Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006793: phosphorus metabolic process0.00E+00
2GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
3GO:0036503: ERAD pathway0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0071327: cellular response to trehalose stimulus0.00E+00
6GO:0015690: aluminum cation transport0.00E+00
7GO:0070212: protein poly-ADP-ribosylation0.00E+00
8GO:0045792: negative regulation of cell size0.00E+00
9GO:1900367: positive regulation of defense response to insect0.00E+00
10GO:0002376: immune system process0.00E+00
11GO:0042742: defense response to bacterium3.59E-12
12GO:0009617: response to bacterium8.10E-12
13GO:0010200: response to chitin1.32E-10
14GO:0006952: defense response2.85E-10
15GO:0009627: systemic acquired resistance9.60E-10
16GO:0009816: defense response to bacterium, incompatible interaction3.47E-08
17GO:0080142: regulation of salicylic acid biosynthetic process2.16E-07
18GO:0009626: plant-type hypersensitive response1.76E-06
19GO:0015031: protein transport2.02E-06
20GO:0009751: response to salicylic acid2.49E-06
21GO:0031349: positive regulation of defense response2.51E-06
22GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.51E-06
23GO:0009625: response to insect4.10E-06
24GO:0010120: camalexin biosynthetic process6.03E-06
25GO:0010112: regulation of systemic acquired resistance8.44E-06
26GO:1900426: positive regulation of defense response to bacterium1.14E-05
27GO:0010150: leaf senescence1.26E-05
28GO:0002237: response to molecule of bacterial origin3.72E-05
29GO:0034605: cellular response to heat3.72E-05
30GO:0009697: salicylic acid biosynthetic process6.05E-05
31GO:0009863: salicylic acid mediated signaling pathway6.28E-05
32GO:0010942: positive regulation of cell death8.88E-05
33GO:0051707: response to other organism1.18E-04
34GO:0006886: intracellular protein transport1.19E-04
35GO:0070370: cellular heat acclimation1.62E-04
36GO:0030162: regulation of proteolysis2.06E-04
37GO:0009700: indole phytoalexin biosynthetic process2.32E-04
38GO:1901183: positive regulation of camalexin biosynthetic process2.32E-04
39GO:0044376: RNA polymerase II complex import to nucleus2.32E-04
40GO:0010230: alternative respiration2.32E-04
41GO:0050691: regulation of defense response to virus by host2.32E-04
42GO:0046244: salicylic acid catabolic process2.32E-04
43GO:0060862: negative regulation of floral organ abscission2.32E-04
44GO:0010266: response to vitamin B12.32E-04
45GO:0034975: protein folding in endoplasmic reticulum2.32E-04
46GO:0051245: negative regulation of cellular defense response2.32E-04
47GO:1990022: RNA polymerase III complex localization to nucleus2.32E-04
48GO:0000302: response to reactive oxygen species2.37E-04
49GO:0006468: protein phosphorylation2.39E-04
50GO:2000031: regulation of salicylic acid mediated signaling pathway2.55E-04
51GO:0009737: response to abscisic acid3.70E-04
52GO:0009409: response to cold3.94E-04
53GO:0043069: negative regulation of programmed cell death4.30E-04
54GO:0016192: vesicle-mediated transport4.94E-04
55GO:0009682: induced systemic resistance4.97E-04
56GO:0051592: response to calcium ion5.15E-04
57GO:0080185: effector dependent induction by symbiont of host immune response5.15E-04
58GO:0010618: aerenchyma formation5.15E-04
59GO:0006979: response to oxidative stress7.10E-04
60GO:0007034: vacuolar transport7.26E-04
61GO:0010581: regulation of starch biosynthetic process8.37E-04
62GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway8.37E-04
63GO:1900140: regulation of seedling development8.37E-04
64GO:0002230: positive regulation of defense response to virus by host8.37E-04
65GO:0055074: calcium ion homeostasis8.37E-04
66GO:0010351: lithium ion transport8.37E-04
67GO:0072661: protein targeting to plasma membrane8.37E-04
