GO Enrichment Analysis of Co-expressed Genes with
AT5G52960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010430: fatty acid omega-oxidation | 0.00E+00 |
| 2 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 3 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 4 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 9 | GO:0006412: translation | 1.16E-12 |
| 10 | GO:0032544: plastid translation | 9.72E-09 |
| 11 | GO:0042254: ribosome biogenesis | 1.14E-08 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 2.01E-07 |
| 13 | GO:0009735: response to cytokinin | 9.54E-06 |
| 14 | GO:0042372: phylloquinone biosynthetic process | 4.98E-05 |
| 15 | GO:0009658: chloroplast organization | 5.87E-05 |
| 16 | GO:0009772: photosynthetic electron transport in photosystem II | 6.70E-05 |
| 17 | GO:0042759: long-chain fatty acid biosynthetic process | 1.31E-04 |
| 18 | GO:0010206: photosystem II repair | 1.34E-04 |
| 19 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.58E-04 |
| 20 | GO:0010115: regulation of abscisic acid biosynthetic process | 3.03E-04 |
| 21 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.03E-04 |
| 22 | GO:0006568: tryptophan metabolic process | 3.03E-04 |
| 23 | GO:0010207: photosystem II assembly | 3.34E-04 |
| 24 | GO:0010143: cutin biosynthetic process | 3.34E-04 |
| 25 | GO:0010025: wax biosynthetic process | 4.19E-04 |
| 26 | GO:0015840: urea transport | 4.99E-04 |
| 27 | GO:0090391: granum assembly | 4.99E-04 |
| 28 | GO:0033014: tetrapyrrole biosynthetic process | 7.14E-04 |
| 29 | GO:0006168: adenine salvage | 7.14E-04 |
| 30 | GO:0006986: response to unfolded protein | 7.14E-04 |
| 31 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.14E-04 |
| 32 | GO:0006166: purine ribonucleoside salvage | 7.14E-04 |
| 33 | GO:0071484: cellular response to light intensity | 7.14E-04 |
| 34 | GO:0009102: biotin biosynthetic process | 7.14E-04 |
| 35 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.14E-04 |
| 36 | GO:0015979: photosynthesis | 8.10E-04 |
| 37 | GO:0042335: cuticle development | 8.42E-04 |
| 38 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 9.47E-04 |
| 39 | GO:0016042: lipid catabolic process | 1.14E-03 |
| 40 | GO:0010236: plastoquinone biosynthetic process | 1.20E-03 |
| 41 | GO:0044209: AMP salvage | 1.20E-03 |
| 42 | GO:0006665: sphingolipid metabolic process | 1.20E-03 |
| 43 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.20E-03 |
| 44 | GO:0035435: phosphate ion transmembrane transport | 1.47E-03 |
| 45 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.47E-03 |
| 46 | GO:0006751: glutathione catabolic process | 1.47E-03 |
| 47 | GO:0010027: thylakoid membrane organization | 1.58E-03 |
| 48 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.76E-03 |
| 49 | GO:0017148: negative regulation of translation | 1.76E-03 |
| 50 | GO:0009610: response to symbiotic fungus | 2.06E-03 |
| 51 | GO:0010196: nonphotochemical quenching | 2.06E-03 |
| 52 | GO:0048564: photosystem I assembly | 2.39E-03 |
| 53 | GO:0008610: lipid biosynthetic process | 2.39E-03 |
| 54 | GO:0006526: arginine biosynthetic process | 2.73E-03 |
| 55 | GO:0030001: metal ion transport | 2.94E-03 |
| 56 | GO:0006631: fatty acid metabolic process | 3.07E-03 |
| 57 | GO:0006783: heme biosynthetic process | 3.08E-03 |
| 58 | GO:0015780: nucleotide-sugar transport | 3.08E-03 |
| 59 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.46E-03 |
| 60 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.46E-03 |
| 61 | GO:0006535: cysteine biosynthetic process from serine | 3.84E-03 |
| 62 | GO:0045036: protein targeting to chloroplast | 3.84E-03 |
