Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0043972: histone H3-K23 acetylation0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0009106: lipoate metabolic process0.00E+00
8GO:0006573: valine metabolic process0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0009249: protein lipoylation0.00E+00
13GO:0044154: histone H3-K14 acetylation0.00E+00
14GO:0009658: chloroplast organization1.16E-07
15GO:0019464: glycine decarboxylation via glycine cleavage system5.02E-07
16GO:0019253: reductive pentose-phosphate cycle2.27E-06
17GO:0042026: protein refolding3.80E-06
18GO:0010275: NAD(P)H dehydrogenase complex assembly4.63E-06
19GO:0009853: photorespiration1.33E-05
20GO:0016117: carotenoid biosynthetic process1.57E-05
21GO:0009773: photosynthetic electron transport in photosystem I4.09E-05
22GO:0018119: peptidyl-cysteine S-nitrosylation4.09E-05
23GO:0006546: glycine catabolic process6.53E-05
24GO:0009902: chloroplast relocation6.53E-05
25GO:0016123: xanthophyll biosynthetic process1.03E-04
26GO:0006810: transport1.39E-04
27GO:0010190: cytochrome b6f complex assembly1.48E-04
28GO:0061077: chaperone-mediated protein folding1.66E-04
29GO:0006458: 'de novo' protein folding2.02E-04
30GO:0009744: response to sucrose2.63E-04
31GO:0006438: valyl-tRNA aminoacylation3.19E-04
32GO:0043971: histone H3-K18 acetylation3.19E-04
33GO:0010480: microsporocyte differentiation3.19E-04
34GO:0006551: leucine metabolic process3.19E-04
35GO:0009443: pyridoxal 5'-phosphate salvage3.19E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.19E-04
37GO:0010362: negative regulation of anion channel activity by blue light3.19E-04
38GO:0071482: cellular response to light stimulus4.07E-04
39GO:0046686: response to cadmium ion5.74E-04
40GO:1900865: chloroplast RNA modification5.78E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process6.97E-04
42GO:0097054: L-glutamate biosynthetic process6.97E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process6.97E-04
44GO:0080183: response to photooxidative stress6.97E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process6.97E-04
46GO:0006352: DNA-templated transcription, initiation7.78E-04
47GO:0018298: protein-chromophore linkage9.78E-04
48GO:0009767: photosynthetic electron transport chain1.01E-03
49GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.09E-03
50GO:0006518: peptide metabolic process1.13E-03
51GO:0006000: fructose metabolic process1.13E-03
52GO:0010020: chloroplast fission1.13E-03
53GO:0006696: ergosterol biosynthetic process1.13E-03
54GO:0090506: axillary shoot meristem initiation1.13E-03
55GO:0000913: preprophase band assembly1.13E-03
56GO:0031022: nuclear migration along microfilament1.13E-03
57GO:0010207: photosystem II assembly1.13E-03
58GO:0009409: response to cold1.24E-03
59GO:0090351: seedling development1.26E-03
60GO:0009416: response to light stimulus1.54E-03
61GO:0006241: CTP biosynthetic process1.62E-03
62GO:0010731: protein glutathionylation1.62E-03
63GO:0006165: nucleoside diphosphate phosphorylation1.62E-03
64GO:0006228: UTP biosynthetic process1.62E-03
65GO:0043572: plastid fission1.62E-03
66GO:2001141: regulation of RNA biosynthetic process1.62E-03
67GO:0016556: mRNA modification1.62E-03
68GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.62E-03
69GO:0051085: chaperone mediated protein folding requiring cofactor1.62E-03
70GO:0010239: chloroplast mRNA processing1.62E-03
71GO:0006537: glutamate biosynthetic process1.62E-03
72GO:0033014: tetrapyrrole biosynthetic process1.62E-03
73GO:0007623: circadian rhythm1.67E-03
74GO:0006730: one-carbon metabolic process2.06E-03
75GO:0007005: mitochondrion organization2.06E-03
76GO:0080092: regulation of pollen tube growth2.06E-03
77GO:0071483: cellular response to blue light2.18E-03