68GO:0010272: response to silver ion8.37E-04
69GO:0048281: inflorescence morphogenesis8.37E-04
70GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process9.80E-04
71GO:0007166: cell surface receptor signaling pathway1.01E-03
72GO:0006612: protein targeting to membrane1.19E-03
73GO:0048530: fruit morphogenesis1.19E-03
74GO:1902290: positive regulation of defense response to oomycetes1.19E-03
75GO:0006882: cellular zinc ion homeostasis1.19E-03
76GO:0019438: aromatic compound biosynthetic process1.19E-03
77GO:0002239: response to oomycetes1.19E-03
78GO:0033014: tetrapyrrole biosynthetic process1.19E-03
79GO:0031347: regulation of defense response1.28E-03
80GO:2000022: regulation of jasmonic acid mediated signaling pathway1.31E-03
81GO:0031348: negative regulation of defense response1.31E-03
82GO:0071456: cellular response to hypoxia1.31E-03
83GO:0010224: response to UV-B1.53E-03
84GO:0009306: protein secretion1.55E-03
85GO:0010508: positive regulation of autophagy1.59E-03
86GO:1901141: regulation of lignin biosynthetic process1.59E-03
87GO:0080037: negative regulation of cytokinin-activated signaling pathway1.59E-03
88GO:0060548: negative regulation of cell death1.59E-03
89GO:0010387: COP9 signalosome assembly1.59E-03
90GO:0045088: regulation of innate immune response1.59E-03
91GO:0010363: regulation of plant-type hypersensitive response1.59E-03
92GO:0071219: cellular response to molecule of bacterial origin1.59E-03
93GO:2000762: regulation of phenylpropanoid metabolic process2.03E-03
94GO:0046283: anthocyanin-containing compound metabolic process2.03E-03
95GO:0018344: protein geranylgeranylation2.03E-03
96GO:0010225: response to UV-C2.03E-03
97GO:0061025: membrane fusion2.09E-03
98GO:0009646: response to absence of light2.09E-03
99GO:0009414: response to water deprivation2.35E-03
100GO:0002229: defense response to oomycetes2.40E-03
101GO:0006891: intra-Golgi vesicle-mediated transport2.40E-03
102GO:0010193: response to ozone2.40E-03
103GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.50E-03
104GO:0002238: response to molecule of fungal origin2.50E-03
105GO:0009759: indole glucosinolate biosynthetic process2.50E-03
106GO:0050832: defense response to fungus2.62E-03
107GO:0009612: response to mechanical stimulus3.00E-03
108GO:0010199: organ boundary specification between lateral organs and the meristem3.00E-03
109GO:0010555: response to mannitol3.00E-03
110GO:0010310: regulation of hydrogen peroxide metabolic process3.00E-03
111GO:2000067: regulation of root morphogenesis3.00E-03
112GO:0000911: cytokinesis by cell plate formation3.00E-03
113GO:0009615: response to virus3.46E-03
114GO:0009651: response to salt stress3.49E-03
115GO:0019745: pentacyclic triterpenoid biosynthetic process3.54E-03
116GO:0030026: cellular manganese ion homeostasis3.54E-03
117GO:1900057: positive regulation of leaf senescence3.54E-03
118GO:0050829: defense response to Gram-negative bacterium3.54E-03
119GO:0071446: cellular response to salicylic acid stimulus3.54E-03
120GO:0000338: protein deneddylation3.54E-03
121GO:0006906: vesicle fusion3.86E-03
122GO:0009787: regulation of abscisic acid-activated signaling pathway4.10E-03
123GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.10E-03
124GO:0043068: positive regulation of programmed cell death4.10E-03
125GO:0031540: regulation of anthocyanin biosynthetic process4.10E-03
126GO:0008219: cell death4.50E-03
127GO:0010497: plasmodesmata-mediated intercellular transport4.70E-03
128GO:0010204: defense response signaling pathway, resistance gene-independent4.70E-03
129GO:0030968: endoplasmic reticulum unfolded protein response4.70E-03
130GO:0043562: cellular response to nitrogen levels4.70E-03
131GO:0009699: phenylpropanoid biosynthetic process4.70E-03
