Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G59250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:0034337: RNA folding0.00E+00
6GO:0006429: leucyl-tRNA aminoacylation0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0045176: apical protein localization0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
12GO:0016553: base conversion or substitution editing0.00E+00
13GO:0061635: regulation of protein complex stability0.00E+00
14GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
15GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
16GO:0015979: photosynthesis2.51E-18
17GO:0010027: thylakoid membrane organization1.12E-12
18GO:0009773: photosynthetic electron transport in photosystem I1.32E-11
19GO:0032544: plastid translation9.07E-07
20GO:0015995: chlorophyll biosynthetic process2.03E-06
21GO:0009735: response to cytokinin4.66E-06
22GO:0030388: fructose 1,6-bisphosphate metabolic process1.19E-05
23GO:1902326: positive regulation of chlorophyll biosynthetic process1.19E-05
24GO:0010196: nonphotochemical quenching2.08E-05
25GO:0042254: ribosome biogenesis2.32E-05
26GO:0006000: fructose metabolic process4.00E-05
27GO:0018298: protein-chromophore linkage4.20E-05
28GO:0042335: cuticle development7.62E-05
29GO:0006412: translation1.26E-04
30GO:0015994: chlorophyll metabolic process1.48E-04
31GO:0010207: photosystem II assembly2.18E-04
32GO:0042549: photosystem II stabilization3.19E-04
33GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.19E-04
34GO:0043953: protein transport by the Tat complex5.20E-04
35GO:0000481: maturation of 5S rRNA5.20E-04
36GO:0042371: vitamin K biosynthetic process5.20E-04
37GO:0065002: intracellular protein transmembrane transport5.20E-04
38GO:0006106: fumarate metabolic process5.20E-04
39GO:0010028: xanthophyll cycle5.20E-04
40GO:0071588: hydrogen peroxide mediated signaling pathway5.20E-04
41GO:0043489: RNA stabilization5.20E-04
42GO:0009658: chloroplast organization6.43E-04
43GO:0008610: lipid biosynthetic process6.79E-04
44GO:0006002: fructose 6-phosphate metabolic process8.29E-04
45GO:0071482: cellular response to light stimulus8.29E-04
46GO:0010206: photosystem II repair9.90E-04
47GO:0019252: starch biosynthetic process1.00E-03
48GO:0009662: etioplast organization1.12E-03
49GO:0034755: iron ion transmembrane transport1.12E-03
50GO:0016122: xanthophyll metabolic process1.12E-03
51GO:0010270: photosystem II oxygen evolving complex assembly1.12E-03
52GO:0035304: regulation of protein dephosphorylation1.12E-03
53GO:0043255: regulation of carbohydrate biosynthetic process1.12E-03
54GO:0080005: photosystem stoichiometry adjustment1.12E-03
55GO:1900871: chloroplast mRNA modification1.12E-03
56GO:0045717: negative regulation of fatty acid biosynthetic process1.12E-03
57GO:0055085: transmembrane transport1.16E-03
58GO:0010205: photoinhibition1.17E-03
59GO:0006869: lipid transport1.69E-03
60GO:0005983: starch catabolic process1.80E-03
61GO:0051604: protein maturation1.83E-03
62GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.83E-03
63GO:0016050: vesicle organization1.83E-03
64GO:1902448: positive regulation of shade avoidance1.83E-03
65GO:0006954: inflammatory response1.83E-03
66GO:0090391: granum assembly1.83E-03
67GO:0006518: peptide metabolic process1.83E-03
68GO:0006006: glucose metabolic process2.05E-03
69GO:0006094: gluconeogenesis2.05E-03
70GO:0005986: sucrose biosynthetic process2.05E-03
71GO:0009416: response to light stimulus2.11E-03
72GO:0019253: reductive pentose-phosphate cycle2.31E-03
73GO:2001141: regulation of RNA biosynthetic process2.66E-03
74GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.66E-03
75GO:0009152: purine ribonucleotide biosynthetic process2.66E-03
76GO:0046653: tetrahydrofolate metabolic process2.66E-03
