Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0006066: alcohol metabolic process0.00E+00
3GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
4GO:0017009: protein-phycocyanobilin linkage0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0015739: sialic acid transport0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I8.90E-08
11GO:0031022: nuclear migration along microfilament4.44E-06
12GO:0010021: amylopectin biosynthetic process1.93E-05
13GO:0015979: photosynthesis2.34E-05
14GO:0009853: photorespiration2.55E-05
15GO:0009904: chloroplast accumulation movement3.14E-05
16GO:0010304: PSII associated light-harvesting complex II catabolic process4.69E-05
17GO:0009644: response to high light intensity4.90E-05
18GO:0009903: chloroplast avoidance movement6.56E-05
19GO:0055114: oxidation-reduction process9.36E-05
20GO:0019252: starch biosynthetic process9.77E-05
21GO:0048564: photosystem I assembly1.13E-04
22GO:0009704: de-etiolation1.13E-04
23GO:0010362: negative regulation of anion channel activity by blue light1.56E-04
24GO:0071277: cellular response to calcium ion1.56E-04
25GO:0080051: cutin transport1.56E-04
26GO:0010206: photosystem II repair1.73E-04
27GO:0010205: photoinhibition2.08E-04
28GO:0018298: protein-chromophore linkage2.66E-04
29GO:0016122: xanthophyll metabolic process3.55E-04
30GO:0030388: fructose 1,6-bisphosphate metabolic process3.55E-04
31GO:0046741: transport of virus in host, tissue to tissue3.55E-04
32GO:0009915: phloem sucrose loading3.55E-04
33GO:0080005: photosystem stoichiometry adjustment3.55E-04
34GO:0015908: fatty acid transport3.55E-04
35GO:0015786: UDP-glucose transport3.55E-04
36GO:0097054: L-glutamate biosynthetic process3.55E-04
37GO:0006094: gluconeogenesis3.74E-04
38GO:0005986: sucrose biosynthetic process3.74E-04
39GO:0010020: chloroplast fission4.23E-04
40GO:0019253: reductive pentose-phosphate cycle4.23E-04
41GO:0015783: GDP-fucose transport5.82E-04
42GO:0000913: preprophase band assembly5.82E-04
43GO:0006000: fructose metabolic process5.82E-04
44GO:0006954: inflammatory response5.82E-04
45GO:0016226: iron-sulfur cluster assembly7.69E-04
46GO:0009735: response to cytokinin7.84E-04
47GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.33E-04
48GO:0006020: inositol metabolic process8.33E-04
49GO:0071484: cellular response to light intensity8.33E-04
50GO:0009152: purine ribonucleotide biosynthetic process8.33E-04
51GO:0046653: tetrahydrofolate metabolic process8.33E-04
52GO:0072334: UDP-galactose transmembrane transport8.33E-04
53GO:0006537: glutamate biosynthetic process8.33E-04
54GO:0043572: plastid fission8.33E-04
55GO:0010222: stem vascular tissue pattern formation1.10E-03
56GO:0019676: ammonia assimilation cycle1.10E-03
57GO:0015994: chlorophyll metabolic process1.10E-03
58GO:0031122: cytoplasmic microtubule organization1.10E-03
59GO:0008295: spermidine biosynthetic process1.10E-03
60GO:0006021: inositol biosynthetic process1.10E-03
61GO:0009902: chloroplast relocation1.10E-03
62GO:0007018: microtubule-based movement1.21E-03
63GO:0009791: post-embryonic development1.30E-03
64GO:0016120: carotene biosynthetic process1.40E-03
65GO:0043097: pyrimidine nucleoside salvage1.40E-03
66GO:0010117: photoprotection1.40E-03
67GO:0009058: biosynthetic process1.61E-03
68GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.72E-03
69GO:0006206: pyrimidine nucleobase metabolic process1.72E-03
70GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.72E-03
71GO:0046855: inositol phosphate dephosphorylation1.72E-03
72GO:0042026: protein refolding2.06E-03
73GO:0006458: 'de novo' protein folding2.06E-03
74GO:0010189: vitamin E biosynthetic process2.06E-03
75GO:0009854: oxidative photosynthetic carbon pathway2.06E-03
76GO:0007623: circadian rhythm2.26E-03
77GO:0009395: phospholipid catabolic process2.42E-03
78GO:0010196: nonphotochemical quenching2.42E-03
79GO:0009645: response to low light intensity stimulus2.42E-03
80GO:0016559: peroxisome fission2.80E-03
