Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010401: pectic galactan metabolic process0.00E+00
2GO:0009992: cellular water homeostasis0.00E+00
3GO:0019428: allantoin biosynthetic process0.00E+00
4GO:0051553: flavone biosynthetic process0.00E+00
5GO:0032499: detection of peptidoglycan0.00E+00
6GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
7GO:0072660: maintenance of protein location in plasma membrane0.00E+00
8GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
9GO:0006468: protein phosphorylation7.14E-11
10GO:0042742: defense response to bacterium6.52E-10
11GO:0006952: defense response1.10E-07
12GO:0009627: systemic acquired resistance3.71E-07
13GO:0031349: positive regulation of defense response6.25E-06
14GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.36E-05
15GO:0009617: response to bacterium1.55E-05
16GO:0072661: protein targeting to plasma membrane2.19E-05
17GO:0006517: protein deglycosylation2.19E-05
18GO:0009751: response to salicylic acid2.95E-05
19GO:0043069: negative regulation of programmed cell death4.62E-05
20GO:0071323: cellular response to chitin4.81E-05
21GO:0000187: activation of MAPK activity4.81E-05
22GO:0002239: response to oomycetes4.81E-05
23GO:0060548: negative regulation of cell death8.50E-05
24GO:0007166: cell surface receptor signaling pathway1.11E-04
25GO:0006886: intracellular protein transport1.13E-04
26GO:0018279: protein N-linked glycosylation via asparagine1.32E-04
27GO:0009620: response to fungus1.43E-04
28GO:0010942: positive regulation of cell death1.90E-04
29GO:0031348: negative regulation of defense response2.60E-04
30GO:0050832: defense response to fungus2.97E-04
31GO:0055081: anion homeostasis3.73E-04
32GO:0002143: tRNA wobble position uridine thiolation3.73E-04
33GO:0009700: indole phytoalexin biosynthetic process3.73E-04
34GO:0046938: phytochelatin biosynthetic process3.73E-04
35GO:0043687: post-translational protein modification3.73E-04
36GO:0006680: glucosylceramide catabolic process3.73E-04
37GO:0010230: alternative respiration3.73E-04
38GO:0032491: detection of molecule of fungal origin3.73E-04
39GO:0006643: membrane lipid metabolic process3.73E-04
40GO:0060862: negative regulation of floral organ abscission3.73E-04
41GO:0046244: salicylic acid catabolic process3.73E-04
42GO:0006144: purine nucleobase metabolic process3.73E-04
43GO:0010266: response to vitamin B13.73E-04
44GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine3.73E-04
45GO:0034975: protein folding in endoplasmic reticulum3.73E-04
46GO:0001560: regulation of cell growth by extracellular stimulus3.73E-04
47GO:0016337: single organismal cell-cell adhesion3.73E-04
48GO:0000077: DNA damage checkpoint3.73E-04
49GO:0019628: urate catabolic process3.73E-04
50GO:0051245: negative regulation of cellular defense response3.73E-04
51GO:0006422: aspartyl-tRNA aminoacylation3.73E-04
52GO:0016192: vesicle-mediated transport3.96E-04
53GO:0006102: isocitrate metabolic process4.18E-04
54GO:0010120: camalexin biosynthetic process5.11E-04
55GO:0010112: regulation of systemic acquired resistance6.13E-04
56GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.24E-04
57GO:0040020: regulation of meiotic nuclear division8.10E-04
58GO:0007165: signal transduction8.10E-04
59GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.10E-04
60GO:0008535: respiratory chain complex IV assembly8.10E-04
61GO:0051252: regulation of RNA metabolic process8.10E-04
62GO:0015012: heparan sulfate proteoglycan biosynthetic process8.10E-04
63GO:0051258: protein polymerization8.10E-04
64GO:0002221: pattern recognition receptor signaling pathway8.10E-04
65GO:0080185: effector dependent induction by symbiont of host immune response8.10E-04
66GO:0010618: aerenchyma formation8.10E-04
67GO:0080181: lateral root branching8.10E-04
68GO:0006024: glycosaminoglycan biosynthetic process8.10E-04
69GO:0052541: plant-type cell wall cellulose metabolic process8.10E-04