132GO:0007186: G-protein coupled receptor signaling pathway4.70E-03
133GO:0009407: toxin catabolic process4.97E-03
134GO:0007568: aging5.21E-03
135GO:0006783: heme biosynthetic process5.32E-03
136GO:0051865: protein autoubiquitination5.32E-03
137GO:0009867: jasmonic acid mediated signaling pathway5.71E-03
138GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.97E-03
139GO:0010205: photoinhibition5.97E-03
140GO:2000280: regulation of root development5.97E-03
141GO:0009870: defense response signaling pathway, resistance gene-dependent6.65E-03
142GO:0006032: chitin catabolic process6.65E-03
143GO:0055062: phosphate ion homeostasis6.65E-03
144GO:0007064: mitotic sister chromatid cohesion6.65E-03
145GO:0006887: exocytosis6.78E-03
146GO:0042542: response to hydrogen peroxide7.07E-03
147GO:0052544: defense response by callose deposition in cell wall7.35E-03
148GO:0015770: sucrose transport7.35E-03
149GO:0000272: polysaccharide catabolic process7.35E-03
150GO:0009750: response to fructose7.35E-03
151GO:0002213: defense response to insect8.08E-03
152GO:0010105: negative regulation of ethylene-activated signaling pathway8.08E-03
153GO:0006790: sulfur compound metabolic process8.08E-03
154GO:0012501: programmed cell death8.08E-03
155GO:0009636: response to toxic substance8.27E-03
156GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.91E-03
157GO:0070588: calcium ion transmembrane transport1.04E-02
158GO:0046854: phosphatidylinositol phosphorylation1.04E-02
159GO:0042343: indole glucosinolate metabolic process1.04E-02
160GO:0080167: response to karrikin1.05E-02
161GO:0034976: response to endoplasmic reticulum stress1.13E-02
162GO:0080147: root hair cell development1.21E-02
163GO:0006874: cellular calcium ion homeostasis1.30E-02
164GO:0003333: amino acid transmembrane transport1.39E-02
165GO:0016998: cell wall macromolecule catabolic process1.39E-02
166GO:0098542: defense response to other organism1.39E-02
167GO:0048278: vesicle docking1.39E-02
168GO:0006457: protein folding1.42E-02
169GO:0009624: response to nematode1.42E-02
170GO:0035428: hexose transmembrane transport1.48E-02
171GO:0030433: ubiquitin-dependent ERAD pathway1.48E-02
172GO:0019748: secondary metabolic process1.48E-02
173GO:0009814: defense response, incompatible interaction1.48E-02
174GO:0009411: response to UV1.57E-02
175GO:0001944: vasculature development1.57E-02
176GO:0009408: response to heat1.73E-02
177GO:0070417: cellular response to cold1.77E-02
178GO:0042631: cellular response to water deprivation1.87E-02
179GO:0009753: response to jasmonic acid1.89E-02
180GO:0046323: glucose import1.97E-02
181GO:0048544: recognition of pollen2.07E-02
182GO:0006814: sodium ion transport2.07E-02
183GO:0009790: embryo development2.08E-02
184GO:0009749: response to glucose2.18E-02
185GO:0006623: protein targeting to vacuole2.18E-02
186GO:0007264: small GTPase mediated signal transduction2.40E-02
187GO:0006464: cellular protein modification process2.62E-02
188GO:0006904: vesicle docking involved in exocytosis2.74E-02
189GO:0006470: protein dephosphorylation2.81E-02
190GO:0051607: defense response to virus2.86E-02
191GO:0000910: cytokinesis2.86E-02
192GO:0007165: signal transduction2.95E-02
193GO:0001666: response to hypoxia2.98E-02
194GO:0015995: chlorophyll biosynthetic process3.34E-02
195GO:0016311: dephosphorylation3.47E-02
196GO:0009817: defense response to fungus, incompatible interaction3.59E-02
197GO:0009611: response to wounding3.64E-02
198GO:0051301: cell division3.93E-02
199GO:0055114: oxidation-reduction process3.97E-02
200GO:0048527: lateral root development3.98E-02
201GO:0006970: response to osmotic stress4.08E-02
202GO:0009860: pollen tube growth4.08E-02
203GO:0006865: amino acid transport4.12E-02
204GO:0045087: innate immune response4.25E-02
