co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0034337: RNA folding	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0045176: apical protein localization	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	1.82E-11
9	GO:0015979: photosynthesis	4.37E-08
10	GO:0010027: thylakoid membrane organization	8.20E-07
11	GO:0010196: nonphotochemical quenching	1.45E-04
12	GO:0000481: maturation of 5S rRNA	2.16E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	2.16E-04
14	GO:0065002: intracellular protein transmembrane transport	2.16E-04
15	GO:0006106: fumarate metabolic process	2.16E-04
16	GO:1902458: positive regulation of stomatal opening	2.16E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	2.16E-04
18	GO:0043953: protein transport by the Tat complex	2.16E-04
19	GO:0071277: cellular response to calcium ion	2.16E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.16E-04
21	GO:0032544: plastid translation	2.29E-04
22	GO:0010205: photoinhibition	3.31E-04
23	GO:0009735: response to cytokinin	4.10E-04
24	GO:0018298: protein-chromophore linkage	4.80E-04
25	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.81E-04
26	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.81E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.81E-04
28	GO:0034755: iron ion transmembrane transport	4.81E-04
29	GO:0035304: regulation of protein dephosphorylation	4.81E-04
30	GO:0080005: photosystem stoichiometry adjustment	4.81E-04
31	GO:0009416: response to light stimulus	4.93E-04
32	GO:0010207: photosystem II assembly	6.57E-04
33	GO:0016050: vesicle organization	7.83E-04
34	GO:1902448: positive regulation of shade avoidance	7.83E-04
35	GO:0006000: fructose metabolic process	7.83E-04
36	GO:0090391: granum assembly	7.83E-04
37	GO:0006518: peptide metabolic process	7.83E-04
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.12E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.12E-03
40	GO:0080170: hydrogen peroxide transmembrane transport	1.12E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.12E-03
42	GO:1901332: negative regulation of lateral root development	1.12E-03
43	GO:0009306: protein secretion	1.40E-03
44	GO:0010021: amylopectin biosynthetic process	1.48E-03
45	GO:0010109: regulation of photosynthesis	1.48E-03
46	GO:0009765: photosynthesis, light harvesting	1.48E-03
47	GO:0045727: positive regulation of translation	1.48E-03
48	GO:0015994: chlorophyll metabolic process	1.48E-03
49	GO:0042335: cuticle development	1.63E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	1.89E-03
51	GO:0032543: mitochondrial translation	1.89E-03
52	GO:0006564: L-serine biosynthetic process	1.89E-03
53	GO:0019252: starch biosynthetic process	2.03E-03
54	GO:0048827: phyllome development	2.33E-03
55	GO:0042549: photosystem II stabilization	2.33E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.33E-03
57	GO:0016554: cytidine to uridine editing	2.33E-03
58	GO:0009913: epidermal cell differentiation	2.33E-03
59	GO:0006655: phosphatidylglycerol biosynthetic process	2.33E-03
60	GO:0010019: chloroplast-nucleus signaling pathway	2.80E-03
61	GO:1901259: chloroplast rRNA processing	2.80E-03
62	GO:0055085: transmembrane transport	3.10E-03
63	GO:0009395: phospholipid catabolic process	3.30E-03
64	GO:1900057: positive regulation of leaf senescence	3.30E-03
65	GO:0015995: chlorophyll biosynthetic process	3.67E-03
66	GO:2000070: regulation of response to water deprivation	3.82E-03
67	GO:0010492: maintenance of shoot apical meristem identity	3.82E-03
68	GO:0008610: lipid biosynthetic process	3.82E-03
69	GO:0009642: response to light intensity	3.82E-03
70	GO:0006605: protein targeting	3.82E-03
71	GO:0009704: de-etiolation	3.82E-03
72	GO:0032508: DNA duplex unwinding	3.82E-03
73	GO:0008152: metabolic process	3.97E-03
74	GO:0006002: fructose 6-phosphate metabolic process	4.38E-03
75	GO:0071482: cellular response to light stimulus	4.38E-03
76	GO:0005975: carbohydrate metabolic process	4.55E-03
77	GO:0009631: cold acclimation	4.69E-03
78	GO:0048507: meristem development	4.95E-03
79	GO:0010206: photosystem II repair	4.95E-03
80	GO:0090333: regulation of stomatal closure	4.95E-03
81	GO:0009638: phototropism	5.56E-03
82	GO:1900865: chloroplast RNA modification	5.56E-03
83	GO:0046856: phosphatidylinositol dephosphorylation	6.84E-03
84	GO:0000038: very long-chain fatty acid metabolic process	6.84E-03
85	GO:0008285: negative regulation of cell proliferation	6.84E-03
86	GO:0019684: photosynthesis, light reaction	6.84E-03
87	GO:0006879: cellular iron ion homeostasis	6.84E-03
88	GO:0005983: starch catabolic process	7.51E-03