70GO:0006695: cholesterol biosynthetic process8.10E-04
71GO:0009626: plant-type hypersensitive response8.65E-04
72GO:0009817: defense response to fungus, incompatible interaction1.30E-03
73GO:0008219: cell death1.30E-03
74GO:0042344: indole glucosinolate catabolic process1.31E-03
75GO:0046168: glycerol-3-phosphate catabolic process1.31E-03
76GO:1900140: regulation of seedling development1.31E-03
77GO:0055074: calcium ion homeostasis1.31E-03
78GO:0015783: GDP-fucose transport1.31E-03
79GO:0015695: organic cation transport1.31E-03
80GO:0070588: calcium ion transmembrane transport1.58E-03
81GO:0045087: innate immune response1.76E-03
82GO:0034976: response to endoplasmic reticulum stress1.76E-03
83GO:0006099: tricarboxylic acid cycle1.86E-03
84GO:0015031: protein transport1.87E-03
85GO:0006612: protein targeting to membrane1.89E-03
86GO:0006072: glycerol-3-phosphate metabolic process1.89E-03
87GO:0015696: ammonium transport1.89E-03
88GO:0010148: transpiration1.89E-03
89GO:0006516: glycoprotein catabolic process1.89E-03
90GO:0051289: protein homotetramerization1.89E-03
91GO:0015700: arsenite transport1.89E-03
92GO:0006515: misfolded or incompletely synthesized protein catabolic process1.89E-03
93GO:0009311: oligosaccharide metabolic process1.89E-03
94GO:0080147: root hair cell development1.95E-03
95GO:0009863: salicylic acid mediated signaling pathway1.95E-03
96GO:0006487: protein N-linked glycosylation1.95E-03
97GO:0006887: exocytosis2.19E-03
98GO:0016998: cell wall macromolecule catabolic process2.37E-03
99GO:0010363: regulation of plant-type hypersensitive response2.54E-03
100GO:0071219: cellular response to molecule of bacterial origin2.54E-03
101GO:2000038: regulation of stomatal complex development2.54E-03
102GO:0010188: response to microbial phytotoxin2.54E-03
103GO:0080142: regulation of salicylic acid biosynthetic process2.54E-03
104GO:0072488: ammonium transmembrane transport2.54E-03
105GO:0030433: ubiquitin-dependent ERAD pathway2.59E-03
106GO:0009814: defense response, incompatible interaction2.59E-03
107GO:0010227: floral organ abscission2.83E-03
108GO:0030041: actin filament polymerization3.25E-03
109GO:0046283: anthocyanin-containing compound metabolic process3.25E-03
110GO:0031365: N-terminal protein amino acid modification3.25E-03
111GO:0006665: sphingolipid metabolic process3.25E-03
112GO:0000304: response to singlet oxygen3.25E-03
113GO:0010197: polar nucleus fusion3.88E-03
114GO:0060918: auxin transport4.02E-03
115GO:0047484: regulation of response to osmotic stress4.02E-03
116GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.02E-03
117GO:0009759: indole glucosinolate biosynthetic process4.02E-03
118GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.02E-03
119GO:0061025: membrane fusion4.18E-03
120GO:0006623: protein targeting to vacuole4.48E-03
121GO:0000302: response to reactive oxygen species4.79E-03
122GO:0002229: defense response to oomycetes4.79E-03
123GO:0000911: cytokinesis by cell plate formation4.85E-03
124GO:0009612: response to mechanical stimulus4.85E-03
125GO:0006694: steroid biosynthetic process4.85E-03
126GO:2000037: regulation of stomatal complex patterning4.85E-03
127GO:0010310: regulation of hydrogen peroxide metabolic process4.85E-03
128GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.85E-03
129GO:0030163: protein catabolic process5.46E-03
130GO:0010044: response to aluminum ion5.73E-03
131GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.73E-03
132GO:0010161: red light signaling pathway5.73E-03
133GO:0046470: phosphatidylcholine metabolic process5.73E-03
134GO:0043090: amino acid import5.73E-03
135GO:0071446: cellular response to salicylic acid stimulus5.73E-03
136GO:1900056: negative regulation of leaf senescence5.73E-03
137GO:0080167: response to karrikin6.45E-03
138GO:0009787: regulation of abscisic acid-activated signaling pathway6.65E-03
139GO:0006605: protein targeting6.65E-03
140GO:0030162: regulation of proteolysis6.65E-03
