Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031508: pericentric heterochromatin assembly0.00E+00
2GO:1901485: positive regulation of transcription factor catabolic process0.00E+00
3GO:0000271: polysaccharide biosynthetic process1.97E-05
4GO:0080164: regulation of nitric oxide metabolic process8.61E-05
5GO:0019354: siroheme biosynthetic process8.61E-05
6GO:0071497: cellular response to freezing2.04E-04
7GO:0051592: response to calcium ion2.04E-04
8GO:0010424: DNA methylation on cytosine within a CG sequence2.04E-04
9GO:0090309: positive regulation of methylation-dependent chromatin silencing2.04E-04
10GO:0032776: DNA methylation on cytosine3.42E-04
11GO:0006556: S-adenosylmethionine biosynthetic process3.42E-04
12GO:0019722: calcium-mediated signaling4.16E-04
13GO:0032456: endocytic recycling4.92E-04
14GO:0045489: pectin biosynthetic process5.23E-04
15GO:0046345: abscisic acid catabolic process6.55E-04
16GO:0009828: plant-type cell wall loosening7.72E-04
17GO:0007267: cell-cell signaling8.18E-04
18GO:2000762: regulation of phenylpropanoid metabolic process8.29E-04
19GO:0060918: auxin transport1.01E-03
20GO:1900425: negative regulation of defense response to bacterium1.01E-03
21GO:0006555: methionine metabolic process1.01E-03
22GO:0010411: xyloglucan metabolic process1.07E-03
23GO:0009612: response to mechanical stimulus1.20E-03
24GO:0009554: megasporogenesis1.20E-03
25GO:0010038: response to metal ion1.41E-03
26GO:0016051: carbohydrate biosynthetic process1.48E-03
27GO:0030162: regulation of proteolysis1.63E-03
28GO:0042542: response to hydrogen peroxide1.82E-03
29GO:0048193: Golgi vesicle transport1.86E-03
30GO:0048574: long-day photoperiodism, flowering1.86E-03
31GO:0010200: response to chitin1.92E-03
32GO:0042546: cell wall biogenesis1.97E-03
33GO:0051865: protein autoubiquitination2.10E-03
34GO:0009638: phototropism2.35E-03
35GO:0006779: porphyrin-containing compound biosynthetic process2.35E-03
36GO:0043069: negative regulation of programmed cell death2.61E-03
37GO:0006325: chromatin organization2.61E-03
38GO:0010216: maintenance of DNA methylation2.87E-03
39GO:0000038: very long-chain fatty acid metabolic process2.87E-03
40GO:0009751: response to salicylic acid2.95E-03
41GO:0016024: CDP-diacylglycerol biosynthetic process3.15E-03
42GO:0018107: peptidyl-threonine phosphorylation3.43E-03
43GO:0071555: cell wall organization3.43E-03
44GO:0034605: cellular response to heat3.73E-03
45GO:0010143: cutin biosynthetic process3.73E-03
46GO:0009969: xyloglucan biosynthetic process4.03E-03
47GO:0009873: ethylene-activated signaling pathway4.16E-03
48GO:0005992: trehalose biosynthetic process4.65E-03
49GO:0019953: sexual reproduction4.98E-03
50GO:0016567: protein ubiquitination5.22E-03
51GO:0016998: cell wall macromolecule catabolic process5.32E-03
52GO:0009409: response to cold5.44E-03
53GO:0010017: red or far-red light signaling pathway5.66E-03
54GO:0006730: one-carbon metabolic process5.66E-03
55GO:0040007: growth6.01E-03
56GO:0009958: positive gravitropism7.48E-03
57GO:0009741: response to brassinosteroid7.48E-03
58GO:0010268: brassinosteroid homeostasis7.48E-03
59GO:0009646: response to absence of light7.87E-03
60GO:0016132: brassinosteroid biosynthetic process8.66E-03
61GO:0010583: response to cyclopentenone9.07E-03
62GO:0009826: unidimensional cell growth9.21E-03
63GO:1901657: glycosyl compound metabolic process9.48E-03
64GO:0009639: response to red or far red light9.91E-03
65GO:0016125: sterol metabolic process9.91E-03
66GO:0001666: response to hypoxia1.12E-02
67GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.17E-02
68GO:0080167: response to karrikin1.19E-02
69GO:0016311: dephosphorylation1.31E-02
70GO:0048767: root hair elongation1.40E-02
71GO:0045454: cell redox homeostasis1.42E-02
72GO:0010218: response to far red light1.45E-02
73GO:0048527: lateral root development1.50E-02
74GO:0045087: innate immune response1.60E-02
75GO:0009637: response to blue light1.60E-02
76GO:0030154: cell differentiation1.70E-02
77GO:0009733: response to auxin1.76E-02
