co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0010360: negative regulation of anion channel activity	0.00E+00
3	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
4	GO:0032497: detection of lipopolysaccharide	0.00E+00
5	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0000188: inactivation of MAPK activity	0.00E+00
9	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
10	GO:0009991: response to extracellular stimulus	0.00E+00
11	GO:0000266: mitochondrial fission	1.83E-05
12	GO:0046777: protein autophosphorylation	5.35E-05
13	GO:0006014: D-ribose metabolic process	7.23E-05
14	GO:0006468: protein phosphorylation	1.15E-04
15	GO:0016559: peroxisome fission	1.70E-04
16	GO:0006481: C-terminal protein methylation	2.04E-04
17	GO:0035344: hypoxanthine transport	2.04E-04
18	GO:1902361: mitochondrial pyruvate transmembrane transport	2.04E-04
19	GO:1902065: response to L-glutamate	2.04E-04
20	GO:0010265: SCF complex assembly	2.04E-04
21	GO:0098721: uracil import across plasma membrane	2.04E-04
22	GO:0098702: adenine import across plasma membrane	2.04E-04
23	GO:0035266: meristem growth	2.04E-04
24	GO:0098710: guanine import across plasma membrane	2.04E-04
25	GO:0048363: mucilage pectin metabolic process	2.04E-04
26	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.04E-04
27	GO:0007292: female gamete generation	2.04E-04
28	GO:0030968: endoplasmic reticulum unfolded protein response	2.11E-04
29	GO:0046686: response to cadmium ion	3.52E-04
30	GO:0043069: negative regulation of programmed cell death	3.60E-04
31	GO:0006212: uracil catabolic process	4.57E-04
32	GO:0009727: detection of ethylene stimulus	4.57E-04
33	GO:0007584: response to nutrient	4.57E-04
34	GO:0051788: response to misfolded protein	4.57E-04
35	GO:0043066: negative regulation of apoptotic process	4.57E-04
36	GO:0019483: beta-alanine biosynthetic process	4.57E-04
37	GO:0006850: mitochondrial pyruvate transport	4.57E-04
38	GO:0015865: purine nucleotide transport	4.57E-04
39	GO:0042325: regulation of phosphorylation	4.57E-04
40	GO:0019441: tryptophan catabolic process to kynurenine	4.57E-04
41	GO:0050684: regulation of mRNA processing	4.57E-04
42	GO:0050994: regulation of lipid catabolic process	4.57E-04
43	GO:0010311: lateral root formation	4.64E-04
44	GO:0045087: innate immune response	5.89E-04
45	GO:0032784: regulation of DNA-templated transcription, elongation	7.44E-04
46	GO:0010359: regulation of anion channel activity	7.44E-04
47	GO:0060968: regulation of gene silencing	7.44E-04
48	GO:0009399: nitrogen fixation	1.06E-03
49	GO:0080001: mucilage extrusion from seed coat	1.06E-03
50	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.06E-03
51	GO:0034219: carbohydrate transmembrane transport	1.06E-03
52	GO:2001289: lipid X metabolic process	1.06E-03
53	GO:0070301: cellular response to hydrogen peroxide	1.06E-03
54	GO:0046902: regulation of mitochondrial membrane permeability	1.06E-03
55	GO:0072334: UDP-galactose transmembrane transport	1.06E-03
56	GO:0022622: root system development	1.41E-03
57	GO:0010107: potassium ion import	1.41E-03
58	GO:0042991: transcription factor import into nucleus	1.41E-03
59	GO:0006542: glutamine biosynthetic process	1.41E-03
60	GO:0010222: stem vascular tissue pattern formation	1.41E-03
61	GO:0048367: shoot system development	1.50E-03
62	GO:0006090: pyruvate metabolic process	1.80E-03
63	GO:0005513: detection of calcium ion	1.80E-03
64	GO:0007029: endoplasmic reticulum organization	1.80E-03