141GO:0006491: N-glycan processing6.65E-03
142GO:0010200: response to chitin6.79E-03
143GO:0016126: sterol biosynthetic process6.94E-03
144GO:0009816: defense response to bacterium, incompatible interaction7.34E-03
145GO:0006367: transcription initiation from RNA polymerase II promoter7.64E-03
146GO:0010204: defense response signaling pathway, resistance gene-independent7.64E-03
147GO:2000031: regulation of salicylic acid mediated signaling pathway7.64E-03
148GO:0009699: phenylpropanoid biosynthetic process7.64E-03
149GO:0006002: fructose 6-phosphate metabolic process7.64E-03
150GO:0006906: vesicle fusion7.76E-03
151GO:0045454: cell redox homeostasis8.48E-03
152GO:0010332: response to gamma radiation8.66E-03
153GO:0015780: nucleotide-sugar transport8.66E-03
154GO:0046685: response to arsenic-containing substance8.66E-03
155GO:0009813: flavonoid biosynthetic process9.54E-03
156GO:0043067: regulation of programmed cell death9.74E-03
157GO:0006499: N-terminal protein myristoylation1.00E-02
158GO:0010119: regulation of stomatal movement1.05E-02
159GO:0000103: sulfate assimilation1.09E-02
160GO:0006032: chitin catabolic process1.09E-02
161GO:0010215: cellulose microfibril organization1.09E-02
162GO:0010150: leaf senescence1.12E-02
163GO:0052544: defense response by callose deposition in cell wall1.20E-02
164GO:0019684: photosynthesis, light reaction1.20E-02
165GO:0006470: protein dephosphorylation1.33E-02
166GO:0010105: negative regulation of ethylene-activated signaling pathway1.33E-02
167GO:0012501: programmed cell death1.33E-02
168GO:0010102: lateral root morphogenesis1.45E-02
169GO:0010229: inflorescence development1.45E-02
170GO:0006829: zinc II ion transport1.45E-02
171GO:0006508: proteolysis1.48E-02
172GO:0008643: carbohydrate transport1.61E-02
173GO:0009737: response to abscisic acid1.65E-02
174GO:0042343: indole glucosinolate metabolic process1.71E-02
175GO:0031347: regulation of defense response1.81E-02
176GO:0000165: MAPK cascade1.81E-02
177GO:0009826: unidimensional cell growth1.86E-02
178GO:0048278: vesicle docking2.29E-02
179GO:0015992: proton transport2.29E-02
180GO:0098542: defense response to other organism2.29E-02
181GO:2000022: regulation of jasmonic acid mediated signaling pathway2.44E-02
182GO:0019748: secondary metabolic process2.44E-02
183GO:0009625: response to insect2.60E-02
184GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.67E-02
185GO:0009306: protein secretion2.76E-02
186GO:0046777: protein autophosphorylation2.78E-02
187GO:0042147: retrograde transport, endosome to Golgi2.92E-02
188GO:0009742: brassinosteroid mediated signaling pathway3.04E-02
189GO:0010051: xylem and phloem pattern formation3.08E-02
190GO:0010087: phloem or xylem histogenesis3.08E-02
191GO:0055114: oxidation-reduction process3.16E-02
192GO:0006662: glycerol ether metabolic process3.25E-02
193GO:0010183: pollen tube guidance3.60E-02
194GO:0006891: intra-Golgi vesicle-mediated transport3.78E-02
195GO:0010193: response to ozone3.78E-02
196GO:0016132: brassinosteroid biosynthetic process3.78E-02
197GO:0006457: protein folding4.00E-02
198GO:0006464: cellular protein modification process4.33E-02
199GO:0006904: vesicle docking involved in exocytosis4.52E-02
200GO:0001666: response to hypoxia4.91E-02
201GO:0009615: response to virus4.91E-02
202GO:0045490: pectin catabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0009918: sterol delta7 reductase activity0.00E+00
2GO:0000247: C-8 sterol isomerase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0047750: cholestenol delta-isomerase activity0.00E+00
5GO:2001080: chitosan binding0.00E+00
6GO:0005212: structural constituent of eye lens0.00E+00
7GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
8GO:0033971: hydroxyisourate hydrolase activity0.00E+00
9GO:0047598: 7-dehydrocholesterol reductase activity0.00E+00
10GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
11GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
12GO:0033759: flavone synthase activity0.00E+00
13GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
14GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
15GO:0004164: diphthine synthase activity0.00E+00
16GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
17GO:0016301: kinase activity8.01E-11
18GO:0004674: protein serine/threonine kinase activity1.25E-09
19GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity8.54E-09
20GO:0005524: ATP binding1.36E-08
21GO:0004576: oligosaccharyl transferase activity7.62E-07
22GO:0004656: procollagen-proline 4-dioxygenase activity5.68E-06
23GO:0004714: transmembrane receptor protein tyrosine kinase activity1.36E-05
24GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.31E-05
25GO:0004449: isocitrate dehydrogenase (NAD+) activity4.81E-05
26GO:0008061: chitin binding1.27E-04
27GO:0004190: aspartic-type endopeptidase activity1.27E-04
28GO:0004672: protein kinase activity2.94E-04
29GO:0003756: protein disulfide isomerase activity3.29E-04
30GO:0008320: protein transmembrane transporter activity3.33E-04
31GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity3.73E-04
32GO:0004348: glucosylceramidase activity3.73E-04
33GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.73E-04
34GO:0071992: phytochelatin transmembrane transporter activity3.73E-04
35GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.73E-04
36GO:1901149: salicylic acid binding3.73E-04
37GO:0015085: calcium ion transmembrane transporter activity3.73E-04
38GO:0004815: aspartate-tRNA ligase activity3.73E-04
39GO:0046870: cadmium ion binding3.73E-04
40GO:0004708: MAP kinase kinase activity4.18E-04
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.32E-04
42GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity8.09E-04
43GO:0008428: ribonuclease inhibitor activity8.10E-04
44GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity8.10E-04
45GO:0038199: ethylene receptor activity8.10E-04
46GO:0030247: polysaccharide binding1.15E-03
47GO:0005388: calcium-transporting ATPase activity1.25E-03
48GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.31E-03
49GO:0004148: dihydrolipoyl dehydrogenase activity1.31E-03
50GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.31E-03
51GO:0005457: GDP-fucose transmembrane transporter activity1.31E-03
52GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.31E-03
53GO:0046872: metal ion binding1.63E-03
54GO:0009678: hydrogen-translocating pyrophosphatase activity1.89E-03
55GO:0004792: thiosulfate sulfurtransferase activity1.89E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.89E-03
57GO:0051740: ethylene binding1.89E-03
58GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.89E-03
59GO:0031418: L-ascorbic acid binding1.95E-03
60GO:0033612: receptor serine/threonine kinase binding2.37E-03
61GO:0005484: SNAP receptor activity2.43E-03
62GO:0019199: transmembrane receptor protein kinase activity2.54E-03
63GO:0043495: protein anchor2.54E-03
64GO:0008948: oxaloacetate decarboxylase activity3.25E-03
65GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.25E-03
66GO:0045431: flavonol synthase activity3.25E-03
67GO:0008641: small protein activating enzyme activity3.25E-03
68GO:0016298: lipase activity3.72E-03
69GO:0004029: aldehyde dehydrogenase (NAD) activity4.02E-03
70GO:0008519: ammonium transmembrane transporter activity4.02E-03
71GO:0031593: polyubiquitin binding4.02E-03
72GO:0031625: ubiquitin protein ligase binding4.05E-03
73GO:0004012: phospholipid-translocating ATPase activity4.85E-03
74GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.46E-03
75GO:0003872: 6-phosphofructokinase activity5.73E-03
76GO:0008235: metalloexopeptidase activity5.73E-03
77GO:0004427: inorganic diphosphatase activity5.73E-03
78GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity7.64E-03
79GO:0004630: phospholipase D activity7.64E-03
80GO:0004806: triglyceride lipase activity8.18E-03