78GO:0019676: ammonia assimilation cycle2.18E-03
79GO:0009765: photosynthesis, light harvesting2.18E-03
80GO:0006183: GTP biosynthetic process2.18E-03
81GO:0045727: positive regulation of translation2.18E-03
82GO:0009904: chloroplast accumulation movement2.78E-03
83GO:0010236: plastoquinone biosynthetic process2.78E-03
84GO:0016120: carotene biosynthetic process2.78E-03
85GO:0006544: glycine metabolic process2.78E-03
86GO:0043097: pyrimidine nucleoside salvage2.78E-03
87GO:0009107: lipoate biosynthetic process2.78E-03
88GO:0080110: sporopollenin biosynthetic process2.78E-03
89GO:0009741: response to brassinosteroid3.08E-03
90GO:0006096: glycolytic process3.28E-03
91GO:0010358: leaf shaping3.43E-03
92GO:0016554: cytidine to uridine editing3.43E-03
93GO:0006206: pyrimidine nucleobase metabolic process3.43E-03
94GO:0006563: L-serine metabolic process3.43E-03
95GO:0042549: photosystem II stabilization3.43E-03
96GO:0070814: hydrogen sulfide biosynthetic process3.43E-03
97GO:0009791: post-embryonic development3.56E-03
98GO:0009082: branched-chain amino acid biosynthetic process4.13E-03
99GO:0017148: negative regulation of translation4.13E-03
100GO:0010067: procambium histogenesis4.13E-03
101GO:0009099: valine biosynthetic process4.13E-03
102GO:0009903: chloroplast avoidance movement4.13E-03
103GO:1901259: chloroplast rRNA processing4.13E-03
104GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.13E-03
105GO:0009645: response to low light intensity stimulus4.87E-03
106GO:0048437: floral organ development4.87E-03
107GO:0008610: lipid biosynthetic process5.66E-03
108GO:0009704: de-etiolation5.66E-03
109GO:0016559: peroxisome fission5.66E-03
110GO:0048564: photosystem I assembly5.66E-03
111GO:0009097: isoleucine biosynthetic process6.49E-03
112GO:0006526: arginine biosynthetic process6.49E-03
113GO:0032544: plastid translation6.49E-03
114GO:0009657: plastid organization6.49E-03
115GO:0044030: regulation of DNA methylation6.49E-03
116GO:0017004: cytochrome complex assembly6.49E-03
117GO:0006002: fructose 6-phosphate metabolic process6.49E-03
118GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.49E-03
119GO:0010206: photosystem II repair7.36E-03
120GO:0006783: heme biosynthetic process7.36E-03
121GO:0000902: cell morphogenesis7.36E-03
122GO:0009638: phototropism8.27E-03
123GO:0006779: porphyrin-containing compound biosynthetic process8.27E-03
124GO:0035999: tetrahydrofolate interconversion8.27E-03
125GO:0009970: cellular response to sulfate starvation9.22E-03
126GO:0006535: cysteine biosynthetic process from serine9.22E-03
127GO:0000103: sulfate assimilation9.22E-03
128GO:0045036: protein targeting to chloroplast9.22E-03
129GO:0010192: mucilage biosynthetic process9.22E-03
130GO:0000272: polysaccharide catabolic process1.02E-02
131GO:0006415: translational termination1.02E-02
132GO:0048229: gametophyte development1.02E-02
133GO:0019684: photosynthesis, light reaction1.02E-02
134GO:0045037: protein import into chloroplast stroma1.12E-02
135GO:0006006: glucose metabolic process1.23E-02
136GO:0010075: regulation of meristem growth1.23E-02
137GO:0009725: response to hormone1.23E-02
138GO:0006094: gluconeogenesis1.23E-02
139GO:0005986: sucrose biosynthetic process1.23E-02
140GO:0009636: response to toxic substance1.33E-02
141GO:0010223: secondary shoot formation1.34E-02
142GO:0009934: regulation of meristem structural organization1.34E-02
143GO:0055114: oxidation-reduction process1.42E-02
144GO:0042343: indole glucosinolate metabolic process1.45E-02
145GO:0080188: RNA-directed DNA methylation1.45E-02
146GO:0007031: peroxisome organization1.45E-02
147GO:0009833: plant-type primary cell wall biogenesis1.57E-02
148GO:0019344: cysteine biosynthetic process1.69E-02
