Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G57660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0070979: protein K11-linked ubiquitination0.00E+00
3GO:0010378: temperature compensation of the circadian clock0.00E+00
4GO:0009768: photosynthesis, light harvesting in photosystem I1.01E-15
5GO:0018298: protein-chromophore linkage4.40E-11
6GO:0010218: response to far red light6.03E-09
7GO:0009769: photosynthesis, light harvesting in photosystem II4.50E-08
8GO:0009645: response to low light intensity stimulus4.50E-08
9GO:0015979: photosynthesis1.34E-07
10GO:0010114: response to red light1.15E-06
11GO:0009644: response to high light intensity1.36E-06
12GO:0010600: regulation of auxin biosynthetic process2.14E-06
13GO:0010244: response to low fluence blue light stimulus by blue low-fluence system8.18E-06
14GO:0010928: regulation of auxin mediated signaling pathway1.51E-05
15GO:0009416: response to light stimulus2.86E-05
16GO:0009637: response to blue light3.03E-05
17GO:0015812: gamma-aminobutyric acid transport4.31E-05
18GO:1990641: response to iron ion starvation4.31E-05
19GO:0009585: red, far-red light phototransduction7.15E-05
20GO:0051170: nuclear import1.07E-04
21GO:0006101: citrate metabolic process1.07E-04
22GO:0003333: amino acid transmembrane transport1.24E-04
23GO:0048511: rhythmic process1.24E-04
24GO:0010017: red or far-red light signaling pathway1.37E-04
25GO:0045165: cell fate commitment1.84E-04
26GO:1902448: positive regulation of shade avoidance1.84E-04
27GO:0031145: anaphase-promoting complex-dependent catabolic process1.84E-04
28GO:0009409: response to cold2.42E-04
29GO:0007623: circadian rhythm2.57E-04
30GO:0030071: regulation of mitotic metaphase/anaphase transition2.70E-04
31GO:0044211: CTP salvage2.70E-04
32GO:0009765: photosynthesis, light harvesting3.64E-04
33GO:0044206: UMP salvage3.64E-04
34GO:0015846: polyamine transport3.64E-04
35GO:0030104: water homeostasis3.64E-04
36GO:0009957: epidermal cell fate specification4.63E-04
37GO:0048578: positive regulation of long-day photoperiodism, flowering4.63E-04
38GO:0032876: negative regulation of DNA endoreduplication4.63E-04
39GO:0043097: pyrimidine nucleoside salvage4.63E-04
40GO:0000160: phosphorelay signal transduction system5.22E-04
41GO:0009635: response to herbicide5.67E-04
42GO:0006206: pyrimidine nucleobase metabolic process5.67E-04
43GO:0080167: response to karrikin5.97E-04
44GO:0042542: response to hydrogen peroxide7.67E-04
45GO:0032880: regulation of protein localization7.90E-04
46GO:0010161: red light signaling pathway7.90E-04
47GO:0009640: photomorphogenesis7.97E-04
48GO:0009704: de-etiolation9.08E-04
49GO:0032875: regulation of DNA endoreduplication9.08E-04
50GO:0006102: isocitrate metabolic process9.08E-04
51GO:0010099: regulation of photomorphogenesis1.03E-03
52GO:0009827: plant-type cell wall modification1.03E-03
53GO:0090333: regulation of stomatal closure1.16E-03
54GO:0048354: mucilage biosynthetic process involved in seed coat development1.29E-03
55GO:0009641: shade avoidance1.43E-03
56GO:0009970: cellular response to sulfate starvation1.43E-03
57GO:0006535: cysteine biosynthetic process from serine1.43E-03
58GO:0018107: peptidyl-threonine phosphorylation1.87E-03
59GO:0009718: anthocyanin-containing compound biosynthetic process1.87E-03
60GO:0009266: response to temperature stimulus2.03E-03
61GO:0090351: seedling development2.19E-03
62GO:0019344: cysteine biosynthetic process2.52E-03
63GO:0010026: trichome differentiation2.70E-03
64GO:0009269: response to desiccation2.88E-03
65GO:0009693: ethylene biosynthetic process3.24E-03
66GO:0071215: cellular response to abscisic acid stimulus3.24E-03
67GO:0010087: phloem or xylem histogenesis3.82E-03
68GO:0006814: sodium ion transport4.23E-03
69GO:0042752: regulation of circadian rhythm4.23E-03
70GO:0000302: response to reactive oxygen species4.64E-03
71GO:1901657: glycosyl compound metabolic process5.07E-03
72GO:0044550: secondary metabolite biosynthetic process5.22E-03
73GO:0045892: negative regulation of transcription, DNA-templated5.84E-03
74GO:0048573: photoperiodism, flowering6.69E-03
75GO:0015995: chlorophyll biosynthetic process6.69E-03
76GO:0010119: regulation of stomatal movement7.95E-03
77GO:0006099: tricarboxylic acid cycle8.74E-03
78GO:0008283: cell proliferation1.01E-02
79GO:0008643: carbohydrate transport1.07E-02
80GO:0009737: response to abscisic acid1.25E-02
81GO:0035556: intracellular signal transduction1.33E-02
82GO:0009624: response to nematode1.60E-02
83GO:0006457: protein folding1.63E-02
84GO:0018105: peptidyl-serine phosphorylation1.64E-02
85GO:0009058: biosynthetic process1.95E-02
86GO:0055114: oxidation-reduction process2.08E-02