65	GO:0010225: response to UV-C	1.80E-03
66	GO:0019252: starch biosynthetic process	1.88E-03
67	GO:1902456: regulation of stomatal opening	2.21E-03
68	GO:1900425: negative regulation of defense response to bacterium	2.21E-03
69	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.21E-03
70	GO:0048827: phyllome development	2.21E-03
71	GO:0048232: male gamete generation	2.21E-03
72	GO:0043248: proteasome assembly	2.21E-03
73	GO:0048280: vesicle fusion with Golgi apparatus	2.66E-03
74	GO:0098655: cation transmembrane transport	2.66E-03
75	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.66E-03
76	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.05E-03
77	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.13E-03
78	GO:1902074: response to salt	3.13E-03
79	GO:0048364: root development	3.24E-03
80	GO:1900150: regulation of defense response to fungus	3.63E-03
81	GO:0010078: maintenance of root meristem identity	3.63E-03
82	GO:2000070: regulation of response to water deprivation	3.63E-03
83	GO:0010150: leaf senescence	3.65E-03
84	GO:0009827: plant-type cell wall modification	4.15E-03
85	GO:0043562: cellular response to nitrogen levels	4.15E-03
86	GO:0009808: lignin metabolic process	4.15E-03
87	GO:0007338: single fertilization	4.70E-03
88	GO:0009051: pentose-phosphate shunt, oxidative branch	4.70E-03
89	GO:0009867: jasmonic acid mediated signaling pathway	4.76E-03
90	GO:2000280: regulation of root development	5.27E-03
91	GO:0010449: root meristem growth	5.27E-03
92	GO:0008202: steroid metabolic process	5.27E-03
93	GO:0006896: Golgi to vacuole transport	5.86E-03
94	GO:0007064: mitotic sister chromatid cohesion	5.86E-03
95	GO:0048829: root cap development	5.86E-03
96	GO:0010629: negative regulation of gene expression	5.86E-03
97	GO:0072593: reactive oxygen species metabolic process	6.48E-03
98	GO:0015770: sucrose transport	6.48E-03
99	GO:0030148: sphingolipid biosynthetic process	6.48E-03
100	GO:0010015: root morphogenesis	6.48E-03
101	GO:0000038: very long-chain fatty acid metabolic process	6.48E-03
102	GO:0006970: response to osmotic stress	6.98E-03
103	GO:0071365: cellular response to auxin stimulus	7.12E-03
104	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.43E-03
105	GO:0009737: response to abscisic acid	7.58E-03
106	GO:0006626: protein targeting to mitochondrion	7.78E-03
107	GO:0006108: malate metabolic process	7.78E-03
108	GO:0035556: intracellular signal transduction	7.89E-03
109	GO:0009933: meristem structural organization	8.47E-03
110	GO:0009887: animal organ morphogenesis	8.47E-03
111	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.72E-03
112	GO:0016192: vesicle-mediated transport	8.91E-03
113	GO:0010167: response to nitrate	9.17E-03
114	GO:0005985: sucrose metabolic process	9.17E-03
115	GO:0090351: seedling development	9.17E-03
116	GO:0006096: glycolytic process	9.79E-03
117	GO:0006833: water transport	9.90E-03
118	GO:0055085: transmembrane transport	1.04E-02
119	GO:0015992: proton transport	1.22E-02
120	GO:0051260: protein homooligomerization	1.22E-02
121	GO:0009742: brassinosteroid mediated signaling pathway	1.25E-02
122	GO:0030433: ubiquitin-dependent ERAD pathway	1.30E-02
123	GO:0007005: mitochondrion organization	1.30E-02
124	GO:0071369: cellular response to ethylene stimulus	1.38E-02
125	GO:0006012: galactose metabolic process	1.38E-02
126	GO:0019722: calcium-mediated signaling	1.47E-02
127	GO:0042147: retrograde transport, endosome to Golgi	1.55E-02
