co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071327: cellular response to trehalose stimulus	0.00E+00
2	GO:0015690: aluminum cation transport	0.00E+00
3	GO:1900367: positive regulation of defense response to insect	0.00E+00
4	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
5	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
6	GO:0009617: response to bacterium	1.25E-16
7	GO:0009626: plant-type hypersensitive response	7.38E-09
8	GO:0080142: regulation of salicylic acid biosynthetic process	6.54E-08
9	GO:0010618: aerenchyma formation	1.05E-06
10	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.05E-06
11	GO:0006952: defense response	2.30E-06
12	GO:0010112: regulation of systemic acquired resistance	2.73E-06
13	GO:0072661: protein targeting to plasma membrane	3.92E-06
14	GO:0009816: defense response to bacterium, incompatible interaction	8.27E-06
15	GO:0009627: systemic acquired resistance	9.28E-06
16	GO:0042343: indole glucosinolate metabolic process	1.57E-05
17	GO:0000162: tryptophan biosynthetic process	1.89E-05
18	GO:0042742: defense response to bacterium	2.30E-05
19	GO:0009697: salicylic acid biosynthetic process	2.79E-05
20	GO:0051707: response to other organism	3.50E-05
21	GO:0031348: negative regulation of defense response	3.60E-05
22	GO:0071456: cellular response to hypoxia	3.60E-05
23	GO:0010942: positive regulation of cell death	4.18E-05
24	GO:0010310: regulation of hydrogen peroxide metabolic process	5.87E-05
25	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.02E-04
26	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.27E-04
27	GO:0010120: camalexin biosynthetic process	1.27E-04
28	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.46E-04
29	GO:0051245: negative regulation of cellular defense response	1.46E-04
30	GO:0009609: response to symbiotic bacterium	1.46E-04
31	GO:0009700: indole phytoalexin biosynthetic process	1.46E-04
32	GO:0010230: alternative respiration	1.46E-04
33	GO:0055081: anion homeostasis	1.46E-04
34	GO:0046244: salicylic acid catabolic process	1.46E-04
35	GO:1901183: positive regulation of camalexin biosynthetic process	1.46E-04
36	GO:0006083: acetate metabolic process	1.46E-04
37	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.46E-04
38	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.88E-04
39	GO:1900426: positive regulation of defense response to bacterium	1.88E-04
40	GO:0043069: negative regulation of programmed cell death	2.22E-04
41	GO:0009682: induced systemic resistance	2.59E-04
42	GO:0009751: response to salicylic acid	2.66E-04
43	GO:0002213: defense response to insect	2.99E-04
44	GO:0010150: leaf senescence	3.00E-04
45	GO:0031349: positive regulation of defense response	3.33E-04
46	GO:0002237: response to molecule of bacterial origin	3.85E-04
47	GO:0070588: calcium ion transmembrane transport	4.32E-04
48	GO:0009863: salicylic acid mediated signaling pathway	5.33E-04
49	GO:0080147: root hair cell development	5.33E-04
50	GO:0006011: UDP-glucose metabolic process	5.47E-04
51	GO:0055074: calcium ion homeostasis	5.47E-04
52	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	5.47E-04
53	GO:0009814: defense response, incompatible interaction	7.02E-04
54	GO:0009625: response to insect	7.64E-04
55	GO:0002239: response to oomycetes	7.83E-04
56	GO:0043207: response to external biotic stimulus	7.83E-04
57	GO:0010148: transpiration	7.83E-04
58	GO:0006612: protein targeting to membrane	7.83E-04
59	GO:0048530: fruit morphogenesis	7.83E-04
60	GO:0000187: activation of MAPK activity	7.83E-04
61	GO:0019438: aromatic compound biosynthetic process	7.83E-04
62	GO:0009611: response to wounding	8.04E-04
63	GO:0009620: response to fungus	9.03E-04
64	GO:0009652: thigmotropism	1.04E-03
65	GO:0045088: regulation of innate immune response	1.04E-03
66	GO:0010363: regulation of plant-type hypersensitive response	1.04E-03
67	GO:0010600: regulation of auxin biosynthetic process	1.04E-03