77GO:0009052: pentose-phosphate shunt, non-oxidative branch2.66E-03
78GO:0080170: hydrogen peroxide transmembrane transport2.66E-03
79GO:1901332: negative regulation of lateral root development2.66E-03
80GO:0006833: water transport2.89E-03
81GO:0009631: cold acclimation2.96E-03
82GO:0006810: transport3.36E-03
83GO:0009768: photosynthesis, light harvesting in photosystem I3.54E-03
84GO:0010021: amylopectin biosynthetic process3.58E-03
85GO:0010109: regulation of photosynthesis3.58E-03
86GO:0009765: photosynthesis, light harvesting3.58E-03
87GO:0045727: positive regulation of translation3.58E-03
88GO:0061077: chaperone-mediated protein folding3.90E-03
89GO:0016120: carotene biosynthetic process4.59E-03
90GO:0006564: L-serine biosynthetic process4.59E-03
91GO:0010236: plastoquinone biosynthetic process4.59E-03
92GO:0045038: protein import into chloroplast thylakoid membrane4.59E-03
93GO:0006461: protein complex assembly4.59E-03
94GO:0032543: mitochondrial translation4.59E-03
95GO:0009306: protein secretion5.07E-03
96GO:0032973: amino acid export5.69E-03
97GO:0006014: D-ribose metabolic process5.69E-03
98GO:0048827: phyllome development5.69E-03
99GO:0000470: maturation of LSU-rRNA5.69E-03
100GO:0009913: epidermal cell differentiation5.69E-03
101GO:0006655: phosphatidylglycerol biosynthetic process5.69E-03
102GO:0016554: cytidine to uridine editing5.69E-03
103GO:0010190: cytochrome b6f complex assembly5.69E-03
104GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.69E-03
105GO:0010337: regulation of salicylic acid metabolic process5.69E-03
106GO:0006828: manganese ion transport5.69E-03
107GO:0034220: ion transmembrane transport5.95E-03
108GO:1901259: chloroplast rRNA processing6.87E-03
109GO:0030488: tRNA methylation6.87E-03
110GO:0010019: chloroplast-nucleus signaling pathway6.87E-03
111GO:0042372: phylloquinone biosynthetic process6.87E-03
112GO:0009409: response to cold7.23E-03
113GO:0055114: oxidation-reduction process7.50E-03
114GO:0006400: tRNA modification8.14E-03
115GO:0009395: phospholipid catabolic process8.14E-03
116GO:0009772: photosynthetic electron transport in photosystem II8.14E-03
117GO:0043090: amino acid import8.14E-03
118GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.14E-03
119GO:1900057: positive regulation of leaf senescence8.14E-03
120GO:0009645: response to low light intensity stimulus8.14E-03
121GO:0005975: carbohydrate metabolic process9.44E-03
122GO:0032508: DNA duplex unwinding9.47E-03
123GO:0010492: maintenance of shoot apical meristem identity9.47E-03
124GO:0030091: protein repair9.47E-03
125GO:0006605: protein targeting9.47E-03
126GO:0017004: cytochrome complex assembly1.09E-02
127GO:0009657: plastid organization1.09E-02
128GO:0048507: meristem development1.24E-02
129GO:0000373: Group II intron splicing1.24E-02
130GO:0009051: pentose-phosphate shunt, oxidative branch1.24E-02
131GO:0080144: amino acid homeostasis1.24E-02
132GO:0009638: phototropism1.39E-02
133GO:0006779: porphyrin-containing compound biosynthetic process1.39E-02
134GO:1900865: chloroplast RNA modification1.39E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.55E-02
136GO:0006032: chitin catabolic process1.55E-02
137GO:0006879: cellular iron ion homeostasis1.72E-02
138GO:0006352: DNA-templated transcription, initiation1.72E-02
139GO:0006415: translational termination1.72E-02
140GO:0009750: response to fructose1.72E-02
141GO:0000038: very long-chain fatty acid metabolic process1.72E-02
142GO:0019684: photosynthesis, light reaction1.72E-02
143GO:0006816: calcium ion transport1.72E-02
144GO:0009073: aromatic amino acid family biosynthetic process1.72E-02
145GO:0043085: positive regulation of catalytic activity1.72E-02
146GO:0045454: cell redox homeostasis1.82E-02
147GO:0006633: fatty acid biosynthetic process1.89E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.90E-02