128	GO:0042391: regulation of membrane potential	1.64E-02
129	GO:0034220: ion transmembrane transport	1.64E-02
130	GO:0010087: phloem or xylem histogenesis	1.64E-02
131	GO:0010118: stomatal movement	1.64E-02
132	GO:0010154: fruit development	1.73E-02
133	GO:0046323: glucose import	1.73E-02
134	GO:0048544: recognition of pollen	1.82E-02
135	GO:0042752: regulation of circadian rhythm	1.82E-02
136	GO:0009651: response to salt stress	1.82E-02
137	GO:0006633: fatty acid biosynthetic process	1.86E-02
138	GO:0006623: protein targeting to vacuole	1.92E-02
139	GO:0048825: cotyledon development	1.92E-02
140	GO:0009749: response to glucose	1.92E-02
141	GO:0071554: cell wall organization or biogenesis	2.01E-02
142	GO:0006891: intra-Golgi vesicle-mediated transport	2.01E-02
143	GO:0006635: fatty acid beta-oxidation	2.01E-02
144	GO:0009414: response to water deprivation	2.03E-02
145	GO:0010583: response to cyclopentenone	2.11E-02
146	GO:0009630: gravitropism	2.11E-02
147	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.29E-02
148	GO:0009567: double fertilization forming a zygote and endosperm	2.30E-02
149	GO:0006470: protein dephosphorylation	2.34E-02
150	GO:0007166: cell surface receptor signaling pathway	2.34E-02
151	GO:0009738: abscisic acid-activated signaling pathway	2.71E-02
152	GO:0010029: regulation of seed germination	2.72E-02
153	GO:0009816: defense response to bacterium, incompatible interaction	2.72E-02
154	GO:0042128: nitrate assimilation	2.83E-02
155	GO:0016310: phosphorylation	2.86E-02
156	GO:0006888: ER to Golgi vesicle-mediated transport	2.94E-02
157	GO:0006950: response to stress	2.94E-02
158	GO:0009826: unidimensional cell growth	3.05E-02
159	GO:0009817: defense response to fungus, incompatible interaction	3.16E-02
160	GO:0006499: N-terminal protein myristoylation	3.38E-02
161	GO:0009407: toxin catabolic process	3.38E-02
162	GO:0048527: lateral root development	3.50E-02
163	GO:0010119: regulation of stomatal movement	3.50E-02
164	GO:0009631: cold acclimation	3.50E-02
165	GO:0007049: cell cycle	3.53E-02
166	GO:0048366: leaf development	3.72E-02
167	GO:0016051: carbohydrate biosynthetic process	3.74E-02
168	GO:0009853: photorespiration	3.74E-02
169	GO:0006099: tricarboxylic acid cycle	3.86E-02
170	GO:0080167: response to karrikin	3.92E-02
171	GO:0006839: mitochondrial transport	4.10E-02
172	GO:0006511: ubiquitin-dependent protein catabolic process	4.12E-02
173	GO:0006631: fatty acid metabolic process	4.22E-02
174	GO:0006897: endocytosis	4.22E-02
175	GO:0000209: protein polyubiquitination	4.60E-02
176	GO:0009636: response to toxic substance	4.86E-02
177	GO:0009965: leaf morphogenesis	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity	0.00E+00
2	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
3	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
4	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
5	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
6	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
7	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
8	GO:0016301: kinase activity	1.72E-08
9	GO:0004674: protein serine/threonine kinase activity	4.97E-07
10	GO:0005524: ATP binding	1.50E-06
11	GO:0004747: ribokinase activity	1.00E-04
12	GO:0008865: fructokinase activity	1.70E-04
13	GO:0015208: guanine transmembrane transporter activity	2.04E-04
14	GO:0015294: solute:cation symporter activity	2.04E-04
15	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.04E-04