68	GO:0071219: cellular response to molecule of bacterial origin	1.04E-03
69	GO:0000003: reproduction	1.04E-03
70	GO:1901141: regulation of lignin biosynthetic process	1.04E-03
71	GO:0009646: response to absence of light	1.11E-03
72	GO:0002229: defense response to oomycetes	1.27E-03
73	GO:0010225: response to UV-C	1.31E-03
74	GO:0000304: response to singlet oxygen	1.31E-03
75	GO:0006090: pyruvate metabolic process	1.31E-03
76	GO:0046283: anthocyanin-containing compound metabolic process	1.31E-03
77	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.61E-03
78	GO:0060918: auxin transport	1.61E-03
79	GO:0003006: developmental process involved in reproduction	1.61E-03
80	GO:0009759: indole glucosinolate biosynthetic process	1.61E-03
81	GO:0050832: defense response to fungus	1.75E-03
82	GO:0001666: response to hypoxia	1.81E-03
83	GO:0019509: L-methionine salvage from methylthioadenosine	1.93E-03
84	GO:0009612: response to mechanical stimulus	1.93E-03
85	GO:0010199: organ boundary specification between lateral organs and the meristem	1.93E-03
86	GO:0006906: vesicle fusion	2.02E-03
87	GO:0009610: response to symbiotic fungus	2.27E-03
88	GO:0071446: cellular response to salicylic acid stimulus	2.27E-03
89	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.27E-03
90	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.63E-03
91	GO:0043068: positive regulation of programmed cell death	2.63E-03
92	GO:0006605: protein targeting	2.63E-03
93	GO:0031540: regulation of anthocyanin biosynthetic process	2.63E-03
94	GO:0006102: isocitrate metabolic process	2.63E-03
95	GO:0006979: response to oxidative stress	2.69E-03
96	GO:0009737: response to abscisic acid	2.95E-03
97	GO:0009699: phenylpropanoid biosynthetic process	3.00E-03
98	GO:0010497: plasmodesmata-mediated intercellular transport	3.00E-03
99	GO:0010262: somatic embryogenesis	3.00E-03
100	GO:0010204: defense response signaling pathway, resistance gene-independent	3.00E-03
101	GO:0043562: cellular response to nitrogen levels	3.00E-03
102	GO:0006099: tricarboxylic acid cycle	3.11E-03
103	GO:0006887: exocytosis	3.53E-03
104	GO:0048268: clathrin coat assembly	3.81E-03
105	GO:2000280: regulation of root development	3.81E-03
106	GO:0006032: chitin catabolic process	4.23E-03
107	GO:0080167: response to karrikin	4.56E-03
108	GO:0052544: defense response by callose deposition in cell wall	4.67E-03
109	GO:0000272: polysaccharide catabolic process	4.67E-03
110	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.13E-03
111	GO:0010224: response to UV-B	5.33E-03
112	GO:0006108: malate metabolic process	5.60E-03
113	GO:0006886: intracellular protein transport	5.97E-03
114	GO:0006508: proteolysis	6.05E-03
115	GO:0009266: response to temperature stimulus	6.09E-03
116	GO:0010039: response to iron ion	6.59E-03
117	GO:0009624: response to nematode	7.32E-03
118	GO:0009116: nucleoside metabolic process	7.63E-03
119	GO:0098542: defense response to other organism	8.73E-03
120	GO:0048278: vesicle docking	8.73E-03
121	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
122	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.30E-03
123	GO:0019748: secondary metabolic process	9.30E-03
124	GO:0009411: response to UV	9.89E-03
125	GO:0001944: vasculature development	9.89E-03
126	GO:0070417: cellular response to cold	1.11E-02
127	GO:0042391: regulation of membrane potential	1.17E-02
128	GO:0010501: RNA secondary structure unwinding	1.17E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	1.17E-02
130	GO:0010051: xylem and phloem pattern formation	1.17E-02
131	GO:0055114: oxidation-reduction process	1.25E-02
132	GO:0061025: membrane fusion	1.30E-02
133	GO:0055072: iron ion homeostasis	1.37E-02
134	GO:0009851: auxin biosynthetic process	1.37E-02
135	GO:0006468: protein phosphorylation	1.38E-02
136	GO:0000302: response to reactive oxygen species	1.43E-02
137	GO:0006891: intra-Golgi vesicle-mediated transport	1.43E-02
138	GO:0009409: response to cold	1.62E-02
