GO Enrichment Analysis of Co-expressed Genes with
AT5G54540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 2 | GO:0015970: guanosine tetraphosphate biosynthetic process | 0.00E+00 |
| 3 | GO:0010378: temperature compensation of the circadian clock | 0.00E+00 |
| 4 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.24E-07 |
| 5 | GO:0009645: response to low light intensity stimulus | 2.68E-06 |
| 6 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.68E-06 |
| 7 | GO:0018298: protein-chromophore linkage | 3.08E-06 |
| 8 | GO:0010218: response to far red light | 3.66E-06 |
| 9 | GO:0015979: photosynthesis | 7.23E-06 |
| 10 | GO:0015812: gamma-aminobutyric acid transport | 1.77E-05 |
| 11 | GO:0032958: inositol phosphate biosynthetic process | 1.77E-05 |
| 12 | GO:0048511: rhythmic process | 3.48E-05 |
| 13 | GO:0009416: response to light stimulus | 3.85E-05 |
| 14 | GO:0051170: nuclear import | 4.61E-05 |
| 15 | GO:0007623: circadian rhythm | 5.07E-05 |
| 16 | GO:1902448: positive regulation of shade avoidance | 8.18E-05 |
| 17 | GO:0006598: polyamine catabolic process | 8.18E-05 |
| 18 | GO:0006020: inositol metabolic process | 1.23E-04 |
| 19 | GO:0010601: positive regulation of auxin biosynthetic process | 1.23E-04 |
| 20 | GO:0080167: response to karrikin | 1.33E-04 |
| 21 | GO:0030104: water homeostasis | 1.69E-04 |
| 22 | GO:0000160: phosphorelay signal transduction system | 1.69E-04 |
| 23 | GO:0010600: regulation of auxin biosynthetic process | 1.69E-04 |
| 24 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 2.19E-04 |
| 25 | GO:0042542: response to hydrogen peroxide | 2.57E-04 |
| 26 | GO:0010114: response to red light | 2.68E-04 |
| 27 | GO:0009640: photomorphogenesis | 2.68E-04 |
| 28 | GO:0009644: response to high light intensity | 2.90E-04 |
| 29 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 3.27E-04 |
| 30 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 3.27E-04 |
| 31 | GO:0009585: red, far-red light phototransduction | 3.61E-04 |
| 32 | GO:0048437: floral organ development | 3.84E-04 |
| 33 | GO:0010928: regulation of auxin mediated signaling pathway | 4.43E-04 |
| 34 | GO:0006355: regulation of transcription, DNA-templated | 4.75E-04 |
| 35 | GO:0010099: regulation of photomorphogenesis | 5.05E-04 |
| 36 | GO:0009827: plant-type cell wall modification | 5.05E-04 |
| 37 | GO:0090333: regulation of stomatal closure | 5.68E-04 |
| 38 | GO:0006351: transcription, DNA-templated | 5.93E-04 |
| 39 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 6.32E-04 |
| 40 | GO:0055062: phosphate ion homeostasis | 6.99E-04 |
| 41 | GO:0009641: shade avoidance | 6.99E-04 |
| 42 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.08E-04 |
| 43 | GO:0009266: response to temperature stimulus | 9.82E-04 |
| 44 | GO:0090351: seedling development | 1.06E-03 |
| 45 | GO:0003333: amino acid transmembrane transport | 1.37E-03 |
| 46 | GO:0009269: response to desiccation | 1.37E-03 |
| 47 | GO:0010017: red or far-red light signaling pathway | 1.46E-03 |
| 48 | GO:0009693: ethylene biosynthetic process | 1.54E-03 |
| 49 | GO:0071215: cellular response to abscisic acid stimulus | 1.54E-03 |
| 50 | GO:0009409: response to cold | 1.68E-03 |
| 51 | GO:0045892: negative regulation of transcription, DNA-templated | 1.94E-03 |
| 52 | GO:0006814: sodium ion transport | 2.00E-03 |
| 53 | GO:0042752: regulation of circadian rhythm | 2.00E-03 |
| 54 | GO:0009556: microsporogenesis | 2.09E-03 |
| 55 | GO:0000302: response to reactive oxygen species | 2.19E-03 |
| 56 | GO:1901657: glycosyl compound metabolic process | 2.39E-03 |
| 57 | GO:0048573: photoperiodism, flowering | 3.13E-03 |
| 58 | GO:0015995: chlorophyll biosynthetic process | 3.13E-03 |
| 59 | GO:0009817: defense response to fungus, incompatible interaction | 3.36E-03 |
| 60 | GO:0009908: flower development | 3.72E-03 |
| 61 | GO:0009637: response to blue light | 3.94E-03 |
| 62 | GO:0035556: intracellular signal transduction | 4.34E-03 |
| 63 | GO:0008643: carbohydrate transport | 4.94E-03 |
| 64 | GO:0055085: transmembrane transport | 5.21E-03 |
| 65 | GO:0009553: embryo sac development | 7.19E-03 |
| 66 | GO:0009624: response to nematode | 7.34E-03 |
| 67 | GO:0010150: leaf senescence | 1.08E-02 |
| 68 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.11E-02 |
| 69 | GO:0010468: regulation of gene expression | 1.22E-02 |
| 70 | GO:0005975: carbohydrate metabolic process | 1.26E-02 |
| 71 | GO:0009658: chloroplast organization | 1.46E-02 |
| 72 | GO:0007165: signal transduction | 1.74E-02 |
| 73 | GO:0044550: secondary metabolite biosynthetic process | 1.81E-02 |