16	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.04E-04
17	GO:0015207: adenine transmembrane transporter activity	2.04E-04
18	GO:0015168: glycerol transmembrane transporter activity	2.04E-04
19	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.04E-04
20	GO:0030955: potassium ion binding	3.06E-04
21	GO:0004743: pyruvate kinase activity	3.06E-04
22	GO:0032934: sterol binding	4.57E-04
23	GO:0045140: inositol phosphoceramide synthase activity	4.57E-04
24	GO:0004061: arylformamidase activity	4.57E-04
25	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.57E-04
26	GO:0015036: disulfide oxidoreductase activity	4.57E-04
27	GO:0004566: beta-glucuronidase activity	4.57E-04
28	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.44E-04
29	GO:0050833: pyruvate transmembrane transporter activity	7.44E-04
30	GO:0016805: dipeptidase activity	7.44E-04
31	GO:0016595: glutamate binding	7.44E-04
32	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.44E-04
33	GO:0004108: citrate (Si)-synthase activity	1.06E-03
34	GO:0005354: galactose transmembrane transporter activity	1.06E-03
35	GO:0015210: uracil transmembrane transporter activity	1.41E-03
36	GO:0004470: malic enzyme activity	1.41E-03
37	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.41E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.41E-03
39	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.41E-03
40	GO:0010181: FMN binding	1.75E-03
41	GO:0008948: oxaloacetate decarboxylase activity	1.80E-03
42	GO:0004040: amidase activity	1.80E-03
43	GO:0005496: steroid binding	1.80E-03
44	GO:0005471: ATP:ADP antiporter activity	1.80E-03
45	GO:0004356: glutamate-ammonia ligase activity	1.80E-03
46	GO:0005459: UDP-galactose transmembrane transporter activity	1.80E-03
47	GO:0015145: monosaccharide transmembrane transporter activity	1.80E-03
48	GO:0036402: proteasome-activating ATPase activity	2.21E-03
49	GO:0004709: MAP kinase kinase kinase activity	2.21E-03
50	GO:0102391: decanoate--CoA ligase activity	2.66E-03
51	GO:0019900: kinase binding	2.66E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	3.13E-03
53	GO:0008506: sucrose:proton symporter activity	3.13E-03
54	GO:0008235: metalloexopeptidase activity	3.13E-03
55	GO:0004034: aldose 1-epimerase activity	3.63E-03
56	GO:0008142: oxysterol binding	4.15E-03
57	GO:0005267: potassium channel activity	4.15E-03
58	GO:0071949: FAD binding	4.70E-03
59	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.70E-03
60	GO:0004713: protein tyrosine kinase activity	5.86E-03
61	GO:0008171: O-methyltransferase activity	5.86E-03
62	GO:0004364: glutathione transferase activity	5.89E-03
63	GO:0008794: arsenate reductase (glutaredoxin) activity	6.48E-03
64	GO:0004177: aminopeptidase activity	6.48E-03
65	GO:0008559: xenobiotic-transporting ATPase activity	6.48E-03
66	GO:0047372: acylglycerol lipase activity	6.48E-03
67	GO:0004521: endoribonuclease activity	7.12E-03
68	GO:0004022: alcohol dehydrogenase (NAD) activity	7.78E-03
69	GO:0019888: protein phosphatase regulator activity	7.78E-03
70	GO:0061630: ubiquitin protein ligase activity	8.91E-03
71	GO:0031625: ubiquitin protein ligase binding	9.16E-03
72	GO:0017025: TBP-class protein binding	9.17E-03
73	GO:0030552: cAMP binding	9.17E-03
74	GO:0030553: cGMP binding	9.17E-03
75	GO:0004725: protein tyrosine phosphatase activity	9.90E-03
76	GO:0005216: ion channel activity	1.14E-02
77	GO:0043424: protein histidine kinase binding	1.14E-02