139	GO:0019760: glucosinolate metabolic process	1.64E-02
140	GO:0051607: defense response to virus	1.79E-02
141	GO:0009615: response to virus	1.86E-02
142	GO:0046686: response to cadmium ion	2.00E-02
143	GO:0008219: cell death	2.25E-02
144	GO:0009723: response to ethylene	2.28E-02
145	GO:0010311: lateral root formation	2.33E-02
146	GO:0009407: toxin catabolic process	2.41E-02
147	GO:0006811: ion transport	2.41E-02
148	GO:0048527: lateral root development	2.49E-02
149	GO:0009631: cold acclimation	2.49E-02
150	GO:0010119: regulation of stomatal movement	2.49E-02
151	GO:0010200: response to chitin	2.53E-02
152	GO:0016192: vesicle-mediated transport	2.57E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	2.66E-02
154	GO:0045087: innate immune response	2.66E-02
155	GO:0006897: endocytosis	3.01E-02
156	GO:0006631: fatty acid metabolic process	3.01E-02
157	GO:0007165: signal transduction	3.07E-02
158	GO:0042542: response to hydrogen peroxide	3.10E-02
159	GO:0009636: response to toxic substance	3.47E-02
160	GO:0006855: drug transmembrane transport	3.56E-02
161	GO:0006629: lipid metabolic process	3.60E-02
162	GO:0031347: regulation of defense response	3.65E-02
163	GO:0000165: MAPK cascade	3.65E-02
164	GO:0009846: pollen germination	3.75E-02
165	GO:0006857: oligopeptide transport	4.14E-02
166	GO:0009909: regulation of flower development	4.24E-02
167	GO:0048316: seed development	4.54E-02
168	GO:0009553: embryo sac development	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
4	GO:0004656: procollagen-proline 4-dioxygenase activity	5.87E-05
5	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.46E-04
6	GO:0003987: acetate-CoA ligase activity	1.46E-04
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.46E-04
8	GO:0004048: anthranilate phosphoribosyltransferase activity	1.46E-04
9	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.46E-04
10	GO:0008782: adenosylhomocysteine nucleosidase activity	1.46E-04
11	GO:0008930: methylthioadenosine nucleosidase activity	1.46E-04
12	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.21E-04
13	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.33E-04
14	GO:0051980: iron-nicotianamine transmembrane transporter activity	3.33E-04
15	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.33E-04
16	GO:0005388: calcium-transporting ATPase activity	3.41E-04
17	GO:0005516: calmodulin binding	3.63E-04
18	GO:0004148: dihydrolipoyl dehydrogenase activity	5.47E-04
19	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	5.47E-04
20	GO:0004049: anthranilate synthase activity	5.47E-04
21	GO:0051287: NAD binding	5.69E-04
22	GO:0035529: NADH pyrophosphatase activity	7.83E-04
23	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.83E-04
24	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.04E-03
25	GO:0004470: malic enzyme activity	1.04E-03
26	GO:0043495: protein anchor	1.04E-03
27	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.04E-03
28	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.21E-03
29	GO:0047631: ADP-ribose diphosphatase activity	1.31E-03
30	GO:0005507: copper ion binding	1.43E-03
31	GO:0000210: NAD+ diphosphatase activity	1.61E-03
32	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.61E-03
33	GO:0016208: AMP binding	1.61E-03
34	GO:0008565: protein transporter activity	1.67E-03
35	GO:0005524: ATP binding	1.91E-03
36	GO:0004806: triglyceride lipase activity	2.13E-03
37	GO:0016301: kinase activity	2.24E-03
38	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.27E-03
39	GO:0005506: iron ion binding	2.58E-03
40	GO:0004708: MAP kinase kinase activity	2.63E-03
41	GO:0004564: beta-fructofuranosidase activity	2.63E-03
42	GO:0050897: cobalt ion binding	2.72E-03
43	GO:0000149: SNARE binding	3.25E-03
44	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.81E-03
45	GO:0004575: sucrose alpha-glucosidase activity	3.81E-03
46	GO:0005484: SNAP receptor activity	3.83E-03
47	GO:0008171: O-methyltransferase activity	4.23E-03
