Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G59530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006182: cGMP biosynthetic process0.00E+00
2GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
3GO:0010055: atrichoblast differentiation0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0046109: uridine biosynthetic process0.00E+00
8GO:0080053: response to phenylalanine0.00E+00
9GO:0006793: phosphorus metabolic process0.00E+00
10GO:0051238: sequestering of metal ion0.00E+00
11GO:0009620: response to fungus3.59E-06
12GO:0009617: response to bacterium3.59E-05
13GO:0009817: defense response to fungus, incompatible interaction6.99E-05
14GO:0006874: cellular calcium ion homeostasis9.96E-05
15GO:0050832: defense response to fungus1.67E-04
16GO:0032491: detection of molecule of fungal origin2.68E-04
17GO:0032107: regulation of response to nutrient levels2.68E-04
18GO:0051938: L-glutamate import2.68E-04
19GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.68E-04
20GO:0010726: positive regulation of hydrogen peroxide metabolic process2.68E-04
21GO:0010421: hydrogen peroxide-mediated programmed cell death2.68E-04
22GO:0006562: proline catabolic process2.68E-04
23GO:0009751: response to salicylic acid2.77E-04
24GO:0010204: defense response signaling pathway, resistance gene-independent3.14E-04
25GO:0006468: protein phosphorylation5.10E-04
26GO:0043091: L-arginine import5.89E-04
27GO:0051592: response to calcium ion5.89E-04
28GO:0080183: response to photooxidative stress5.89E-04
29GO:0010133: proline catabolic process to glutamate5.89E-04
30GO:0015802: basic amino acid transport5.89E-04
31GO:0009805: coumarin biosynthetic process5.89E-04
32GO:0009866: induced systemic resistance, ethylene mediated signaling pathway5.89E-04
33GO:0002240: response to molecule of oomycetes origin5.89E-04
34GO:0044419: interspecies interaction between organisms5.89E-04
35GO:0042939: tripeptide transport5.89E-04
36GO:0010200: response to chitin6.94E-04
37GO:0009407: toxin catabolic process8.02E-04
38GO:0010351: lithium ion transport9.55E-04
39GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.55E-04
40GO:0006556: S-adenosylmethionine biosynthetic process9.55E-04
41GO:0034051: negative regulation of plant-type hypersensitive response9.55E-04
42GO:0042742: defense response to bacterium1.10E-03
43GO:0010150: leaf senescence1.13E-03
44GO:0006882: cellular zinc ion homeostasis1.36E-03
45GO:0046836: glycolipid transport1.36E-03
46GO:0033169: histone H3-K9 demethylation1.36E-03
47GO:0070301: cellular response to hydrogen peroxide1.36E-03
48GO:0006537: glutamate biosynthetic process1.36E-03
49GO:0009052: pentose-phosphate shunt, non-oxidative branch1.36E-03
50GO:0016998: cell wall macromolecule catabolic process1.46E-03
51GO:0009636: response to toxic substance1.51E-03
52GO:0071456: cellular response to hypoxia1.60E-03
53GO:0042938: dipeptide transport1.83E-03
54GO:0045227: capsule polysaccharide biosynthetic process1.83E-03
55GO:0006536: glutamate metabolic process1.83E-03
56GO:0033358: UDP-L-arabinose biosynthetic process1.83E-03
57GO:1901002: positive regulation of response to salt stress1.83E-03
58GO:0034052: positive regulation of plant-type hypersensitive response2.33E-03
59GO:0002238: response to molecule of fungal origin2.88E-03
60GO:0006561: proline biosynthetic process2.88E-03
61GO:0010942: positive regulation of cell death2.88E-03
62GO:0015691: cadmium ion transport2.88E-03
63GO:0010256: endomembrane system organization2.88E-03
64GO:0071470: cellular response to osmotic stress3.46E-03
65GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.46E-03
66GO:0045926: negative regulation of growth3.46E-03
67GO:0009611: response to wounding3.68E-03
68GO:0051607: defense response to virus4.01E-03
69GO:0080027: response to herbivore4.08E-03
70GO:1900056: negative regulation of leaf senescence4.08E-03
71GO:0050829: defense response to Gram-negative bacterium4.08E-03
72GO:0030026: cellular manganese ion homeostasis4.08E-03
73GO:1900057: positive regulation of leaf senescence4.08E-03
74GO:0000122: negative regulation of transcription from RNA polymerase II promoter4.08E-03
75GO:0009615: response to virus4.25E-03
76GO:0010928: regulation of auxin mediated signaling pathway4.73E-03
77GO:0009627: systemic acquired resistance4.74E-03
78GO:0009699: phenylpropanoid biosynthetic process5.42E-03
79GO:0010120: camalexin biosynthetic process5.42E-03
80GO:0008219: cell death5.54E-03
81GO:0009753: response to jasmonic acid6.12E-03