81GO:0005509: calcium ion binding8.39E-03
82GO:0008565: protein transporter activity9.35E-03
83GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.74E-03
84GO:0004722: protein serine/threonine phosphatase activity9.75E-03
85GO:0004713: protein tyrosine kinase activity1.09E-02
86GO:0004673: protein histidine kinase activity1.09E-02
87GO:0004568: chitinase activity1.09E-02
88GO:0004177: aminopeptidase activity1.20E-02
89GO:0008559: xenobiotic-transporting ATPase activity1.20E-02
90GO:0000149: SNARE binding1.26E-02
91GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.45E-02
92GO:0015095: magnesium ion transmembrane transporter activity1.45E-02
93GO:0000155: phosphorelay sensor kinase activity1.45E-02
94GO:0005516: calmodulin binding1.70E-02
95GO:0003712: transcription cofactor activity1.71E-02
96GO:0005515: protein binding1.75E-02
97GO:0051287: NAD binding1.81E-02
98GO:0043130: ubiquitin binding1.99E-02
99GO:0008324: cation transmembrane transporter activity2.14E-02
100GO:0043531: ADP binding2.19E-02
101GO:0004707: MAP kinase activity2.29E-02
102GO:0035251: UDP-glucosyltransferase activity2.29E-02
103GO:0008810: cellulase activity2.60E-02
104GO:0005506: iron ion binding2.74E-02
105GO:0008514: organic anion transmembrane transporter activity2.76E-02
106GO:0047134: protein-disulfide reductase activity2.92E-02
107GO:0016746: transferase activity, transferring acyl groups2.95E-02
108GO:0015035: protein disulfide oxidoreductase activity2.95E-02
109GO:0046873: metal ion transmembrane transporter activity3.25E-02
110GO:0030276: clathrin binding3.25E-02
111GO:0042803: protein homodimerization activity3.39E-02
112GO:0004791: thioredoxin-disulfide reductase activity3.42E-02
113GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.53E-02
114GO:0004872: receptor activity3.60E-02
115GO:0051213: dioxygenase activity4.91E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
3GO:0005886: plasma membrane3.55E-17
4GO:0016021: integral component of membrane2.18E-13
5GO:0005783: endoplasmic reticulum1.51E-10
6GO:0008250: oligosaccharyltransferase complex8.54E-09
7GO:0005789: endoplasmic reticulum membrane6.51E-07
8GO:0005774: vacuolar membrane2.76E-06
9GO:0030665: clathrin-coated vesicle membrane3.56E-05
10GO:0005794: Golgi apparatus3.90E-05
11GO:0005788: endoplasmic reticulum lumen1.16E-04
12GO:0005911: cell-cell junction3.73E-04
13GO:0031234: extrinsic component of cytoplasmic side of plasma membrane3.73E-04
14GO:0045252: oxoglutarate dehydrogenase complex3.73E-04
15GO:0009504: cell plate5.38E-04
16GO:0005802: trans-Golgi network6.01E-04
17GO:0009506: plasmodesma7.62E-04
18GO:0005901: caveola8.10E-04
19GO:0030134: ER to Golgi transport vesicle8.10E-04
20GO:0005768: endosome8.22E-04
21GO:0017119: Golgi transport complex8.43E-04
22GO:0009505: plant-type cell wall1.81E-03
23GO:0009331: glycerol-3-phosphate dehydrogenase complex1.89E-03
24GO:0070062: extracellular exosome1.89E-03
25GO:0031902: late endosome membrane2.19E-03
26GO:0005945: 6-phosphofructokinase complex3.25E-03
27GO:0030904: retromer complex4.02E-03
28GO:0016020: membrane4.87E-03
29GO:0005887: integral component of plasma membrane5.27E-03
30GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.73E-03
31GO:0032580: Golgi cisterna membrane5.81E-03
32GO:0030131: clathrin adaptor complex6.65E-03
33GO:0000326: protein storage vacuole7.64E-03
34GO:0005623: cell7.69E-03
35GO:0031901: early endosome membrane8.66E-03
36GO:0031201: SNARE complex1.37E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.71E-02
38GO:0005795: Golgi stack1.71E-02
39GO:0000139: Golgi membrane1.76E-02
40GO:0005769: early endosome1.85E-02
41GO:0005773: vacuole2.31E-02
42GO:0019898: extrinsic component of membrane3.60E-02
43GO:0005829: cytosol3.67E-02
44GO:0016592: mediator complex3.96E-02
45GO:0000145: exocyst3.96E-02
46GO:0071944: cell periphery4.14E-02
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Gene type



Gene DE type