89	GO:0016024: CDP-diacylglycerol biosynthetic process	7.51E-03
90	GO:0006855: drug transmembrane transport	7.74E-03
91	GO:0006108: malate metabolic process	8.22E-03
92	GO:0010229: inflorescence development	8.22E-03
93	GO:0009718: anthocyanin-containing compound biosynthetic process	8.22E-03
94	GO:0006094: gluconeogenesis	8.22E-03
95	GO:0005986: sucrose biosynthetic process	8.22E-03
96	GO:0009785: blue light signaling pathway	8.22E-03
97	GO:0010628: positive regulation of gene expression	8.22E-03
98	GO:0010540: basipetal auxin transport	8.94E-03
99	GO:0006364: rRNA processing	8.94E-03
100	GO:0019253: reductive pentose-phosphate cycle	8.94E-03
101	GO:0005985: sucrose metabolic process	9.69E-03
102	GO:0009833: plant-type primary cell wall biogenesis	1.05E-02
103	GO:0006833: water transport	1.05E-02
104	GO:0010025: wax biosynthetic process	1.05E-02
105	GO:0006636: unsaturated fatty acid biosynthetic process	1.05E-02
106	GO:2000377: regulation of reactive oxygen species metabolic process	1.12E-02
107	GO:0010073: meristem maintenance	1.21E-02
108	GO:0008299: isoprenoid biosynthetic process	1.21E-02
109	GO:0006418: tRNA aminoacylation for protein translation	1.21E-02
110	GO:0009768: photosynthesis, light harvesting in photosystem I	1.21E-02
111	GO:0035428: hexose transmembrane transport	1.37E-02
112	GO:0006810: transport	1.37E-02
113	GO:0016226: iron-sulfur cluster assembly	1.37E-02
114	GO:0010227: floral organ abscission	1.46E-02
115	GO:0034220: ion transmembrane transport	1.74E-02
116	GO:0042744: hydrogen peroxide catabolic process	1.82E-02
117	GO:0046323: glucose import	1.83E-02
118	GO:0071472: cellular response to salt stress	1.83E-02
119	GO:0010305: leaf vascular tissue pattern formation	1.83E-02
120	GO:0006633: fatty acid biosynthetic process	2.01E-02
121	GO:0048825: cotyledon development	2.02E-02
122	GO:0071554: cell wall organization or biogenesis	2.12E-02
123	GO:0000302: response to reactive oxygen species	2.12E-02
124	GO:0007623: circadian rhythm	2.21E-02
125	GO:0016032: viral process	2.23E-02
126	GO:0009567: double fertilization forming a zygote and endosperm	2.44E-02
127	GO:0009911: positive regulation of flower development	2.76E-02
128	GO:0042128: nitrate assimilation	2.99E-02
129	GO:0030244: cellulose biosynthetic process	3.34E-02
130	GO:0000160: phosphorelay signal transduction system	3.46E-02
131	GO:0010311: lateral root formation	3.46E-02
132	GO:0042254: ribosome biogenesis	3.49E-02
133	GO:0010218: response to far red light	3.58E-02
134	GO:0009409: response to cold	3.68E-02
135	GO:0009637: response to blue light	3.95E-02
136	GO:0006099: tricarboxylic acid cycle	4.07E-02
137	GO:0034599: cellular response to oxidative stress	4.07E-02
138	GO:0080167: response to karrikin	4.23E-02
139	GO:0010114: response to red light	4.73E-02
140	GO:0009640: photomorphogenesis	4.73E-02
141	GO:0009644: response to high light intensity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0051060: pullulanase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0004823: leucine-tRNA ligase activity	0.00E+00
8	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.19E-06
9	GO:0004333: fumarate hydratase activity	2.16E-04
10	GO:0010242: oxygen evolving activity	2.16E-04
11	GO:0045485: omega-6 fatty acid desaturase activity	2.16E-04
12	GO:0004856: xylulokinase activity	2.16E-04
13	GO:0016787: hydrolase activity	2.80E-04
14	GO:0016168: chlorophyll binding	3.65E-04
15	GO:0019843: rRNA binding	4.32E-04
16	GO:0047746: chlorophyllase activity	4.81E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	4.81E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	4.81E-04
19	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.81E-04
20	GO:0004565: beta-galactosidase activity	5.83E-04
21	GO:0008266: poly(U) RNA binding	6.57E-04
22	GO:0070402: NADPH binding	7.83E-04
23	GO:0004373: glycogen (starch) synthase activity	7.83E-04
24	GO:0002161: aminoacyl-tRNA editing activity	7.83E-04
25	GO:0004751: ribose-5-phosphate isomerase activity	7.83E-04
26	GO:0005528: FK506 binding	9.02E-04
27	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.01E-03
28	GO:0019201: nucleotide kinase activity	1.12E-03
29	GO:0016851: magnesium chelatase activity	1.12E-03
30	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.12E-03
31	GO:0022891: substrate-specific transmembrane transporter activity	1.29E-03
32	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.48E-03
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.48E-03
34	GO:0043495: protein anchor	1.48E-03
35	GO:0009011: starch synthase activity	1.48E-03
36	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.89E-03
