co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0006412: translation	3.08E-142
3	GO:0042254: ribosome biogenesis	1.39E-51
4	GO:0000027: ribosomal large subunit assembly	5.05E-09
5	GO:0009735: response to cytokinin	6.74E-09
6	GO:0000028: ribosomal small subunit assembly	8.30E-09
7	GO:0009955: adaxial/abaxial pattern specification	5.39E-07
8	GO:0002181: cytoplasmic translation	4.02E-06
9	GO:0009423: chorismate biosynthetic process	6.00E-05
10	GO:0006407: rRNA export from nucleus	1.48E-04
11	GO:0018920: glyphosate metabolic process	1.48E-04
12	GO:0030490: maturation of SSU-rRNA	1.48E-04
13	GO:0000494: box C/D snoRNA 3'-end processing	1.48E-04
14	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.48E-04
15	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.48E-04
16	GO:1990258: histone glutamine methylation	1.48E-04
17	GO:0009073: aromatic amino acid family biosynthetic process	2.65E-04
18	GO:0048569: post-embryonic animal organ development	3.38E-04
19	GO:0055129: L-proline biosynthetic process	3.38E-04
20	GO:0009967: positive regulation of signal transduction	3.38E-04
21	GO:0006626: protein targeting to mitochondrion	3.47E-04
22	GO:0009965: leaf morphogenesis	5.32E-04
23	GO:0010476: gibberellin mediated signaling pathway	5.54E-04
24	GO:0042256: mature ribosome assembly	5.54E-04
25	GO:0090506: axillary shoot meristem initiation	5.54E-04
26	GO:0006364: rRNA processing	6.67E-04
27	GO:0070301: cellular response to hydrogen peroxide	7.93E-04
28	GO:0006241: CTP biosynthetic process	7.93E-04
29	GO:0006165: nucleoside diphosphate phosphorylation	7.93E-04
30	GO:0006228: UTP biosynthetic process	7.93E-04
31	GO:2000032: regulation of secondary shoot formation	1.05E-03
32	GO:0042274: ribosomal small subunit biogenesis	1.05E-03
33	GO:0006183: GTP biosynthetic process	1.05E-03
34	GO:0009793: embryo development ending in seed dormancy	1.06E-03
35	GO:0071493: cellular response to UV-B	1.33E-03
36	GO:0031167: rRNA methylation	1.33E-03
37	GO:0006561: proline biosynthetic process	1.63E-03
38	GO:0000470: maturation of LSU-rRNA	1.63E-03
39	GO:0000911: cytokinesis by cell plate formation	1.96E-03
40	GO:0009651: response to salt stress	2.39E-03
41	GO:0001558: regulation of cell growth	3.04E-03
42	GO:0001510: RNA methylation	3.04E-03
43	GO:0009245: lipid A biosynthetic process	3.44E-03
44	GO:0008283: cell proliferation	3.90E-03
45	GO:0006352: DNA-templated transcription, initiation	4.73E-03
46	GO:0010015: root morphogenesis	4.73E-03
47	GO:0006913: nucleocytoplasmic transport	4.73E-03
48	GO:0006820: anion transport	5.20E-03
49	GO:0010229: inflorescence development	5.68E-03
50	GO:0010102: lateral root morphogenesis	5.68E-03
51	GO:0030150: protein import into mitochondrial matrix	7.74E-03
52	GO:0051302: regulation of cell division	8.29E-03
53	GO:0015992: proton transport	8.85E-03
54	GO:0040007: growth	1.00E-02
55	GO:0071215: cellular response to abscisic acid stimulus	1.00E-02
56	GO:0008033: tRNA processing	1.19E-02
57	GO:0006413: translational initiation	1.21E-02
58	GO:0009749: response to glucose	1.39E-02
59	GO:0009791: post-embryonic development	1.39E-02
60	GO:0032502: developmental process	1.52E-02
61	GO:0010090: trichome morphogenesis	1.59E-02
62	GO:0009409: response to cold	1.67E-02
63	GO:0010252: auxin homeostasis	1.67E-02
64	GO:0046686: response to cadmium ion	2.06E-02