| 74 | GO:0016042: lipid catabolic process | 2.20E-02 |
| 75 | GO:0006629: lipid metabolic process | 2.25E-02 |
| 76 | GO:0009753: response to jasmonic acid | 2.36E-02 |
| 77 | GO:0055114: oxidation-reduction process | 2.66E-02 |
| 78 | GO:0009738: abscisic acid-activated signaling pathway | 3.31E-02 |
| 79 | GO:0009611: response to wounding | 3.44E-02 |
| 80 | GO:0045893: positive regulation of transcription, DNA-templated | 3.74E-02 |
| 81 | GO:0006457: protein folding | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 7 | GO:0031409: pigment binding | 1.53E-07 |
| 8 | GO:0016168: chlorophyll binding | 2.12E-06 |
| 9 | GO:0015185: gamma-aminobutyric acid transmembrane transporter activity | 1.77E-05 |
| 10 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 1.77E-05 |
| 11 | GO:0000829: inositol heptakisphosphate kinase activity | 1.77E-05 |
| 12 | GO:0080079: cellobiose glucosidase activity | 1.77E-05 |
| 13 | GO:0000828: inositol hexakisphosphate kinase activity | 1.77E-05 |
| 14 | GO:0008728: GTP diphosphokinase activity | 4.61E-05 |
| 15 | GO:0015180: L-alanine transmembrane transporter activity | 4.61E-05 |
| 16 | GO:0046592: polyamine oxidase activity | 8.18E-05 |
| 17 | GO:0000156: phosphorelay response regulator activity | 9.22E-05 |
| 18 | GO:0015189: L-lysine transmembrane transporter activity | 1.23E-04 |
| 19 | GO:0015181: arginine transmembrane transporter activity | 1.23E-04 |
| 20 | GO:0005313: L-glutamate transmembrane transporter activity | 1.69E-04 |
| 21 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 2.19E-04 |
| 22 | GO:0004629: phospholipase C activity | 2.72E-04 |
| 23 | GO:0004435: phosphatidylinositol phospholipase C activity | 3.27E-04 |
| 24 | GO:0000989: transcription factor activity, transcription factor binding | 5.68E-04 |
| 25 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 5.68E-04 |
| 26 | GO:0047372: acylglycerol lipase activity | 7.68E-04 |
| 27 | GO:0005351: sugar:proton symporter activity | 8.42E-04 |
| 28 | GO:0005315: inorganic phosphate transmembrane transporter activity | 9.08E-04 |
| 29 | GO:0004565: beta-galactosidase activity | 9.08E-04 |
| 30 | GO:0008131: primary amine oxidase activity | 9.82E-04 |
| 31 | GO:0003712: transcription cofactor activity | 1.06E-03 |
| 32 | GO:0004707: MAP kinase activity | 1.37E-03 |
| 33 | GO:0008514: organic anion transmembrane transporter activity | 1.63E-03 |
| 34 | GO:0046872: metal ion binding | 3.00E-03 |
| 35 | GO:0005515: protein binding | 3.09E-03 |
| 36 | GO:0102483: scopolin beta-glucosidase activity | 3.13E-03 |
| 37 | GO:0008422: beta-glucosidase activity | 4.19E-03 |
| 38 | GO:0015293: symporter activity | 5.07E-03 |
| 39 | GO:0015171: amino acid transmembrane transporter activity | 6.17E-03 |
| 40 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 8.74E-03 |
| 41 | GO:0003677: DNA binding | 8.93E-03 |
| 42 | GO:0015144: carbohydrate transmembrane transporter activity | 9.73E-03 |
| 43 | GO:0015297: antiporter activity | 1.04E-02 |
| 44 | GO:0004497: monooxygenase activity | 1.70E-02 |
| 45 | GO:0004871: signal transducer activity | 2.00E-02 |
| 46 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.05E-02 |
| 47 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.10E-02 |
| 48 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.13E-02 |
| 49 | GO:0043565: sequence-specific DNA binding | 4.26E-02 |
| 50 | GO:0019825: oxygen binding | 4.36E-02 |
| 51 | GO:0005516: calmodulin binding | 4.53E-02 |
| 52 | GO:0005525: GTP binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030076: light-harvesting complex | 1.25E-07 |
| 2 | GO:0010287: plastoglobule | 5.75E-07 |
| 3 | GO:0009522: photosystem I | 7.66E-07 |
| 4 | GO:0009579: thylakoid | 5.41E-05 |
| 5 | GO:0009523: photosystem II | 7.35E-05 |
| 6 | GO:0009517: PSII associated light-harvesting complex II | 1.69E-04 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 5.18E-04 |
| 8 | GO:0009534: chloroplast thylakoid | 6.12E-04 |
| 9 | GO:0042651: thylakoid membrane | 1.29E-03 |
| 10 | GO:0031966: mitochondrial membrane | 5.48E-03 |
| 11 | GO:0016607: nuclear speck | 6.60E-03 |
| 12 | GO:0016021: integral component of membrane | 7.26E-03 |
| 13 | GO:0009941: chloroplast envelope | 8.12E-03 |
| 14 | GO:0005654: nucleoplasm | 8.42E-03 |
| 15 | GO:0005623: cell | 8.74E-03 |
| 16 | GO:0009507: chloroplast | 1.74E-02 |
| 17 | GO:0016020: membrane | 2.02E-02 |
| 18 | GO:0005887: integral component of plasma membrane | 2.80E-02 |
| 19 | GO:0022626: cytosolic ribosome | 3.28E-02 |
| 20 | GO:0005618: cell wall | 3.31E-02 |
| 21 | GO:0005777: peroxisome | 3.74E-02 |