205GO:0009723: response to ethylene4.38E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0005092: GDP-dissociation inhibitor activity0.00E+00
4GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
5GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
6GO:0047631: ADP-ribose diphosphatase activity6.05E-05
7GO:0000210: NAD+ diphosphatase activity8.88E-05
8GO:0008320: protein transmembrane transporter activity1.62E-04
9GO:0004714: transmembrane receptor protein tyrosine kinase activity2.06E-04
10GO:0004325: ferrochelatase activity2.32E-04
11GO:2001147: camalexin binding2.32E-04
12GO:2001227: quercitrin binding2.32E-04
13GO:1901149: salicylic acid binding2.32E-04
14GO:0080042: ADP-glucose pyrophosphohydrolase activity2.32E-04
15GO:0016301: kinase activity2.48E-04
16GO:0004674: protein serine/threonine kinase activity4.38E-04
17GO:0004338: glucan exo-1,3-beta-glucosidase activity5.15E-04
18GO:0080041: ADP-ribose pyrophosphohydrolase activity5.15E-04
19GO:0017110: nucleoside-diphosphatase activity5.15E-04
20GO:0008565: protein transporter activity6.67E-04
21GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.45E-04
22GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.37E-04
23GO:0031683: G-protein beta/gamma-subunit complex binding8.37E-04
24GO:0001664: G-protein coupled receptor binding8.37E-04
25GO:0005093: Rab GDP-dissociation inhibitor activity8.37E-04
26GO:0005484: SNAP receptor activity1.01E-03
27GO:0042299: lupeol synthase activity1.19E-03
28GO:0035529: NADH pyrophosphatase activity1.19E-03
29GO:0043565: sequence-specific DNA binding1.35E-03
30GO:0003756: protein disulfide isomerase activity1.55E-03
31GO:0016866: intramolecular transferase activity1.59E-03
32GO:0015368: calcium:cation antiporter activity1.59E-03
33GO:0015369: calcium:proton antiporter activity1.59E-03
34GO:0031625: ubiquitin protein ligase binding1.67E-03
35GO:0017137: Rab GTPase binding2.03E-03
36GO:0015145: monosaccharide transmembrane transporter activity2.03E-03
37GO:0004029: aldehyde dehydrogenase (NAD) activity2.50E-03
38GO:0008420: CTD phosphatase activity2.50E-03
39GO:0005515: protein binding2.70E-03
40GO:0004656: procollagen-proline 4-dioxygenase activity3.00E-03
41GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.00E-03
42GO:0043295: glutathione binding3.54E-03
43GO:0008506: sucrose:proton symporter activity3.54E-03
44GO:0004806: triglyceride lipase activity4.07E-03
45GO:0030247: polysaccharide binding4.07E-03
46GO:0004683: calmodulin-dependent protein kinase activity4.07E-03
47GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
48GO:0015491: cation:cation antiporter activity4.10E-03
49GO:0004564: beta-fructofuranosidase activity4.10E-03
50GO:0005524: ATP binding4.60E-03
51GO:0004222: metalloendopeptidase activity4.97E-03
52GO:0005516: calmodulin binding5.02E-03
53GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.71E-03
54GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.97E-03
55GO:0004575: sucrose alpha-glucosidase activity5.97E-03
56GO:0000149: SNARE binding6.23E-03
57GO:0004713: protein tyrosine kinase activity6.65E-03
58GO:0004568: chitinase activity6.65E-03
59GO:0008171: O-methyltransferase activity6.65E-03
60GO:0004364: glutathione transferase activity7.07E-03
61GO:0005509: calcium ion binding7.32E-03
62GO:0015095: magnesium ion transmembrane transporter activity8.84E-03
63GO:0005262: calcium channel activity8.84E-03
64GO:0005388: calcium-transporting ATPase activity8.84E-03
65GO:0051287: NAD binding8.91E-03
66GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.62E-03
67GO:0008061: chitin binding1.04E-02
68GO:0004190: aspartic-type endopeptidase activity1.04E-02
69GO:0004867: serine-type endopeptidase inhibitor activity1.04E-02
70GO:0031418: L-ascorbic acid binding1.21E-02