81GO:0005978: glycogen biosynthetic process2.80E-03
82GO:0006002: fructose 6-phosphate metabolic process3.21E-03
83GO:0071482: cellular response to light stimulus3.21E-03
84GO:0015780: nucleotide-sugar transport3.63E-03
85GO:0006098: pentose-phosphate shunt3.63E-03
86GO:0009821: alkaloid biosynthetic process3.63E-03
87GO:0034765: regulation of ion transmembrane transport3.63E-03
88GO:0090333: regulation of stomatal closure3.63E-03
89GO:0000373: Group II intron splicing3.63E-03
90GO:0009658: chloroplast organization3.92E-03
91GO:0005982: starch metabolic process4.06E-03
92GO:0009638: phototropism4.06E-03
93GO:0019538: protein metabolic process4.52E-03
94GO:0045036: protein targeting to chloroplast4.52E-03
95GO:0018119: peptidyl-cysteine S-nitrosylation4.99E-03
96GO:0006790: sulfur compound metabolic process5.48E-03
97GO:0005983: starch catabolic process5.48E-03
98GO:0010588: cotyledon vascular tissue pattern formation5.98E-03
99GO:0009266: response to temperature stimulus6.50E-03
100GO:0006096: glycolytic process6.69E-03
101GO:0005985: sucrose metabolic process7.04E-03
102GO:0046854: phosphatidylinositol phosphorylation7.04E-03
103GO:0019762: glucosinolate catabolic process7.59E-03
104GO:0009833: plant-type primary cell wall biogenesis7.59E-03
105GO:0051302: regulation of cell division8.74E-03
106GO:0008299: isoprenoid biosynthetic process8.74E-03
107GO:0007017: microtubule-based process8.74E-03
108GO:0009768: photosynthesis, light harvesting in photosystem I8.74E-03
109GO:0061077: chaperone-mediated protein folding9.34E-03
110GO:0019748: secondary metabolic process9.96E-03
111GO:0006730: one-carbon metabolic process9.96E-03
112GO:0006817: phosphate ion transport1.12E-02
113GO:0016117: carotenoid biosynthetic process1.19E-02
114GO:0010118: stomatal movement1.25E-02
115GO:0042631: cellular response to water deprivation1.25E-02
116GO:0042391: regulation of membrane potential1.25E-02
117GO:0006520: cellular amino acid metabolic process1.32E-02
118GO:0015986: ATP synthesis coupled proton transport1.39E-02
119GO:0006814: sodium ion transport1.39E-02
120GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.54E-02
121GO:0000302: response to reactive oxygen species1.54E-02
122GO:0016032: viral process1.61E-02
123GO:0019761: glucosinolate biosynthetic process1.61E-02
124GO:0030163: protein catabolic process1.68E-02
125GO:0009611: response to wounding1.80E-02
126GO:0071805: potassium ion transmembrane transport1.84E-02
127GO:0009409: response to cold1.87E-02
128GO:0000910: cytokinesis1.92E-02
129GO:0016126: sterol biosynthetic process1.99E-02
130GO:0010027: thylakoid membrane organization1.99E-02
131GO:0009816: defense response to bacterium, incompatible interaction2.07E-02
132GO:0006810: transport2.11E-02
133GO:0046686: response to cadmium ion2.31E-02
134GO:0055085: transmembrane transport2.37E-02
135GO:0006457: protein folding2.42E-02
136GO:0000160: phosphorelay signal transduction system2.50E-02
137GO:0080167: response to karrikin2.69E-02
138GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.78E-02
139GO:0009637: response to blue light2.85E-02
140GO:0046777: protein autophosphorylation2.87E-02
141GO:0006631: fatty acid metabolic process3.22E-02
142GO:0009744: response to sucrose3.42E-02
143GO:0051707: response to other organism3.42E-02
144GO:0008643: carbohydrate transport3.61E-02
145GO:0006855: drug transmembrane transport3.81E-02
146GO:0031347: regulation of defense response3.91E-02
147GO:0006629: lipid metabolic process3.96E-02
148GO:0042742: defense response to bacterium4.22E-02
149GO:0009753: response to jasmonic acid4.24E-02
150GO:0006417: regulation of translation4.54E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0051738: xanthophyll binding0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0016719: carotene 7,8-desaturase activity0.00E+00
5GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0046577: long-chain-alcohol oxidase activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0009976: tocopherol cyclase activity0.00E+00
10GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0015136: sialic acid transmembrane transporter activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0008974: phosphoribulokinase activity0.00E+00
15GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
16GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
17GO:0008465: glycerate dehydrogenase activity0.00E+00
18GO:1990534: thermospermine oxidase activity0.00E+00
19GO:0009011: starch synthase activity1.93E-05
20GO:0035671: enone reductase activity1.56E-04
21GO:0050308: sugar-phosphatase activity1.56E-04
22GO:0008568: microtubule-severing ATPase activity1.56E-04
23GO:0019203: carbohydrate phosphatase activity1.56E-04
24GO:0015245: fatty acid transporter activity1.56E-04
25GO:0016041: glutamate synthase (ferredoxin) activity1.56E-04
26GO:0004328: formamidase activity1.56E-04
27GO:0030941: chloroplast targeting sequence binding1.56E-04
28GO:0016168: chlorophyll binding1.99E-04
29GO:0004766: spermidine synthase activity3.55E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity3.55E-04
31GO:0033201: alpha-1,4-glucan synthase activity3.55E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.55E-04
33GO:0008805: carbon-monoxide oxygenase activity3.55E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity3.55E-04
35GO:0003844: 1,4-alpha-glucan branching enzyme activity3.55E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity3.55E-04
37GO:0008967: phosphoglycolate phosphatase activity3.55E-04
38GO:0016491: oxidoreductase activity3.60E-04
39GO:0008864: formyltetrahydrofolate deformylase activity5.82E-04
40GO:0005457: GDP-fucose transmembrane transporter activity5.82E-04
41GO:0043169: cation binding5.82E-04
42GO:0004373: glycogen (starch) synthase activity5.82E-04
43GO:0032947: protein complex scaffold5.82E-04
44GO:0050307: sucrose-phosphate phosphatase activity5.82E-04
45GO:0016742: hydroxymethyl-, formyl- and related transferase activity5.82E-04
46GO:0070402: NADPH binding5.82E-04
47GO:0051536: iron-sulfur cluster binding5.84E-04
48GO:0004176: ATP-dependent peptidase activity7.05E-04
49GO:0016788: hydrolase activity, acting on ester bonds7.07E-04
50GO:0016887: ATPase activity7.23E-04
51GO:0008508: bile acid:sodium symporter activity8.33E-04
52GO:0005460: UDP-glucose transmembrane transporter activity8.33E-04
53GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides8.33E-04
54GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity8.33E-04
55GO:0009882: blue light photoreceptor activity8.33E-04
56GO:0003777: microtubule motor activity8.34E-04
57GO:0022891: substrate-specific transmembrane transporter activity8.37E-04
58GO:0005319: lipid transporter activity1.10E-03
59GO:0051861: glycolipid binding1.10E-03
60GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.10E-03
61GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.10E-03
62GO:0008453: alanine-glyoxylate transaminase activity1.10E-03
63GO:0080032: methyl jasmonate esterase activity1.10E-03
64GO:0004506: squalene monooxygenase activity1.10E-03
65GO:0016853: isomerase activity1.21E-03
66GO:0048038: quinone binding1.39E-03
67GO:0005459: UDP-galactose transmembrane transporter activity1.40E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding1.40E-03
69GO:2001070: starch binding1.72E-03
70GO:0080030: methyl indole-3-acetate esterase activity1.72E-03
71GO:0004332: fructose-bisphosphate aldolase activity1.72E-03
72GO:0000210: NAD+ diphosphatase activity1.72E-03
73GO:0008237: metallopeptidase activity1.78E-03
74GO:0005242: inward rectifier potassium channel activity2.06E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.06E-03
76GO:0004849: uridine kinase activity2.06E-03
77GO:0008017: microtubule binding2.39E-03
78GO:0005338: nucleotide-sugar transmembrane transporter activity2.42E-03
79GO:0004033: aldo-keto reductase (NADP) activity2.80E-03
80GO:0043022: ribosome binding2.80E-03