149GO:0009637: response to blue light1.92E-02
150GO:0034599: cellular response to oxidative stress2.00E-02
151GO:0010102: lateral root morphogenesis2.08E-02
152GO:0009785: blue light signaling pathway2.08E-02
153GO:0006108: malate metabolic process2.08E-02
154GO:0010229: inflorescence development2.08E-02
155GO:0009718: anthocyanin-containing compound biosynthetic process2.08E-02
156GO:0009767: photosynthetic electron transport chain2.08E-02
157GO:0010628: positive regulation of gene expression2.08E-02
158GO:0009451: RNA modification2.19E-02
159GO:0010540: basipetal auxin transport2.27E-02
160GO:0071732: cellular response to nitric oxide2.46E-02
161GO:0010053: root epidermal cell differentiation2.46E-02
162GO:0009825: multidimensional cell growth2.46E-02
163GO:0010167: response to nitrate2.46E-02
164GO:0005985: sucrose metabolic process2.46E-02
165GO:0010114: response to red light2.47E-02
166GO:0006636: unsaturated fatty acid biosynthetic process2.66E-02
167GO:0010025: wax biosynthetic process2.66E-02
168GO:0009644: response to high light intensity2.68E-02
169GO:0000027: ribosomal large subunit assembly2.86E-02
170GO:0008152: metabolic process2.87E-02
171GO:0006855: drug transmembrane transport2.89E-02
172GO:0008299: isoprenoid biosynthetic process3.07E-02
173GO:0016575: histone deacetylation3.07E-02
174GO:0006418: tRNA aminoacylation for protein translation3.07E-02
175GO:0016998: cell wall macromolecule catabolic process3.28E-02
176GO:0016114: terpenoid biosynthetic process3.28E-02
177GO:0009809: lignin biosynthetic process3.33E-02
178GO:0006364: rRNA processing3.33E-02
179GO:0016226: iron-sulfur cluster assembly3.50E-02
180GO:0071369: cellular response to ethylene stimulus3.72E-02
181GO:0006012: galactose metabolic process3.72E-02
182GO:0006096: glycolytic process3.94E-02
183GO:0009561: megagametogenesis3.95E-02
184GO:0016117: carotenoid biosynthetic process4.18E-02
185GO:0006662: glycerol ether metabolic process4.66E-02
186GO:0080167: response to karrikin4.77E-02
RankGO TermAdjusted P value
1GO:0051060: pullulanase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
4GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
5GO:0046408: chlorophyll synthetase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0046608: carotenoid isomerase activity0.00E+00
10GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
11GO:0010303: limit dextrinase activity0.00E+00
12GO:0046422: violaxanthin de-epoxidase activity0.00E+00
13GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
14GO:0043014: alpha-tubulin binding0.00E+00
15GO:0051721: protein phosphatase 2A binding0.00E+00
16GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
17GO:0042903: tubulin deacetylase activity0.00E+00
18GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
19GO:0019843: rRNA binding3.18E-14
20GO:0005528: FK506 binding1.70E-08
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.36E-06
22GO:0008266: poly(U) RNA binding1.08E-05
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.19E-05
24GO:0016168: chlorophyll binding2.55E-05
25GO:0003735: structural constituent of ribosome4.15E-05
26GO:0016851: magnesium chelatase activity8.56E-05
27GO:0043495: protein anchor1.48E-04
28GO:0045485: omega-6 fatty acid desaturase activity5.20E-04
29GO:0004333: fumarate hydratase activity5.20E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.20E-04
31GO:0004856: xylulokinase activity5.20E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity5.20E-04
33GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity5.20E-04
34GO:0010242: oxygen evolving activity5.20E-04
35GO:0019899: enzyme binding5.46E-04
36GO:0022891: substrate-specific transmembrane transporter activity5.60E-04