78	GO:0030551: cyclic nucleotide binding	1.64E-02
79	GO:0005249: voltage-gated potassium channel activity	1.64E-02
80	GO:0015144: carbohydrate transmembrane transporter activity	1.77E-02
81	GO:0005355: glucose transmembrane transporter activity	1.82E-02
82	GO:0016853: isomerase activity	1.82E-02
83	GO:0004872: receptor activity	1.92E-02
84	GO:0005351: sugar:proton symporter activity	2.00E-02
85	GO:0005515: protein binding	2.20E-02
86	GO:0008483: transaminase activity	2.41E-02
87	GO:0016597: amino acid binding	2.51E-02
88	GO:0016413: O-acetyltransferase activity	2.51E-02
89	GO:0015250: water channel activity	2.61E-02
90	GO:0051213: dioxygenase activity	2.61E-02
91	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.83E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	2.94E-02
93	GO:0000287: magnesium ion binding	3.11E-02
94	GO:0016491: oxidoreductase activity	3.15E-02
95	GO:0004842: ubiquitin-protein transferase activity	3.38E-02
96	GO:0030145: manganese ion binding	3.50E-02
97	GO:0004672: protein kinase activity	3.69E-02
98	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.74E-02
99	GO:0000149: SNARE binding	3.98E-02
100	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.98E-02
101	GO:0030246: carbohydrate binding	4.07E-02
102	GO:0005484: SNAP receptor activity	4.47E-02
103	GO:0005516: calmodulin binding	4.67E-02
104	GO:0004871: signal transducer activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.99E-11
2	GO:0016021: integral component of membrane	4.47E-06
3	GO:0005783: endoplasmic reticulum	2.51E-04
4	GO:0005778: peroxisomal membrane	2.63E-04
5	GO:0005789: endoplasmic reticulum membrane	3.35E-04
6	GO:0031314: extrinsic component of mitochondrial inner membrane	4.57E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.44E-04
8	GO:0005829: cytosol	8.63E-04
9	GO:0005741: mitochondrial outer membrane	1.01E-03
10	GO:0031461: cullin-RING ubiquitin ligase complex	1.06E-03
11	GO:0000164: protein phosphatase type 1 complex	1.80E-03
12	GO:0030140: trans-Golgi network transport vesicle	2.21E-03
13	GO:0005777: peroxisome	2.27E-03
14	GO:0005774: vacuolar membrane	2.43E-03
15	GO:0031597: cytosolic proteasome complex	2.66E-03
16	GO:0030173: integral component of Golgi membrane	2.66E-03
17	GO:0000794: condensed nuclear chromosome	3.13E-03
18	GO:0031595: nuclear proteasome complex	3.13E-03
19	GO:0031305: integral component of mitochondrial inner membrane	3.63E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	3.63E-03
21	GO:0030131: clathrin adaptor complex	3.63E-03
22	GO:0000151: ubiquitin ligase complex	3.76E-03
23	GO:0000325: plant-type vacuole	4.35E-03
24	GO:0016020: membrane	4.76E-03
25	GO:0005794: Golgi apparatus	4.94E-03
26	GO:0008540: proteasome regulatory particle, base subcomplex	5.27E-03
27	GO:0031902: late endosome membrane	5.66E-03
28	GO:0030125: clathrin vesicle coat	5.86E-03
29	GO:0005765: lysosomal membrane	6.48E-03
30	GO:0005773: vacuole	6.66E-03
31	GO:0031966: mitochondrial membrane	7.70E-03
32	GO:0000502: proteasome complex	8.27E-03
33	GO:0030176: integral component of endoplasmic reticulum membrane	9.17E-03
34	GO:0045271: respiratory chain complex I	1.14E-02
35	GO:0005905: clathrin-coated pit	1.22E-02
36	GO:0009524: phragmoplast	1.56E-02
37	GO:0005770: late endosome	1.73E-02
38	GO:0005887: integral component of plasma membrane	2.02E-02
39	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.47E-02
40	GO:0005819: spindle	3.98E-02
41	GO:0031201: SNARE complex	4.22E-02