82GO:0010112: regulation of systemic acquired resistance6.14E-03
83GO:0009821: alkaloid biosynthetic process6.14E-03
84GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.90E-03
85GO:0007166: cell surface receptor signaling pathway7.09E-03
86GO:0006952: defense response7.56E-03
87GO:0009688: abscisic acid biosynthetic process7.68E-03
88GO:0010162: seed dormancy process7.68E-03
89GO:0055062: phosphate ion homeostasis7.68E-03
90GO:0007064: mitotic sister chromatid cohesion7.68E-03
91GO:0009870: defense response signaling pathway, resistance gene-dependent7.68E-03
92GO:0006032: chitin catabolic process7.68E-03
93GO:0009682: induced systemic resistance8.50E-03
94GO:0009089: lysine biosynthetic process via diaminopimelate8.50E-03
95GO:0051707: response to other organism9.06E-03
96GO:0006790: sulfur compound metabolic process9.35E-03
97GO:0002213: defense response to insect9.35E-03
98GO:2000028: regulation of photoperiodism, flowering1.02E-02
99GO:0055046: microgametogenesis1.02E-02
100GO:0009718: anthocyanin-containing compound biosynthetic process1.02E-02
101GO:0006855: drug transmembrane transport1.06E-02
102GO:0002237: response to molecule of bacterial origin1.11E-02
103GO:0006812: cation transport1.14E-02
104GO:0042538: hyperosmotic salinity response1.14E-02
105GO:0070588: calcium ion transmembrane transport1.21E-02
106GO:0046854: phosphatidylinositol phosphorylation1.21E-02
107GO:0009969: xyloglucan biosynthetic process1.21E-02
108GO:0009225: nucleotide-sugar metabolic process1.21E-02
109GO:0009809: lignin biosynthetic process1.22E-02
110GO:0006979: response to oxidative stress1.23E-02
111GO:0009723: response to ethylene1.26E-02
112GO:0080167: response to karrikin1.37E-02
113GO:0005992: trehalose biosynthetic process1.40E-02
114GO:0030150: protein import into mitochondrial matrix1.40E-02
115GO:0009626: plant-type hypersensitive response1.54E-02
116GO:0007165: signal transduction1.55E-02
117GO:0003333: amino acid transmembrane transport1.61E-02
118GO:0019748: secondary metabolic process1.71E-02
119GO:0006730: one-carbon metabolic process1.71E-02
120GO:0009814: defense response, incompatible interaction1.71E-02
121GO:0010227: floral organ abscission1.82E-02
122GO:0006012: galactose metabolic process1.82E-02
123GO:0009693: ethylene biosynthetic process1.82E-02
124GO:0009561: megagametogenesis1.94E-02
125GO:0032259: methylation2.13E-02
126GO:0016042: lipid catabolic process2.17E-02
127GO:0042391: regulation of membrane potential2.17E-02
128GO:0006885: regulation of pH2.29E-02
129GO:0006520: cellular amino acid metabolic process2.29E-02
130GO:0009058: biosynthetic process2.31E-02
131GO:0006814: sodium ion transport2.41E-02
132GO:0042744: hydrogen peroxide catabolic process2.49E-02
133GO:0006623: protein targeting to vacuole2.53E-02
134GO:0002229: defense response to oomycetes2.65E-02
135GO:0010193: response to ozone2.65E-02
136GO:0071281: cellular response to iron ion2.91E-02
137GO:0010252: auxin homeostasis3.04E-02
138GO:0009607: response to biotic stimulus3.59E-02
139GO:0009816: defense response to bacterium, incompatible interaction3.59E-02
140GO:0055114: oxidation-reduction process3.87E-02
141GO:0006950: response to stress3.88E-02
142GO:0030244: cellulose biosynthetic process4.17E-02
143GO:0009832: plant-type cell wall biogenesis4.32E-02
144GO:0007568: aging4.62E-02
145GO:0048527: lateral root development4.62E-02
146GO:0045087: innate immune response4.93E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0016301: kinase activity3.00E-05
3GO:0005496: steroid binding7.68E-05
4GO:0016614: oxidoreductase activity, acting on CH-OH group of donors9.15E-05
5GO:0010285: L,L-diaminopimelate aminotransferase activity2.68E-04
6GO:0031127: alpha-(1,2)-fucosyltransferase activity2.68E-04
7GO:0004657: proline dehydrogenase activity2.68E-04
8GO:0004674: protein serine/threonine kinase activity2.99E-04
9GO:0008171: O-methyltransferase activity5.26E-04
10GO:0005524: ATP binding5.49E-04
11GO:0050660: flavin adenine dinucleotide binding5.77E-04
12GO:0032454: histone demethylase activity (H3-K9 specific)5.89E-04
13GO:0004103: choline kinase activity5.89E-04
14GO:0042937: tripeptide transporter activity5.89E-04
15GO:0004751: ribose-5-phosphate isomerase activity9.55E-04
16GO:0004383: guanylate cyclase activity9.55E-04
17GO:0004478: methionine adenosyltransferase activity9.55E-04
18GO:0042409: caffeoyl-CoA O-methyltransferase activity9.55E-04
19GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity9.55E-04