65	GO:0006811: ion transport	2.45E-02
66	GO:0010043: response to zinc ion	2.53E-02
67	GO:0006414: translational elongation	2.63E-02
68	GO:0009640: photomorphogenesis	3.23E-02
69	GO:0009644: response to high light intensity	3.42E-02
70	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.71E-02
71	GO:0006417: regulation of translation	4.30E-02
72	GO:0009620: response to fungus	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	1.63E-162
4	GO:0003729: mRNA binding	2.22E-40
5	GO:0019843: rRNA binding	2.83E-08
6	GO:0008097: 5S rRNA binding	9.39E-06
7	GO:1990259: histone-glutamine methyltransferase activity	1.48E-04
8	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	1.48E-04
9	GO:0030371: translation repressor activity	1.48E-04
10	GO:0005078: MAP-kinase scaffold activity	3.38E-04
11	GO:0008649: rRNA methyltransferase activity	5.54E-04
12	GO:0070180: large ribosomal subunit rRNA binding	5.54E-04
13	GO:0032947: protein complex scaffold	5.54E-04
14	GO:0070181: small ribosomal subunit rRNA binding	5.54E-04
15	GO:0004550: nucleoside diphosphate kinase activity	7.93E-04
16	GO:0031177: phosphopantetheine binding	1.63E-03
17	GO:0000035: acyl binding	1.96E-03
18	GO:0008235: metalloexopeptidase activity	2.30E-03
19	GO:0030515: snoRNA binding	2.30E-03
20	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.40E-03
21	GO:0015288: porin activity	2.66E-03
22	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.66E-03
23	GO:0008308: voltage-gated anion channel activity	3.04E-03
24	GO:0003723: RNA binding	5.54E-03
25	GO:0015266: protein channel activity	5.68E-03
26	GO:0010181: FMN binding	1.32E-02
27	GO:0050897: cobalt ion binding	2.53E-02
28	GO:0003746: translation elongation factor activity	2.70E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	1.47E-117
2	GO:0022625: cytosolic large ribosomal subunit	3.30E-108
3	GO:0005840: ribosome	2.33E-98
4	GO:0022627: cytosolic small ribosomal subunit	4.04E-55
5	GO:0005730: nucleolus	1.96E-39
6	GO:0005737: cytoplasm	8.31E-39
7	GO:0005829: cytosol	1.98E-34
8	GO:0009506: plasmodesma	3.26E-32
9	GO:0015934: large ribosomal subunit	3.09E-28
10	GO:0005618: cell wall	3.06E-15
11	GO:0005774: vacuolar membrane	1.18E-14
12	GO:0016020: membrane	4.22E-14
13	GO:0005773: vacuole	5.89E-12
14	GO:0015935: small ribosomal subunit	9.27E-11
15	GO:0005886: plasma membrane	4.43E-07
16	GO:0009507: chloroplast	1.34E-06
17	GO:0030686: 90S preribosome	1.48E-04
18	GO:0005853: eukaryotic translation elongation factor 1 complex	5.54E-04
19	GO:0031428: box C/D snoRNP complex	1.63E-03
20	GO:0031597: cytosolic proteasome complex	1.96E-03
21	GO:0046930: pore complex	3.04E-03
22	GO:0005742: mitochondrial outer membrane translocase complex	3.04E-03
23	GO:0008180: COP9 signalosome	3.44E-03
24	GO:0015030: Cajal body	3.86E-03
25	GO:0005852: eukaryotic translation initiation factor 3 complex	4.73E-03
26	GO:0032040: small-subunit processome	5.20E-03
27	GO:0005758: mitochondrial intermembrane space	7.74E-03
28	GO:0070469: respiratory chain	8.29E-03
29	GO:0005622: intracellular	8.67E-03
30	GO:0005741: mitochondrial outer membrane	8.85E-03
31	GO:0016592: mediator complex	1.52E-02
32	GO:0030529: intracellular ribonucleoprotein complex	1.89E-02
33	GO:0005743: mitochondrial inner membrane	3.42E-02
34	GO:0005834: heterotrimeric G-protein complex	4.71E-02