Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G57170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
4GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0015670: carbon dioxide transport0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I5.37E-15
12GO:0015979: photosynthesis5.45E-07
13GO:0010027: thylakoid membrane organization3.74E-06
14GO:0030388: fructose 1,6-bisphosphate metabolic process4.70E-06
15GO:0006000: fructose metabolic process1.67E-05
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.71E-05
17GO:0006094: gluconeogenesis6.40E-05
18GO:0010207: photosystem II assembly7.75E-05
19GO:0016120: carotene biosynthetic process1.04E-04
20GO:0010444: guard mother cell differentiation2.67E-04
21GO:0030974: thiamine pyrophosphate transport3.22E-04
22GO:0043953: protein transport by the Tat complex3.22E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process3.22E-04
24GO:0051775: response to redox state3.22E-04
25GO:0071277: cellular response to calcium ion3.22E-04
26GO:0000481: maturation of 5S rRNA3.22E-04
27GO:1904964: positive regulation of phytol biosynthetic process3.22E-04
28GO:0065002: intracellular protein transmembrane transport3.22E-04
29GO:0043686: co-translational protein modification3.22E-04
30GO:1902458: positive regulation of stomatal opening3.22E-04
31GO:0034337: RNA folding3.22E-04
32GO:0051180: vitamin transport3.22E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
34GO:0009642: response to light intensity3.36E-04
35GO:0008610: lipid biosynthetic process3.36E-04
36GO:0032544: plastid translation4.12E-04
37GO:0006002: fructose 6-phosphate metabolic process4.12E-04
38GO:0055114: oxidation-reduction process5.06E-04
39GO:0006810: transport5.06E-04
40GO:0010205: photoinhibition5.85E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process7.02E-04
42GO:0080005: photosystem stoichiometry adjustment7.02E-04
43GO:0010115: regulation of abscisic acid biosynthetic process7.02E-04
44GO:0015893: drug transport7.02E-04
45GO:0034755: iron ion transmembrane transport7.02E-04
46GO:0097054: L-glutamate biosynthetic process7.02E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process7.02E-04
48GO:0009750: response to fructose7.88E-04
49GO:0018298: protein-chromophore linkage9.92E-04
50GO:0005986: sucrose biosynthetic process1.02E-03
51GO:0031022: nuclear migration along microfilament1.14E-03
52GO:0009735: response to cytokinin1.32E-03
53GO:0006636: unsaturated fatty acid biosynthetic process1.42E-03
54GO:0006833: water transport1.42E-03
55GO:0055070: copper ion homeostasis1.63E-03
56GO:0046836: glycolipid transport1.63E-03
57GO:0010371: regulation of gibberellin biosynthetic process1.63E-03
58GO:0071484: cellular response to light intensity1.63E-03
59GO:0009152: purine ribonucleotide biosynthetic process1.63E-03
60GO:0046653: tetrahydrofolate metabolic process1.63E-03
61GO:0006107: oxaloacetate metabolic process1.63E-03
62GO:0080170: hydrogen peroxide transmembrane transport1.63E-03
63GO:0006537: glutamate biosynthetic process1.63E-03
64GO:0009644: response to high light intensity2.03E-03
65GO:0006734: NADH metabolic process2.19E-03
66GO:0019676: ammonia assimilation cycle2.19E-03
67GO:0009765: photosynthesis, light harvesting2.19E-03
68GO:0006109: regulation of carbohydrate metabolic process2.19E-03
69GO:0045727: positive regulation of translation2.19E-03
70GO:0015994: chlorophyll metabolic process2.19E-03
71GO:0006364: rRNA processing2.69E-03
72GO:0010117: photoprotection2.80E-03
73GO:0006564: L-serine biosynthetic process2.80E-03
74GO:0009904: chloroplast accumulation movement2.80E-03
75GO:0045038: protein import into chloroplast thylakoid membrane2.80E-03
76GO:0031365: N-terminal protein amino acid modification2.80E-03
77GO:0035434: copper ion transmembrane transport2.80E-03
78GO:0034220: ion transmembrane transport2.89E-03
79GO:0010182: sugar mediated signaling pathway3.12E-03
80GO:0009658: chloroplast organization3.32E-03
81GO:0010190: cytochrome b6f complex assembly3.46E-03
82GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.46E-03