37GO:0004033: aldo-keto reductase (NADP) activity6.79E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.12E-03
39GO:0008967: phosphoglycolate phosphatase activity1.12E-03
40GO:0047746: chlorophyllase activity1.12E-03
41GO:0009977: proton motive force dependent protein transmembrane transporter activity1.12E-03
42GO:0004617: phosphoglycerate dehydrogenase activity1.12E-03
43GO:0033201: alpha-1,4-glucan synthase activity1.12E-03
44GO:0016630: protochlorophyllide reductase activity1.12E-03
45GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.81E-03
46GO:0004751: ribose-5-phosphate isomerase activity1.83E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.83E-03
48GO:0070402: NADPH binding1.83E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.83E-03
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.83E-03
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.83E-03
52GO:0004373: glycogen (starch) synthase activity1.83E-03
53GO:0002161: aminoacyl-tRNA editing activity1.83E-03
54GO:0031072: heat shock protein binding2.05E-03
55GO:0004565: beta-galactosidase activity2.05E-03
56GO:0008236: serine-type peptidase activity2.30E-03
57GO:0016491: oxidoreductase activity2.54E-03
58GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.66E-03
59GO:0043023: ribosomal large subunit binding2.66E-03
60GO:0019201: nucleotide kinase activity2.66E-03
61GO:0048487: beta-tubulin binding2.66E-03
62GO:0016149: translation release factor activity, codon specific2.66E-03
63GO:0016788: hydrolase activity, acting on ester bonds2.66E-03
64GO:0031409: pigment binding2.89E-03
65GO:0051536: iron-sulfur cluster binding3.21E-03
66GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.58E-03
67GO:0004659: prenyltransferase activity3.58E-03
68GO:0001053: plastid sigma factor activity3.58E-03
69GO:0004345: glucose-6-phosphate dehydrogenase activity3.58E-03
70GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.58E-03
71GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.58E-03
72GO:0004045: aminoacyl-tRNA hydrolase activity3.58E-03
73GO:0016987: sigma factor activity3.58E-03
74GO:0009011: starch synthase activity3.58E-03
75GO:0004040: amidase activity4.59E-03
76GO:0003959: NADPH dehydrogenase activity4.59E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor4.59E-03
78GO:0016688: L-ascorbate peroxidase activity5.69E-03
79GO:0042578: phosphoric ester hydrolase activity5.69E-03
80GO:0004556: alpha-amylase activity5.69E-03
81GO:0004130: cytochrome-c peroxidase activity5.69E-03
82GO:0051920: peroxiredoxin activity6.87E-03
83GO:0004017: adenylate kinase activity6.87E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.87E-03
85GO:0004747: ribokinase activity6.87E-03
86GO:0016853: isomerase activity6.90E-03
87GO:0042802: identical protein binding7.41E-03
88GO:0004620: phospholipase activity8.14E-03
89GO:0005509: calcium ion binding8.21E-03
90GO:0016787: hydrolase activity8.73E-03
91GO:0003729: mRNA binding9.01E-03
92GO:0008865: fructokinase activity9.47E-03
93GO:0016209: antioxidant activity9.47E-03
94GO:0008312: 7S RNA binding9.47E-03
95GO:0004034: aldose 1-epimerase activity9.47E-03
96GO:0052747: sinapyl alcohol dehydrogenase activity9.47E-03
97GO:0043022: ribosome binding9.47E-03
98GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.09E-02
99GO:0015250: water channel activity1.15E-02
100GO:0003747: translation release factor activity1.24E-02
101GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.24E-02
102GO:0008289: lipid binding1.32E-02
103GO:0005384: manganese ion transmembrane transporter activity1.39E-02
104GO:0005381: iron ion transmembrane transporter activity1.39E-02
105GO:0003723: RNA binding1.39E-02
106GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.51E-02
107GO:0004568: chitinase activity1.55E-02
108GO:0008047: enzyme activator activity1.55E-02