20GO:0005217: intracellular ligand-gated ion channel activity9.87E-04
21GO:0004970: ionotropic glutamate receptor activity9.87E-04
22GO:0004364: glutathione transferase activity1.24E-03
23GO:0004351: glutamate decarboxylase activity1.36E-03
24GO:0015189: L-lysine transmembrane transporter activity1.36E-03
25GO:0017089: glycolipid transporter activity1.36E-03
26GO:0015181: arginine transmembrane transporter activity1.36E-03
27GO:0009055: electron carrier activity1.46E-03
28GO:0010279: indole-3-acetic acid amido synthetase activity1.83E-03
29GO:0009916: alternative oxidase activity1.83E-03
30GO:0015368: calcium:cation antiporter activity1.83E-03
31GO:0050373: UDP-arabinose 4-epimerase activity1.83E-03
32GO:0042936: dipeptide transporter activity1.83E-03
33GO:0051861: glycolipid binding1.83E-03
34GO:0015369: calcium:proton antiporter activity1.83E-03
35GO:0005313: L-glutamate transmembrane transporter activity1.83E-03
36GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.33E-03
37GO:0045735: nutrient reservoir activity2.36E-03
38GO:0004866: endopeptidase inhibitor activity2.88E-03
39GO:0047714: galactolipase activity2.88E-03
40GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.46E-03
41GO:0102391: decanoate--CoA ligase activity3.46E-03
42GO:0003978: UDP-glucose 4-epimerase activity3.46E-03
43GO:0008483: transaminase activity3.78E-03
44GO:0005085: guanyl-nucleotide exchange factor activity4.08E-03
45GO:0004467: long-chain fatty acid-CoA ligase activity4.08E-03
46GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.08E-03
47GO:0030170: pyridoxal phosphate binding4.53E-03
48GO:0015491: cation:cation antiporter activity4.73E-03
49GO:0004714: transmembrane receptor protein tyrosine kinase activity4.73E-03
50GO:0008970: phosphatidylcholine 1-acylhydrolase activity5.42E-03
51GO:0015238: drug transmembrane transporter activity5.82E-03
52GO:0008417: fucosyltransferase activity6.14E-03
53GO:0030145: manganese ion binding6.40E-03
54GO:0031490: chromatin DNA binding6.90E-03
55GO:0016844: strictosidine synthase activity6.90E-03
56GO:0015174: basic amino acid transmembrane transporter activity6.90E-03
57GO:0005516: calmodulin binding7.23E-03
58GO:0004568: chitinase activity7.68E-03
59GO:0000976: transcription regulatory region sequence-specific DNA binding9.35E-03
60GO:0005388: calcium-transporting ATPase activity1.02E-02
61GO:0015266: protein channel activity1.02E-02
62GO:0004022: alcohol dehydrogenase (NAD) activity1.02E-02
63GO:0030552: cAMP binding1.21E-02
64GO:0004867: serine-type endopeptidase inhibitor activity1.21E-02
65GO:0030553: cGMP binding1.21E-02
66GO:0001046: core promoter sequence-specific DNA binding1.40E-02
67GO:0005216: ion channel activity1.50E-02
68GO:0052689: carboxylic ester hydrolase activity1.56E-02
69GO:0015035: protein disulfide oxidoreductase activity1.80E-02
70GO:0004499: N,N-dimethylaniline monooxygenase activity1.94E-02
71GO:0030246: carbohydrate binding2.05E-02
72GO:0005451: monovalent cation:proton antiporter activity2.17E-02
73GO:0005249: voltage-gated potassium channel activity2.17E-02
74GO:0030551: cyclic nucleotide binding2.17E-02
75GO:0015299: solute:proton antiporter activity2.41E-02
76GO:0019901: protein kinase binding2.53E-02
77GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.82E-02
78GO:0015297: antiporter activity2.88E-02
79GO:0015385: sodium:proton antiporter activity2.91E-02
80GO:0051213: dioxygenase activity3.45E-02
81GO:0044212: transcription regulatory region DNA binding3.73E-02
82GO:0004806: triglyceride lipase activity3.88E-02
83GO:0030247: polysaccharide binding3.88E-02
84GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.17E-02
85GO:0004601: peroxidase activity4.66E-02
86GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.93E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.51E-05
2GO:0005886: plasma membrane8.65E-05
3GO:0005770: late endosome2.39E-03
4GO:0032588: trans-Golgi network membrane2.88E-03
5GO:0005576: extracellular region3.21E-03
6GO:0032580: Golgi cisterna membrane3.56E-03
7GO:0031305: integral component of mitochondrial inner membrane4.73E-03
8GO:0070469: respiratory chain1.50E-02
9GO:0005744: mitochondrial inner membrane presequence translocase complex1.94E-02
10GO:0000785: chromatin2.78E-02
11GO:0071944: cell periphery2.91E-02
12GO:0009705: plant-type vacuole membrane3.02E-02
13GO:0048046: apoplast4.37E-02
14GO:0000325: plant-type vacuole4.62E-02
<
Gene type



Gene DE type