83GO:0032973: amino acid export3.46E-03
84GO:0018258: protein O-linked glycosylation via hydroxyproline3.46E-03
85GO:0006561: proline biosynthetic process3.46E-03
86GO:0010405: arabinogalactan protein metabolic process3.46E-03
87GO:0042549: photosystem II stabilization3.46E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
89GO:0000470: maturation of LSU-rRNA3.46E-03
90GO:0009913: epidermal cell differentiation3.46E-03
91GO:0016554: cytidine to uridine editing3.46E-03
92GO:0006655: phosphatidylglycerol biosynthetic process3.46E-03
93GO:0009903: chloroplast avoidance movement4.17E-03
94GO:0071333: cellular response to glucose stimulus4.17E-03
95GO:0010196: nonphotochemical quenching4.92E-03
96GO:0009645: response to low light intensity stimulus4.92E-03
97GO:0006400: tRNA modification4.92E-03
98GO:0006401: RNA catabolic process4.92E-03
99GO:0009395: phospholipid catabolic process4.92E-03
100GO:0043090: amino acid import4.92E-03
101GO:0016126: sterol biosynthetic process5.57E-03
102GO:0006605: protein targeting5.71E-03
103GO:0009704: de-etiolation5.71E-03
104GO:0032508: DNA duplex unwinding5.71E-03
105GO:2000070: regulation of response to water deprivation5.71E-03
106GO:0009231: riboflavin biosynthetic process5.71E-03
107GO:0007186: G-protein coupled receptor signaling pathway6.55E-03
108GO:0071482: cellular response to light stimulus6.55E-03
109GO:0015996: chlorophyll catabolic process6.55E-03
110GO:0080144: amino acid homeostasis7.42E-03
111GO:0090333: regulation of stomatal closure7.42E-03
112GO:0000373: Group II intron splicing7.42E-03
113GO:0009051: pentose-phosphate shunt, oxidative branch7.42E-03
114GO:0009821: alkaloid biosynthetic process7.42E-03
115GO:0006098: pentose-phosphate shunt7.42E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis7.42E-03
117GO:0009638: phototropism8.34E-03
118GO:1900865: chloroplast RNA modification8.34E-03
119GO:0055085: transmembrane transport8.66E-03
120GO:0009853: photorespiration9.22E-03
121GO:0009688: abscisic acid biosynthetic process9.30E-03
122GO:0008152: metabolic process9.66E-03
123GO:0008285: negative regulation of cell proliferation1.03E-02
124GO:0043085: positive regulation of catalytic activity1.03E-02
125GO:0006879: cellular iron ion homeostasis1.03E-02
126GO:0000038: very long-chain fatty acid metabolic process1.03E-02
127GO:0005983: starch catabolic process1.13E-02
128GO:0016024: CDP-diacylglycerol biosynthetic process1.13E-02
129GO:0045037: protein import into chloroplast stroma1.13E-02
130GO:0009744: response to sucrose1.19E-02
131GO:0010628: positive regulation of gene expression1.24E-02
132GO:0006108: malate metabolic process1.24E-02
133GO:0006006: glucose metabolic process1.24E-02
134GO:0050826: response to freezing1.24E-02
135GO:0009718: anthocyanin-containing compound biosynthetic process1.24E-02
136GO:0009725: response to hormone1.24E-02
137GO:0009767: photosynthetic electron transport chain1.24E-02
138GO:0019253: reductive pentose-phosphate cycle1.35E-02
139GO:0005985: sucrose metabolic process1.46E-02
140GO:0010025: wax biosynthetic process1.58E-02
141GO:0009768: photosynthesis, light harvesting in photosystem I1.83E-02
142GO:0010073: meristem maintenance1.83E-02
143GO:0008299: isoprenoid biosynthetic process1.83E-02
144GO:0016575: histone deacetylation1.83E-02
145GO:0006096: glycolytic process1.91E-02
146GO:0031408: oxylipin biosynthetic process1.95E-02
147GO:0061077: chaperone-mediated protein folding1.95E-02
148GO:0009416: response to light stimulus1.98E-02
149GO:0035428: hexose transmembrane transport2.08E-02
150GO:0016226: iron-sulfur cluster assembly2.08E-02
151GO:0010227: floral organ abscission2.22E-02
152GO:0009561: megagametogenesis2.35E-02
153GO:0042127: regulation of cell proliferation2.35E-02
154GO:0009306: protein secretion2.35E-02
155GO:0006817: phosphate ion transport2.35E-02
156GO:0016117: carotenoid biosynthetic process2.49E-02
157GO:0042335: cuticle development2.63E-02
158GO:0006520: cellular amino acid metabolic process2.78E-02
159GO:0006662: glycerol ether metabolic process2.78E-02
160GO:0046323: glucose import2.78E-02
