E-02
33GO:0030170: pyridoxal phosphate binding1.41E-02
34GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.43E-02
35GO:0008168: methyltransferase activity2.18E-02
36GO:0004672: protein kinase activity2.24E-02
37GO:0061630: ubiquitin protein ligase activity2.71E-02
38GO:0052689: carboxylic ester hydrolase activity2.80E-02
39GO:0004871: signal transducer activity3.07E-02
40GO:0042803: protein homodimerization activity3.07E-02
41GO:0005515: protein binding3.57E-02
42GO:0009055: electron carrier activity3.62E-02
43GO:0005524: ATP binding4.94E-02
RankGO TermAdjusted P value
1GO:0000788: nuclear nucleosome0.00E+00
2GO:0000786: nucleosome1.80E-07
3GO:0010369: chromocenter4.86E-04
4GO:0042644: chloroplast nucleoid8.35E-04
5GO:0005720: nuclear heterochromatin8.35E-04
6GO:0005730: nucleolus8.65E-04
7GO:0009579: thylakoid1.28E-03
8GO:0030076: light-harvesting complex1.56E-03
9GO:0000790: nuclear chromatin2.57E-03
10GO:0009522: photosystem I2.99E-03
11GO:0009523: photosystem II3.13E-03
12GO:0009505: plant-type cell wall3.31E-03
13GO:0009295: nucleoid3.89E-03
14GO:0009941: chloroplast envelope4.03E-03
15GO:0009506: plasmodesma5.37E-03
16GO:0009570: chloroplast stroma6.68E-03
17GO:0022626: cytosolic ribosome7.19E-03
18GO:0009534: chloroplast thylakoid9.07E-03
19GO:0031225: anchored component of membrane1.17E-02
20GO:0010287: plastoglobule1.26E-02
21GO:0046658: anchored component of plasma membrane2.00E-02
22GO:0000139: Golgi membrane2.07E-02
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Gene type



Gene DE type