81GO:0004222: metalloendopeptidase activity2.85E-03
82GO:0042802: identical protein binding3.06E-03
83GO:0008135: translation factor activity, RNA binding3.21E-03
84GO:0015078: hydrogen ion transmembrane transporter activity3.21E-03
85GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors3.63E-03
86GO:0008138: protein tyrosine/serine/threonine phosphatase activity3.63E-03
87GO:0016844: strictosidine synthase activity4.06E-03
88GO:0030234: enzyme regulator activity4.52E-03
89GO:0044183: protein binding involved in protein folding4.99E-03
90GO:0047372: acylglycerol lipase activity4.99E-03
91GO:0000155: phosphorelay sensor kinase activity5.98E-03
92GO:0005315: inorganic phosphate transmembrane transporter activity5.98E-03
93GO:0004089: carbonate dehydratase activity5.98E-03
94GO:0008266: poly(U) RNA binding6.50E-03
95GO:0008131: primary amine oxidase activity6.50E-03
96GO:0031409: pigment binding7.59E-03
97GO:0016787: hydrolase activity1.19E-02
98GO:0005249: voltage-gated potassium channel activity1.25E-02
99GO:0030551: cyclic nucleotide binding1.25E-02
100GO:0046872: metal ion binding1.28E-02
101GO:0015297: antiporter activity1.33E-02
102GO:0010181: FMN binding1.39E-02
103GO:0051213: dioxygenase activity1.99E-02
104GO:0015238: drug transmembrane transporter activity2.50E-02
105GO:0050660: flavin adenine dinucleotide binding2.51E-02
106GO:0030145: manganese ion binding2.67E-02
107GO:0003746: translation elongation factor activity2.85E-02
108GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.85E-02
109GO:0003993: acid phosphatase activity2.94E-02
110GO:0005515: protein binding2.99E-02
111GO:0005525: GTP binding3.27E-02
112GO:0042803: protein homodimerization activity3.37E-02
113GO:0004185: serine-type carboxypeptidase activity3.42E-02
114GO:0005198: structural molecule activity3.71E-02
115GO:0015293: symporter activity3.71E-02
116GO:0005524: ATP binding3.90E-02
117GO:0051287: NAD binding3.91E-02
118GO:0003924: GTPase activity3.96E-02
119GO:0009055: electron carrier activity4.24E-02
120GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.86E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009507: chloroplast1.49E-31
3GO:0009941: chloroplast envelope7.01E-20
4GO:0009570: chloroplast stroma5.52E-16
5GO:0009535: chloroplast thylakoid membrane7.22E-15
6GO:0009534: chloroplast thylakoid4.38E-13
7GO:0009579: thylakoid2.39E-09
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.70E-08
9GO:0009707: chloroplast outer membrane1.57E-05
10GO:0009501: amyloplast1.13E-04
11GO:0010319: stromule1.56E-04
12GO:0009782: photosystem I antenna complex1.56E-04
13GO:0043190: ATP-binding cassette (ABC) transporter complex1.56E-04
14GO:0010287: plastoglobule1.88E-04
15GO:0048046: apoplast3.34E-04
16GO:0031977: thylakoid lumen4.55E-04
17GO:0009897: external side of plasma membrane5.82E-04
18GO:0009509: chromoplast5.82E-04
19GO:0005871: kinesin complex9.79E-04
20GO:0030286: dynein complex1.10E-03
21GO:0009517: PSII associated light-harvesting complex II1.10E-03
22GO:0009706: chloroplast inner membrane1.14E-03
23GO:0009523: photosystem II1.30E-03
24GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)1.72E-03
25GO:0031359: integral component of chloroplast outer membrane2.42E-03
26GO:0016021: integral component of membrane7.03E-03
27GO:0030076: light-harvesting complex7.04E-03
28GO:0005875: microtubule associated complex7.59E-03
29GO:0009654: photosystem II oxygen evolving complex8.74E-03
30GO:0016020: membrane9.63E-03
31GO:0009543: chloroplast thylakoid lumen1.01E-02
32GO:0005623: cell1.04E-02
33GO:0019898: extrinsic component of membrane1.46E-02
34GO:0009504: cell plate1.46E-02
35GO:0005694: chromosome1.61E-02
36GO:0030529: intracellular ribonucleoprotein complex1.99E-02
37GO:0005777: peroxisome2.09E-02
38GO:0005829: cytosol2.58E-02
39GO:0005874: microtubule2.60E-02
40GO:0005819: spindle3.04E-02
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Gene type



Gene DE type