149GO:0009735: response to cytokinin1.70E-02
150GO:0016575: histone deacetylation1.81E-02
151GO:0006418: tRNA aminoacylation for protein translation1.81E-02
152GO:0009768: photosynthesis, light harvesting in photosystem I1.81E-02
153GO:0007017: microtubule-based process1.81E-02
154GO:0098542: defense response to other organism1.94E-02
155GO:0046777: protein autophosphorylation2.08E-02
156GO:0009294: DNA mediated transformation2.20E-02
157GO:0001944: vasculature development2.20E-02
158GO:0015979: photosynthesis2.26E-02
159GO:0010089: xylem development2.33E-02
160GO:0010584: pollen exine formation2.33E-02
161GO:0009742: brassinosteroid mediated signaling pathway2.41E-02
162GO:0010087: phloem or xylem histogenesis2.61E-02
163GO:0010118: stomatal movement2.61E-02
164GO:0048653: anther development2.61E-02
165GO:0042631: cellular response to water deprivation2.61E-02
166GO:0010268: brassinosteroid homeostasis2.75E-02
167GO:0008360: regulation of cell shape2.75E-02
168GO:0006457: protein folding2.85E-02
169GO:0007018: microtubule-based movement2.90E-02
170GO:0006814: sodium ion transport2.90E-02
171GO:0009646: response to absence of light2.90E-02
172GO:0019252: starch biosynthetic process3.05E-02
173GO:0009793: embryo development ending in seed dormancy3.10E-02
174GO:0016132: brassinosteroid biosynthetic process3.20E-02
175GO:0080156: mitochondrial mRNA modification3.20E-02
176GO:0016032: viral process3.35E-02
177GO:0032502: developmental process3.35E-02
178GO:0007264: small GTPase mediated signal transduction3.35E-02
179GO:0010583: response to cyclopentenone3.35E-02
180GO:0010090: trichome morphogenesis3.51E-02
181GO:0016125: sterol metabolic process3.67E-02
182GO:0010286: heat acclimation3.83E-02
183GO:0071805: potassium ion transmembrane transport3.83E-02
184GO:0000910: cytokinesis3.99E-02
185GO:0009816: defense response to bacterium, incompatible interaction4.33E-02
186GO:0009607: response to biotic stimulus4.33E-02
187GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.33E-02
188GO:0009627: systemic acquired resistance4.50E-02
189GO:0042128: nitrate assimilation4.50E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0008974: phosphoribulokinase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0004358: glutamate N-acetyltransferase activity0.00E+00
13GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
14GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
15GO:0050281: serine-glyoxylate transaminase activity0.00E+00
16GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
17GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.63E-06
18GO:0004375: glycine dehydrogenase (decarboxylating) activity3.65E-05
19GO:0044183: protein binding involved in protein folding4.09E-05
20GO:0016987: sigma factor activity6.53E-05
21GO:0001053: plastid sigma factor activity6.53E-05
22GO:0051082: unfolded protein binding1.07E-04
23GO:0004222: metalloendopeptidase activity1.34E-04
24GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.02E-04
25GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.02E-04
26GO:0003984: acetolactate synthase activity3.19E-04
27GO:0003867: 4-aminobutyrate transaminase activity3.19E-04
28GO:0004832: valine-tRNA ligase activity3.19E-04
29GO:0004325: ferrochelatase activity3.19E-04
30GO:0051996: squalene synthase activity3.19E-04
31GO:0016041: glutamate synthase (ferredoxin) activity3.19E-04
32GO:0010313: phytochrome binding3.19E-04
33GO:0030941: chloroplast targeting sequence binding3.19E-04
34GO:0010012: steroid 22-alpha hydroxylase activity3.19E-04
35GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.19E-04
36GO:0004033: aldo-keto reductase (NADP) activity3.32E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.97E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.97E-04