71GO:0004298: threonine-type endopeptidase activity1.39E-02
72GO:0033612: receptor serine/threonine kinase binding1.39E-02
73GO:0004871: signal transducer activity1.40E-02
74GO:0015035: protein disulfide oxidoreductase activity1.46E-02
75GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.46E-02
76GO:0008810: cellulase activity1.57E-02
77GO:0022891: substrate-specific transmembrane transporter activity1.57E-02
78GO:0004672: protein kinase activity1.64E-02
79GO:0003924: GTPase activity1.73E-02
80GO:0004527: exonuclease activity1.97E-02
81GO:0008080: N-acetyltransferase activity1.97E-02
82GO:0005355: glucose transmembrane transporter activity2.07E-02
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.51E-02
84GO:0005506: iron ion binding2.69E-02
85GO:0051213: dioxygenase activity2.98E-02
86GO:0042802: identical protein binding3.12E-02
87GO:0009931: calcium-dependent protein serine/threonine kinase activity3.22E-02
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.47E-02
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.59E-02
90GO:0015238: drug transmembrane transporter activity3.72E-02
91GO:0005096: GTPase activator activity3.72E-02
92GO:0050897: cobalt ion binding3.98E-02
93GO:0030145: manganese ion binding3.98E-02
94GO:0016491: oxidoreductase activity4.11E-02
95GO:0003746: translation elongation factor activity4.25E-02
96GO:0000987: core promoter proximal region sequence-specific DNA binding4.39E-02
97GO:0004842: ubiquitin-protein transferase activity4.40E-02
98GO:0008233: peptidase activity4.61E-02
99GO:0042393: histone binding4.67E-02
100GO:0061630: ubiquitin protein ligase activity4.93E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane4.42E-09
2GO:0005783: endoplasmic reticulum2.43E-06
3GO:0030134: ER to Golgi transport vesicle2.51E-06
4GO:0016021: integral component of membrane4.08E-06
5GO:0005788: endoplasmic reticulum lumen3.13E-05
6GO:0005901: caveola5.15E-04
7GO:0005789: endoplasmic reticulum membrane5.33E-04
8GO:0005795: Golgi stack8.11E-04
9GO:0030139: endocytic vesicle8.37E-04
10GO:0005968: Rab-protein geranylgeranyltransferase complex1.19E-03
11GO:0030660: Golgi-associated vesicle membrane1.59E-03
12GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.59E-03
13GO:0000164: protein phosphatase type 1 complex2.03E-03
14GO:0009504: cell plate2.24E-03
15GO:0005801: cis-Golgi network3.00E-03
16GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.10E-03
17GO:0019005: SCF ubiquitin ligase complex4.50E-03
18GO:0008180: COP9 signalosome5.32E-03
19GO:0031901: early endosome membrane5.32E-03
20GO:0030665: clathrin-coated vesicle membrane5.97E-03
21GO:0046658: anchored component of plasma membrane6.56E-03
22GO:0017119: Golgi transport complex6.65E-03
23GO:0005740: mitochondrial envelope6.65E-03
24GO:0031902: late endosome membrane6.78E-03
25GO:0031201: SNARE complex6.78E-03
26GO:0005765: lysosomal membrane7.35E-03
27GO:0031012: extracellular matrix8.84E-03
28GO:0005774: vacuolar membrane1.04E-02
29GO:0005769: early endosome1.13E-02
30GO:0048046: apoplast1.15E-02
31GO:0005834: heterotrimeric G-protein complex1.25E-02
32GO:0005618: cell wall1.38E-02
33GO:0005741: mitochondrial outer membrane1.39E-02
34GO:0005839: proteasome core complex1.39E-02
35GO:0031225: anchored component of membrane1.87E-02
36GO:0019898: extrinsic component of membrane2.18E-02
37GO:0005622: intracellular2.27E-02
38GO:0016592: mediator complex2.40E-02
39GO:0005773: vacuole2.53E-02
40GO:0005887: integral component of plasma membrane2.54E-02
41GO:0032580: Golgi cisterna membrane2.62E-02
42GO:0016020: membrane3.26E-02
43GO:0000151: ubiquitin ligase complex3.59E-02
44GO:0005643: nuclear pore3.59E-02
45GO:0031969: chloroplast membrane4.69E-02
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Gene type



Gene DE type