161GO:0015986: ATP synthesis coupled proton transport2.92E-02
162GO:0007018: microtubule-based movement2.92E-02
163GO:0009058: biosynthetic process3.03E-02
164GO:0009409: response to cold3.22E-02
165GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.23E-02
166GO:0016032: viral process3.38E-02
167GO:0009753: response to jasmonic acid3.44E-02
168GO:0006633: fatty acid biosynthetic process3.61E-02
169GO:0006413: translational initiation3.70E-02
170GO:0009567: double fertilization forming a zygote and endosperm3.70E-02
171GO:0005975: carbohydrate metabolic process3.89E-02
172GO:0007623: circadian rhythm3.96E-02
173GO:0001666: response to hypoxia4.19E-02
174GO:0042128: nitrate assimilation4.53E-02
175GO:0015995: chlorophyll biosynthetic process4.71E-02
176GO:0016311: dephosphorylation4.88E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
12GO:1990534: thermospermine oxidase activity0.00E+00
13GO:0045436: lycopene beta cyclase activity0.00E+00
14GO:0008859: exoribonuclease II activity0.00E+00
15GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.70E-06
19GO:0070402: NADPH binding1.67E-05
20GO:0004506: squalene monooxygenase activity6.61E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.61E-05
22GO:0042586: peptide deformylase activity3.22E-04
23GO:0045485: omega-6 fatty acid desaturase activity3.22E-04
24GO:0005080: protein kinase C binding3.22E-04
25GO:0008746: NAD(P)+ transhydrogenase activity3.22E-04
26GO:0016041: glutamate synthase (ferredoxin) activity3.22E-04
27GO:0004328: formamidase activity3.22E-04
28GO:0050139: nicotinate-N-glucosyltransferase activity3.22E-04
29GO:0090422: thiamine pyrophosphate transporter activity3.22E-04
30GO:0008967: phosphoglycolate phosphatase activity7.02E-04
31GO:0047746: chlorophyllase activity7.02E-04
32GO:0009977: proton motive force dependent protein transmembrane transporter activity7.02E-04
33GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
34GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.02E-04
35GO:0016168: chlorophyll binding7.64E-04
36GO:0004565: beta-galactosidase activity1.02E-03
37GO:0004022: alcohol dehydrogenase (NAD) activity1.02E-03
38GO:0031072: heat shock protein binding1.02E-03
39GO:0003935: GTP cyclohydrolase II activity1.14E-03
40GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.14E-03
41GO:0008864: formyltetrahydrofolate deformylase activity1.14E-03
42GO:0016531: copper chaperone activity1.14E-03
43GO:0019829: cation-transporting ATPase activity1.14E-03
44GO:0048487: beta-tubulin binding1.63E-03
45GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.63E-03
46GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.63E-03
47GO:0001872: (1->3)-beta-D-glucan binding1.63E-03
48GO:0017089: glycolipid transporter activity1.63E-03
49GO:0004176: ATP-dependent peptidase activity1.91E-03
50GO:0043495: protein anchor2.19E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.19E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity2.19E-03
53GO:0051861: glycolipid binding2.19E-03
54GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.19E-03
55GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
56GO:0005215: transporter activity2.51E-03
57GO:0051538: 3 iron, 4 sulfur cluster binding2.80E-03
58GO:0042578: phosphoric ester hydrolase activity3.46E-03
59GO:0016615: malate dehydrogenase activity3.46E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity3.46E-03
61GO:0004332: fructose-bisphosphate aldolase activity3.46E-03
62GO:0016491: oxidoreductase activity3.67E-03
63GO:0048038: quinone binding3.85E-03
64GO:0030060: L-malate dehydrogenase activity4.17E-03
65GO:0019899: enzyme binding4.92E-03
66GO:0004620: phospholipase activity4.92E-03
67GO:0016597: amino acid binding5.26E-03
68GO:0015250: water channel activity5.57E-03
69GO:0019843: rRNA binding5.61E-03
70GO:0004033: aldo-keto reductase (NADP) activity5.71E-03
71GO:0043022: ribosome binding5.71E-03
72GO:0005375: copper ion transmembrane transporter activity6.55E-03
73GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.55E-03
74GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.55E-03
75GO:0015078: hydrogen ion transmembrane transporter activity6.55E-03
76GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.42E-03
77GO:0016844: strictosidine synthase activity8.34E-03
78GO:0005381: iron ion transmembrane transporter activity8.34E-03
79GO:0008047: enzyme activator activity9.30E-03
80GO:0015386: potassium:proton antiporter activity1.03E-02
81GO:0044183: protein binding involved in protein folding1.03E-02
82GO:0016787: hydrolase activity1.05E-02
83GO:0008081: phosphoric diester hydrolase activity1.24E-02
84GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.24E-02
85GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
86GO:0000175: 3'-5'-exoribonuclease activity1.24E-02
87GO:0015293: symporter activity1.34E-02
88GO:0008131: primary amine oxidase activity1.35E-02
89GO:0008266: poly(U) RNA binding1.35E-02
90GO:0008146: sulfotransferase activity1.46E-02
91GO:0016788: hydrolase activity, acting on ester bonds1.51E-02
92GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.58E-02
93GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.58E-02
94GO:0031409: pigment binding1.58E-02
95GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.58E-02
96GO:0051536: iron-sulfur cluster binding1.70E-02
97GO:0004857: enzyme inhibitor activity1.70E-02
98GO:0004407: histone deacetylase activity1.70E-02
99GO:0005528: FK506 binding1.70E-02
100GO:0015079: potassium ion transmembrane transporter activity1.83E-02
101GO:0043424: protein histidine kinase binding1.83E-02
102GO:0004540: ribonuclease activity1.95E-02
103GO:0051082: unfolded protein binding2.30E-02
104GO:0016746: transferase activity, transferring acyl groups2.37E-02
105GO:0047134: protein-disulfide reductase activity2.49E-02
106GO:0050662: coenzyme binding2.92E-02
107GO:0004791: thioredoxin-disulfide reductase activity2.92E-02
108GO:0016853: isomerase activity2.92E-02
109GO:0005355: glucose transmembrane transporter activity2.92E-02
110GO:0030246: carbohydrate binding3.07E-02
111GO:0004872: receptor activity3.07E-02
112GO:0004518: nuclease activity3.38E-02
113GO:0000156: phosphorelay response regulator activity3.54E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.54E-02
115GO:0008483: transaminase activity3.86E-02
116GO:0046872: metal ion binding4.68E-02
117GO:0004721: phosphoprotein phosphatase activity4.71E-02
118GO:0030247: polysaccharide binding4.71E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast8.48E-50
4GO:0009535: chloroplast thylakoid membrane7.22E-30
5GO:0009570: chloroplast stroma2.53E-16
6GO:0009534: chloroplast thylakoid1.32E-14
7GO:0009941: chloroplast envelope2.66E-14
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.71E-09
9GO:0009579: thylakoid5.18E-09
10GO:0031969: chloroplast membrane3.09E-07
11GO:0009543: chloroplast thylakoid lumen1.44E-06
12GO:0016021: integral component of membrane6.42E-05
13GO:0042651: thylakoid membrane1.47E-04
14GO:0031361: integral component of thylakoid membrane3.22E-04
15GO:0009782: photosystem I antenna complex3.22E-04
16GO:0009528: plastid inner membrane1.14E-03
17GO:0033281: TAT protein transport complex1.14E-03
18GO:0009654: photosystem II oxygen evolving complex1.74E-03
19GO:0009527: plastid outer membrane2.19E-03
20GO:0000178: exosome (RNase complex)2.80E-03
21GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.46E-03
22GO:0009523: photosystem II3.60E-03
23GO:0019898: extrinsic component of membrane3.60E-03
24GO:0009706: chloroplast inner membrane4.21E-03
25GO:0010319: stromule4.95E-03
26GO:0010287: plastoglobule5.24E-03
27GO:0031977: thylakoid lumen1.10E-02
28GO:0032040: small-subunit processome1.13E-02
29GO:0046658: anchored component of plasma membrane1.21E-02
30GO:0048046: apoplast1.31E-02
31GO:0030076: light-harvesting complex1.46E-02
32GO:0009532: plastid stroma1.95E-02
33GO:0005871: kinesin complex2.49E-02
34GO:0005623: cell2.95E-02
35GO:0030529: intracellular ribonucleoprotein complex4.19E-02
36GO:0000932: P-body4.19E-02
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Gene type



Gene DE type