37	GO:0004130: cytochrome-c peroxidase activity	2.33E-03
38	GO:0042578: phosphoric ester hydrolase activity	2.33E-03
39	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.33E-03
40	GO:0004556: alpha-amylase activity	2.33E-03
41	GO:0016688: L-ascorbate peroxidase activity	2.33E-03
42	GO:0004017: adenylate kinase activity	2.80E-03
43	GO:0019899: enzyme binding	3.30E-03
44	GO:0043022: ribosome binding	3.82E-03
45	GO:0003729: mRNA binding	4.38E-03
46	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.95E-03
47	GO:0042802: identical protein binding	5.46E-03
48	GO:0005381: iron ion transmembrane transporter activity	5.56E-03
49	GO:0015386: potassium:proton antiporter activity	6.84E-03
50	GO:0016788: hydrolase activity, acting on ester bonds	7.18E-03
51	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.51E-03
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.74E-03
53	GO:0031072: heat shock protein binding	8.22E-03
54	GO:0009982: pseudouridine synthase activity	8.22E-03
55	GO:0004022: alcohol dehydrogenase (NAD) activity	8.22E-03
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.05E-02
57	GO:0031409: pigment binding	1.05E-02
58	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.05E-02
59	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.05E-02
60	GO:0051536: iron-sulfur cluster binding	1.12E-02
61	GO:0015079: potassium ion transmembrane transporter activity	1.21E-02
62	GO:0004871: signal transducer activity	1.23E-02
63	GO:0004176: ATP-dependent peptidase activity	1.29E-02
64	GO:0016746: transferase activity, transferring acyl groups	1.31E-02
65	GO:0016760: cellulose synthase (UDP-forming) activity	1.46E-02
66	GO:0003756: protein disulfide isomerase activity	1.55E-02
67	GO:0004812: aminoacyl-tRNA ligase activity	1.64E-02
68	GO:0016853: isomerase activity	1.93E-02
69	GO:0005355: glucose transmembrane transporter activity	1.93E-02
70	GO:0050662: coenzyme binding	1.93E-02
71	GO:0048038: quinone binding	2.12E-02
72	GO:0004518: nuclease activity	2.23E-02
73	GO:0000156: phosphorelay response regulator activity	2.33E-02
74	GO:0016759: cellulose synthase activity	2.44E-02
75	GO:0016413: O-acetyltransferase activity	2.65E-02
76	GO:0016597: amino acid binding	2.65E-02
77	GO:0003824: catalytic activity	2.71E-02
78	GO:0005215: transporter activity	2.74E-02
79	GO:0015250: water channel activity	2.76E-02
80	GO:0004721: phosphoprotein phosphatase activity	3.10E-02
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.34E-02
82	GO:0015238: drug transmembrane transporter activity	3.46E-02
83	GO:0016491: oxidoreductase activity	3.53E-02
84	GO:0004222: metalloendopeptidase activity	3.58E-02
85	GO:0030145: manganese ion binding	3.70E-02
86	GO:0003746: translation elongation factor activity	3.95E-02
87	GO:0003993: acid phosphatase activity	4.07E-02
88	GO:0030246: carbohydrate binding	4.48E-02
89	GO:0052689: carboxylic ester hydrolase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	1.17E-47
4	GO:0009535: chloroplast thylakoid membrane	1.34E-27
5	GO:0009534: chloroplast thylakoid	8.33E-24
6	GO:0009570: chloroplast stroma	4.30E-22
7	GO:0009941: chloroplast envelope	1.89E-18
8	GO:0009579: thylakoid	2.05E-09
9	GO:0009543: chloroplast thylakoid lumen	3.68E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.07E-06
11	GO:0033281: TAT protein transport complex	8.00E-06
12	GO:0010287: plastoglobule	4.49E-05
13	GO:0042651: thylakoid membrane	6.27E-05
14	GO:0031977: thylakoid lumen	8.48E-05
15	GO:0045239: tricarboxylic acid cycle enzyme complex	2.16E-04
16	GO:0031361: integral component of thylakoid membrane	2.16E-04
17	GO:0009515: granal stacked thylakoid	2.16E-04
18	GO:0016021: integral component of membrane	2.48E-04
19	GO:0031969: chloroplast membrane	3.73E-04
20	GO:0032040: small-subunit processome	5.15E-04
21	GO:0010007: magnesium chelatase complex	7.83E-04
22	GO:0009654: photosystem II oxygen evolving complex	9.92E-04
23	GO:0009522: photosystem I	1.89E-03
24	GO:0009706: chloroplast inner membrane	2.01E-03
25	GO:0009523: photosystem II	2.03E-03
26	GO:0019898: extrinsic component of membrane	2.03E-03
27	GO:0005840: ribosome	2.19E-03
28	GO:0009295: nucleoid	2.78E-03
29	GO:0009501: amyloplast	3.82E-03
30	GO:0008180: COP9 signalosome	4.95E-03
31	GO:0009508: plastid chromosome	8.22E-03
32	GO:0030095: chloroplast photosystem II	8.94E-03
33	GO:0030076: light-harvesting complex	9.69E-03
34	GO:0016020: membrane	1.24E-02
35	GO:0005770: late endosome	1.83E-02
36	GO:0048046: apoplast	2.45E-02
37	GO:0010319: stromule	2.54E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.34E-02
39	GO:0015934: large ribosomal subunit	3.70E-02