39GO:0050017: L-3-cyanoalanine synthase activity6.97E-04
40GO:0010291: carotene beta-ring hydroxylase activity6.97E-04
41GO:0008967: phosphoglycolate phosphatase activity6.97E-04
42GO:0017118: lipoyltransferase activity6.97E-04
43GO:0004618: phosphoglycerate kinase activity6.97E-04
44GO:0010297: heteropolysaccharide binding6.97E-04
45GO:0016415: octanoyltransferase activity6.97E-04
46GO:0004047: aminomethyltransferase activity6.97E-04
47GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.97E-04
48GO:0005089: Rho guanyl-nucleotide exchange factor activity7.78E-04
49GO:0031072: heat shock protein binding1.01E-03
50GO:0070330: aromatase activity1.13E-03
51GO:0003913: DNA photolyase activity1.13E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.13E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.13E-03
54GO:0004781: sulfate adenylyltransferase (ATP) activity1.13E-03
55GO:0070402: NADPH binding1.13E-03
56GO:0005528: FK506 binding1.56E-03
57GO:0048027: mRNA 5'-UTR binding1.62E-03
58GO:0048487: beta-tubulin binding1.62E-03
59GO:0016149: translation release factor activity, codon specific1.62E-03
60GO:0004550: nucleoside diphosphate kinase activity1.62E-03
61GO:0009882: blue light photoreceptor activity1.62E-03
62GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.62E-03
63GO:0008508: bile acid:sodium symporter activity1.62E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.62E-03
65GO:0033612: receptor serine/threonine kinase binding1.89E-03
66GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.18E-03
67GO:0010385: double-stranded methylated DNA binding2.18E-03
68GO:0051861: glycolipid binding2.18E-03
69GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.18E-03
70GO:0008453: alanine-glyoxylate transaminase activity2.18E-03
71GO:0018685: alkane 1-monooxygenase activity2.78E-03
72GO:0051538: 3 iron, 4 sulfur cluster binding2.78E-03
73GO:0008374: O-acyltransferase activity2.78E-03
74GO:0004372: glycine hydroxymethyltransferase activity2.78E-03
75GO:0050662: coenzyme binding3.32E-03
76GO:0042578: phosphoric ester hydrolase activity3.43E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.13E-03
78GO:0004124: cysteine synthase activity4.13E-03
79GO:0051753: mannan synthase activity4.13E-03
80GO:0004849: uridine kinase activity4.13E-03
81GO:0016759: cellulose synthase activity4.61E-03
82GO:0009881: photoreceptor activity4.87E-03
83GO:0043295: glutathione binding4.87E-03
84GO:0008237: metallopeptidase activity4.90E-03
85GO:0016597: amino acid binding5.20E-03
86GO:0019843: rRNA binding5.53E-03
87GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.72E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.49E-03
89GO:0008135: translation factor activity, RNA binding6.49E-03
90GO:0003843: 1,3-beta-D-glucan synthase activity6.49E-03
91GO:0005524: ATP binding7.01E-03
92GO:0003747: translation release factor activity7.36E-03
93GO:0003924: GTPase activity8.18E-03
94GO:0047617: acyl-CoA hydrolase activity8.27E-03
95GO:0003746: translation elongation factor activity9.12E-03
96GO:0004519: endonuclease activity9.30E-03
97GO:0004364: glutathione transferase activity1.13E-02
98GO:0042802: identical protein binding1.13E-02
99GO:0004565: beta-galactosidase activity1.23E-02
100GO:0000155: phosphorelay sensor kinase activity1.23E-02
101GO:0043621: protein self-association1.28E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding1.28E-02
103GO:0005198: structural molecule activity1.33E-02
104GO:0005525: GTP binding1.33E-02
105GO:0008266: poly(U) RNA binding1.34E-02
106GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.38E-02
107GO:0005515: protein binding1.52E-02
108GO:0031409: pigment binding1.57E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.59E-02