109GO:0052689: carboxylic ester hydrolase activity1.61E-02
110GO:0004222: metalloendopeptidase activity1.67E-02
111GO:0015386: potassium:proton antiporter activity1.72E-02
112GO:0045551: cinnamyl-alcohol dehydrogenase activity1.90E-02
113GO:0004871: signal transducer activity1.95E-02
114GO:0015095: magnesium ion transmembrane transporter activity2.08E-02
115GO:0009982: pseudouridine synthase activity2.08E-02
116GO:0004022: alcohol dehydrogenase (NAD) activity2.08E-02
117GO:0050661: NADP binding2.19E-02
118GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.66E-02
119GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.66E-02
120GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.66E-02
121GO:0009055: electron carrier activity2.75E-02
122GO:0004407: histone deacetylase activity2.86E-02
123GO:0051287: NAD binding3.00E-02
124GO:0015079: potassium ion transmembrane transporter activity3.07E-02
125GO:0004176: ATP-dependent peptidase activity3.28E-02
126GO:0004601: peroxidase activity3.67E-02
127GO:0003756: protein disulfide isomerase activity3.95E-02
128GO:0047134: protein-disulfide reductase activity4.18E-02
129GO:0004812: aminoacyl-tRNA ligase activity4.18E-02
130GO:0051082: unfolded protein binding4.73E-02
131GO:0016746: transferase activity, transferring acyl groups4.87E-02
132GO:0004791: thioredoxin-disulfide reductase activity4.91E-02
133GO:0050662: coenzyme binding4.91E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast2.46E-95
4GO:0009535: chloroplast thylakoid membrane1.75E-54
5GO:0009570: chloroplast stroma3.02E-47
6GO:0009941: chloroplast envelope8.17E-35
7GO:0009534: chloroplast thylakoid3.29E-34
8GO:0009543: chloroplast thylakoid lumen1.67E-26
9GO:0009579: thylakoid1.34E-23
10GO:0031977: thylakoid lumen2.59E-17
11GO:0009654: photosystem II oxygen evolving complex4.65E-10
12GO:0019898: extrinsic component of membrane8.99E-09
13GO:0005840: ribosome3.18E-08
14GO:0031969: chloroplast membrane6.24E-08
15GO:0010287: plastoglobule1.11E-06
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.44E-06
17GO:0030095: chloroplast photosystem II1.08E-05
18GO:0009533: chloroplast stromal thylakoid2.08E-05
19GO:0042651: thylakoid membrane2.72E-05
20GO:0010007: magnesium chelatase complex4.00E-05
21GO:0009523: photosystem II1.14E-04
22GO:0009515: granal stacked thylakoid5.20E-04
23GO:0009547: plastid ribosome5.20E-04
24GO:0045239: tricarboxylic acid cycle enzyme complex5.20E-04
25GO:0031361: integral component of thylakoid membrane5.20E-04
26GO:0009782: photosystem I antenna complex5.20E-04
27GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.20E-04
28GO:0016020: membrane7.21E-04
29GO:0080085: signal recognition particle, chloroplast targeting1.12E-03
30GO:0048046: apoplast1.21E-03
31GO:0032040: small-subunit processome1.80E-03
32GO:0033281: TAT protein transport complex1.83E-03
33GO:0030076: light-harvesting complex2.59E-03
34GO:0016021: integral component of membrane3.56E-03
35GO:0009526: plastid envelope3.58E-03
36GO:0055035: plastid thylakoid membrane4.59E-03
37GO:0009512: cytochrome b6f complex4.59E-03
38GO:0046658: anchored component of plasma membrane7.88E-03
39GO:0009501: amyloplast9.47E-03
40GO:0009295: nucleoid1.02E-02
41GO:0009706: chloroplast inner membrane1.06E-02
42GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.09E-02
43GO:0030529: intracellular ribonucleoprotein complex1.15E-02
44GO:0008180: COP9 signalosome1.24E-02
45GO:0015934: large ribosomal subunit1.75E-02
46GO:0000311: plastid large ribosomal subunit1.90E-02
47GO:0009508: plastid chromosome2.08E-02
48GO:0015935: small ribosomal subunit3.28E-02
49GO:0009536: plastid3.76E-02
50GO:0005770: late endosome4.66E-02
51GO:0009522: photosystem I4.91E-02
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Gene type



Gene DE type