87GO:0009651: response to salt stress2.22E-02
88GO:0010228: vegetative to reproductive phase transition of meristem2.44E-02
89GO:0006355: regulation of transcription, DNA-templated2.63E-02
90GO:0006351: transcription, DNA-templated2.63E-02
91GO:0010468: regulation of gene expression2.68E-02
92GO:0009658: chloroplast organization3.22E-02
93GO:0009723: response to ethylene3.58E-02
94GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.85E-02
95GO:0005975: carbohydrate metabolic process3.87E-02
96GO:0006629: lipid metabolic process4.95E-02
RankGO TermAdjusted P value
1GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
2GO:0047668: amygdalin beta-glucosidase activity0.00E+00
3GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
4GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
5GO:0004567: beta-mannosidase activity0.00E+00
6GO:0080082: esculin beta-glucosidase activity0.00E+00
7GO:0031409: pigment binding4.23E-16
8GO:0016168: chlorophyll binding1.52E-13
9GO:0080079: cellobiose glucosidase activity4.31E-05
10GO:0015185: gamma-aminobutyric acid transmembrane transporter activity4.31E-05
11GO:0015180: L-alanine transmembrane transporter activity1.07E-04
12GO:0003994: aconitate hydratase activity1.07E-04
13GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.72E-04
14GO:0015297: antiporter activity2.42E-04
15GO:0009001: serine O-acetyltransferase activity2.70E-04
16GO:0015189: L-lysine transmembrane transporter activity2.70E-04
17GO:0048027: mRNA 5'-UTR binding2.70E-04
18GO:0015181: arginine transmembrane transporter activity2.70E-04
19GO:0015203: polyamine transmembrane transporter activity2.70E-04
20GO:0000156: phosphorelay response regulator activity3.02E-04
21GO:0004845: uracil phosphoribosyltransferase activity3.64E-04
22GO:0005313: L-glutamate transmembrane transporter activity3.64E-04
23GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen4.63E-04
24GO:0004497: monooxygenase activity5.97E-04
25GO:0004849: uridine kinase activity6.76E-04
26GO:0015293: symporter activity8.91E-04
27GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.16E-03
28GO:0000989: transcription factor activity, transcription factor binding1.16E-03
29GO:0015174: basic amino acid transmembrane transporter activity1.29E-03
30GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.43E-03
31GO:0047372: acylglycerol lipase activity1.57E-03
32GO:0005315: inorganic phosphate transmembrane transporter activity1.87E-03
33GO:0004565: beta-galactosidase activity1.87E-03
34GO:0004022: alcohol dehydrogenase (NAD) activity1.87E-03
35GO:0003712: transcription cofactor activity2.19E-03
36GO:0004707: MAP kinase activity2.88E-03
37GO:0019825: oxygen binding3.07E-03
38GO:0008514: organic anion transmembrane transporter activity3.43E-03
39GO:0005515: protein binding3.77E-03
40GO:0046872: metal ion binding3.82E-03
41GO:0005506: iron ion binding4.70E-03
42GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.20E-03
43GO:0102483: scopolin beta-glucosidase activity6.69E-03
44GO:0020037: heme binding8.55E-03
45GO:0008422: beta-glucosidase activity9.01E-03
46GO:0051539: 4 iron, 4 sulfur cluster binding9.28E-03
47GO:0005198: structural molecule activity1.10E-02
48GO:0015171: amino acid transmembrane transporter activity1.34E-02
49GO:0022857: transmembrane transporter activity1.54E-02
50GO:0015144: carbohydrate transmembrane transporter activity2.13E-02
51GO:0005351: sugar:proton symporter activity2.32E-02
52GO:0046983: protein dimerization activity3.41E-02
53GO:0004674: protein serine/threonine kinase activity3.59E-02
54GO:0004672: protein kinase activity3.75E-02
55GO:0003924: GTPase activity4.95E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex9.51E-14
2GO:0010287: plastoglobule7.03E-13
3GO:0009522: photosystem I3.13E-12
4GO:0009523: photosystem II6.10E-10
5GO:0009579: thylakoid5.57E-09
6GO:0009534: chloroplast thylakoid1.45E-07
7GO:0009535: chloroplast thylakoid membrane1.02E-06
8GO:0009941: chloroplast envelope1.05E-04
9GO:0042651: thylakoid membrane1.12E-04
10GO:0016021: integral component of membrane3.17E-04
11GO:0009517: PSII associated light-harvesting complex II3.64E-04
12GO:0016020: membrane4.23E-04
13GO:0005680: anaphase-promoting complex1.16E-03
14GO:0016604: nuclear body1.29E-03
15GO:0009507: chloroplast4.70E-03
16GO:0005887: integral component of plasma membrane9.61E-03
17GO:0031966: mitochondrial membrane1.19E-02
18GO:0016607: nuclear speck1.44E-02
19GO:0005654: nucleoplasm1.84E-02
20GO:0005623: cell1.91E-02
21GO:0005774: vacuolar membrane2.31E-02
22GO:0005618: cell wall2.74E-02
23GO:0009505: plant-type cell wall3.20E-02
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Gene type



Gene DE type