110GO:0005509: calcium ion binding1.65E-02
111GO:0004407: histone deacetylase activity1.69E-02
112GO:0015079: potassium ion transmembrane transporter activity1.81E-02
113GO:0043424: protein histidine kinase binding1.81E-02
114GO:0004176: ATP-dependent peptidase activity1.94E-02
115GO:0016760: cellulose synthase (UDP-forming) activity2.20E-02
116GO:0003824: catalytic activity2.22E-02
117GO:0003756: protein disulfide isomerase activity2.33E-02
118GO:0004812: aminoacyl-tRNA ligase activity2.47E-02
119GO:0005102: receptor binding2.47E-02
120GO:0004402: histone acetyltransferase activity2.61E-02
121GO:0010181: FMN binding2.90E-02
122GO:0016491: oxidoreductase activity3.02E-02
123GO:0019901: protein kinase binding3.05E-02
124GO:0004872: receptor activity3.05E-02
125GO:0030170: pyridoxal phosphate binding3.16E-02
126GO:0048038: quinone binding3.20E-02
127GO:0019825: oxygen binding3.27E-02
128GO:0004518: nuclease activity3.35E-02
129GO:0004672: protein kinase activity3.61E-02
130GO:0008483: transaminase activity3.83E-02
131GO:0005200: structural constituent of cytoskeleton3.83E-02
132GO:0016168: chlorophyll binding4.33E-02
133GO:0009931: calcium-dependent protein serine/threonine kinase activity4.50E-02
134GO:0004683: calmodulin-dependent protein kinase activity4.67E-02
135GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.84E-02
136GO:0008236: serine-type peptidase activity4.84E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast2.82E-44
5GO:0009535: chloroplast thylakoid membrane2.71E-20
6GO:0009570: chloroplast stroma2.60E-18
7GO:0009941: chloroplast envelope2.89E-17
8GO:0010319: stromule2.20E-09
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.63E-09
10GO:0009543: chloroplast thylakoid lumen3.88E-09
11GO:0009579: thylakoid4.13E-06
12GO:0009534: chloroplast thylakoid4.31E-06
13GO:0009654: photosystem II oxygen evolving complex6.03E-06
14GO:0048046: apoplast2.04E-05
15GO:0031969: chloroplast membrane3.25E-05
16GO:0005759: mitochondrial matrix3.47E-05
17GO:0005960: glycine cleavage complex3.65E-05
18GO:0030095: chloroplast photosystem II7.60E-05
19GO:0009782: photosystem I antenna complex3.19E-04
20GO:0019898: extrinsic component of membrane4.01E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex6.97E-04
22GO:0045254: pyruvate dehydrogenase complex6.97E-04
23GO:0010287: plastoglobule9.48E-04
24GO:0031977: thylakoid lumen1.63E-03
25GO:0055035: plastid thylakoid membrane2.78E-03
26GO:0009706: chloroplast inner membrane4.15E-03
27GO:0031359: integral component of chloroplast outer membrane4.87E-03
28GO:0016020: membrane5.51E-03
29GO:0005623: cell5.72E-03
30GO:0009539: photosystem II reaction center6.49E-03
31GO:0005779: integral component of peroxisomal membrane6.49E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex6.49E-03
33GO:0009707: chloroplast outer membrane7.19E-03
34GO:0045298: tubulin complex7.36E-03
35GO:0016324: apical plasma membrane9.22E-03
36GO:0005819: spindle9.96E-03
37GO:0009508: plastid chromosome1.23E-02
38GO:0030076: light-harvesting complex1.45E-02
39GO:0005758: mitochondrial intermembrane space1.69E-02
40GO:0042651: thylakoid membrane1.81E-02
41GO:0022626: cytosolic ribosome1.82E-02
42GO:0005874: microtubule1.83E-02
43GO:0009532: plastid stroma1.94E-02
44GO:0005777: peroxisome2.39E-02
45GO:0005871: kinesin complex2.47E-02
46GO:0005829: cytosol2.54E-02
47GO:0009536: plastid2.68E-02
48GO:0009524: phragmoplast3.00E-02
49GO:0009504: cell plate3.05E-02
50GO:0009523: photosystem II3.05E-02
51GO:0005886: plasma membrane3.20E-02
52GO:0005694: chromosome3.35E-02
53GO:0009295: nucleoid3.83E-02
54GO:0005778: peroxisomal membrane3.83E-02
55GO:0016021: integral component of membrane3.90E-02
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Gene type



Gene DE type