48	GO:0005545: 1-phosphatidylinositol binding	4.23E-03
49	GO:0004568: chitinase activity	4.23E-03
50	GO:0008559: xenobiotic-transporting ATPase activity	4.67E-03
51	GO:0015198: oligopeptide transporter activity	5.13E-03
52	GO:0004674: protein serine/threonine kinase activity	5.27E-03
53	GO:0016298: lipase activity	5.33E-03
54	GO:0005262: calcium channel activity	5.60E-03
55	GO:0015095: magnesium ion transmembrane transporter activity	5.60E-03
56	GO:0019825: oxygen binding	6.02E-03
57	GO:0030552: cAMP binding	6.59E-03
58	GO:0004867: serine-type endopeptidase inhibitor activity	6.59E-03
59	GO:0030553: cGMP binding	6.59E-03
60	GO:0008061: chitin binding	6.59E-03
61	GO:0004190: aspartic-type endopeptidase activity	6.59E-03
62	GO:0031418: L-ascorbic acid binding	7.63E-03
63	GO:0005216: ion channel activity	8.18E-03
64	GO:0016779: nucleotidyltransferase activity	9.30E-03
65	GO:0030551: cyclic nucleotide binding	1.17E-02
66	GO:0005249: voltage-gated potassium channel activity	1.17E-02
67	GO:0030276: clathrin binding	1.24E-02
68	GO:0004197: cysteine-type endopeptidase activity	1.50E-02
69	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.72E-02
70	GO:0051213: dioxygenase activity	1.86E-02
71	GO:0008375: acetylglucosaminyltransferase activity	2.01E-02
72	GO:0020037: heme binding	2.04E-02
73	GO:0004004: ATP-dependent RNA helicase activity	2.09E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-02
75	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.17E-02
76	GO:0015238: drug transmembrane transporter activity	2.33E-02
77	GO:0004222: metalloendopeptidase activity	2.41E-02
78	GO:0030145: manganese ion binding	2.49E-02
79	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.75E-02
80	GO:0004871: signal transducer activity	3.06E-02
81	GO:0042803: protein homodimerization activity	3.06E-02
82	GO:0004364: glutathione transferase activity	3.10E-02
83	GO:0005509: calcium ion binding	3.39E-02
84	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.56E-02
85	GO:0031625: ubiquitin protein ligase binding	4.24E-02
86	GO:0045735: nutrient reservoir activity	4.44E-02
87	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.75E-02
88	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.75E-05
2	GO:0005950: anthranilate synthase complex	3.33E-04
3	GO:0005901: caveola	3.33E-04
4	GO:0005750: mitochondrial respiratory chain complex III	3.85E-04
5	GO:0005774: vacuolar membrane	7.68E-04
6	GO:0030660: Golgi-associated vesicle membrane	1.04E-03
7	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.04E-03
8	GO:0009504: cell plate	1.19E-03
9	GO:0016021: integral component of membrane	1.27E-03
10	GO:0000164: protein phosphatase type 1 complex	1.31E-03
11	GO:0005783: endoplasmic reticulum	1.43E-03
12	GO:0031225: anchored component of membrane	1.67E-03
13	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.63E-03
14	GO:0009514: glyoxysome	3.00E-03
15	GO:0031901: early endosome membrane	3.40E-03
16	GO:0031201: SNARE complex	3.53E-03
17	GO:0005740: mitochondrial envelope	4.23E-03
18	GO:0005829: cytosol	4.64E-03
19	GO:0005765: lysosomal membrane	4.67E-03
20	GO:0031012: extracellular matrix	5.60E-03
21	GO:0005795: Golgi stack	6.59E-03
22	GO:0005769: early endosome	7.10E-03
23	GO:0048046: apoplast	8.41E-03
24	GO:0005741: mitochondrial outer membrane	8.73E-03
25	GO:0005905: clathrin-coated pit	8.73E-03
26	GO:0005623: cell	9.42E-03
27	GO:0005576: extracellular region	9.46E-03
28	GO:0005618: cell wall	9.94E-03
29	GO:0005887: integral component of plasma membrane	1.10E-02
30	GO:0030136: clathrin-coated vesicle	1.11E-02
31	GO:0046658: anchored component of plasma membrane	1.68E-02
32	GO:0009506: plasmodesma	1.78E-02
33	GO:0005788: endoplasmic reticulum lumen	1.94E-02
34	GO:0000151: ubiquitin ligase complex	2.25E-02
35	GO:0005643: nuclear pore	2.25E-02
36	GO:0000325: plant-type vacuole	2.49E-02
37	GO:0005622: intracellular	3.19E-02
38	GO:0005747: mitochondrial respiratory chain complex I	4.54E-02