78GO:0010114: response to red light1.92E-02
79GO:0031347: regulation of defense response2.19E-02
80GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.19E-02
81GO:0009664: plant-type cell wall organization2.25E-02
82GO:0009809: lignin biosynthetic process2.37E-02
83GO:0006486: protein glycosylation2.37E-02
84GO:0009585: red, far-red light phototransduction2.37E-02
85GO:0051603: proteolysis involved in cellular protein catabolic process2.43E-02
86GO:0009909: regulation of flower development2.55E-02
87GO:0016569: covalent chromatin modification2.92E-02
88GO:0009738: abscisic acid-activated signaling pathway3.02E-02
89GO:0018105: peptidyl-serine phosphorylation3.11E-02
90GO:0035556: intracellular signal transduction3.29E-02
91GO:0009845: seed germination3.78E-02
92GO:0006633: fatty acid biosynthetic process4.20E-02
93GO:0040008: regulation of growth4.34E-02
94GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.86E-02
95GO:0007166: cell surface receptor signaling pathway4.94E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity8.61E-05
3GO:0010295: (+)-abscisic acid 8'-hydroxylase activity3.42E-04
4GO:0010429: methyl-CpNpN binding3.42E-04
5GO:0004478: methionine adenosyltransferase activity3.42E-04
6GO:0010428: methyl-CpNpG binding3.42E-04
7GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.51E-04
8GO:0033843: xyloglucan 6-xylosyltransferase activity4.92E-04
9GO:0016758: transferase activity, transferring hexosyl groups5.31E-04
10GO:0010385: double-stranded methylated DNA binding6.55E-04
11GO:0035252: UDP-xylosyltransferase activity1.01E-03
12GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.01E-03
13GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.01E-03
14GO:0019900: kinase binding1.20E-03
15GO:0004805: trehalose-phosphatase activity2.61E-03
16GO:0008327: methyl-CpG binding2.87E-03
17GO:0003712: transcription cofactor activity4.03E-03
18GO:0008134: transcription factor binding4.65E-03
19GO:0004842: ubiquitin-protein transferase activity5.61E-03
20GO:0004402: histone acetyltransferase activity7.10E-03
21GO:0016762: xyloglucan:xyloglucosyl transferase activity8.66E-03
22GO:0016759: cellulose synthase activity9.91E-03
23GO:0016791: phosphatase activity9.91E-03
24GO:0016722: oxidoreductase activity, oxidizing metal ions1.03E-02
25GO:0016798: hydrolase activity, acting on glycosyl bonds1.26E-02
26GO:0102483: scopolin beta-glucosidase activity1.26E-02
27GO:0004871: signal transducer activity1.49E-02
28GO:0044212: transcription regulatory region DNA binding1.52E-02
29GO:0008422: beta-glucosidase activity1.70E-02
30GO:0042393: histone binding1.76E-02
31GO:0004185: serine-type carboxypeptidase activity1.92E-02
32GO:0016757: transferase activity, transferring glycosyl groups2.18E-02
33GO:0016298: lipase activity2.43E-02
34GO:0004672: protein kinase activity2.47E-02
35GO:0031625: ubiquitin protein ligase binding2.55E-02
36GO:0003677: DNA binding2.59E-02
37GO:0015035: protein disulfide oxidoreductase activity3.11E-02
38GO:0016746: transferase activity, transferring acyl groups3.11E-02
39GO:0043565: sequence-specific DNA binding3.95E-02
40GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.27E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall3.92E-06
2GO:0031225: anchored component of membrane7.54E-05
3GO:0005794: Golgi apparatus2.87E-04
4GO:0035619: root hair tip4.92E-04
5GO:0005615: extracellular space9.41E-04
6GO:0032588: trans-Golgi network membrane1.01E-03
7GO:0009506: plasmodesma1.10E-03
8GO:0010369: chromocenter1.20E-03
9GO:0005576: extracellular region1.82E-03
10GO:0048046: apoplast2.01E-03
11GO:0005720: nuclear heterochromatin2.10E-03
12GO:0031901: early endosome membrane2.10E-03
13GO:0000139: Golgi membrane5.44E-03
14GO:0015629: actin cytoskeleton6.01E-03
15GO:0046658: anchored component of plasma membrane8.18E-03
16GO:0005618: cell wall8.27E-03
17GO:0005886: plasma membrane1.06E-02
18GO:0019005: SCF ubiquitin ligase complex1.35E-02
19GO:0016021: integral component of membrane2.64E-02
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Gene type



Gene DE type