| 63 | GO:0006949: syncytium formation | 3.84E-03 |
| 64 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.84E-03 |
| 65 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.24E-03 |
| 66 | GO:0009773: photosynthetic electron transport in photosystem I | 4.24E-03 |
| 67 | GO:0009767: photosynthetic electron transport chain | 5.08E-03 |
| 68 | GO:0006833: water transport | 6.43E-03 |
| 69 | GO:0019344: cysteine biosynthetic process | 6.91E-03 |
| 70 | GO:0000027: ribosomal large subunit assembly | 6.91E-03 |
| 71 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.95E-03 |
| 72 | GO:0009790: embryo development | 9.28E-03 |
| 73 | GO:0010091: trichome branching | 9.49E-03 |
| 74 | GO:0006284: base-excision repair | 9.49E-03 |
| 75 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.00E-02 |
| 76 | GO:0006633: fatty acid biosynthetic process | 1.00E-02 |
| 77 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 78 | GO:0006520: cellular amino acid metabolic process | 1.12E-02 |
| 79 | GO:0015986: ATP synthesis coupled proton transport | 1.18E-02 |
| 80 | GO:0009791: post-embryonic development | 1.24E-02 |
| 81 | GO:0030163: protein catabolic process | 1.42E-02 |
| 82 | GO:0009828: plant-type cell wall loosening | 1.49E-02 |
| 83 | GO:0009567: double fertilization forming a zygote and endosperm | 1.49E-02 |
| 84 | GO:0007267: cell-cell signaling | 1.55E-02 |
| 85 | GO:0016126: sterol biosynthetic process | 1.68E-02 |
| 86 | GO:0006970: response to osmotic stress | 1.84E-02 |
| 87 | GO:0016311: dephosphorylation | 1.96E-02 |
| 88 | GO:0009817: defense response to fungus, incompatible interaction | 2.03E-02 |
| 89 | GO:0009813: flavonoid biosynthetic process | 2.11E-02 |
| 90 | GO:0007568: aging | 2.25E-02 |
| 91 | GO:0006839: mitochondrial transport | 2.64E-02 |
| 92 | GO:0010114: response to red light | 2.88E-02 |
| 93 | GO:0008643: carbohydrate transport | 3.05E-02 |
| 94 | GO:0009664: plant-type cell wall organization | 3.39E-02 |
| 95 | GO:0042538: hyperosmotic salinity response | 3.39E-02 |
| 96 | GO:0008152: metabolic process | 3.44E-02 |
| 97 | GO:0009553: embryo sac development | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 2 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 8 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 2.75E-13 |
| 10 | GO:0003735: structural constituent of ribosome | 1.25E-12 |
| 11 | GO:0016851: magnesium chelatase activity | 7.65E-06 |
| 12 | GO:0043023: ribosomal large subunit binding | 7.65E-06 |
| 13 | GO:0005528: FK506 binding | 1.79E-05 |
| 14 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.53E-05 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.60E-05 |
| 16 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.31E-04 |
| 17 | GO:0015200: methylammonium transmembrane transporter activity | 1.31E-04 |
| 18 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.31E-04 |
| 19 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.31E-04 |
| 20 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.31E-04 |
| 21 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.31E-04 |
| 22 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.31E-04 |
| 23 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.03E-04 |
| 24 | GO:0003839: gamma-glutamylcyclotransferase activity | 3.03E-04 |
| 25 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 3.03E-04 |
| 26 | GO:0046593: mandelonitrile lyase activity | 3.03E-04 |
| 27 | GO:0016788: hydrolase activity, acting on ester bonds | 4.92E-04 |
| 28 | GO:0005504: fatty acid binding | 4.99E-04 |
| 29 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.99E-04 |
| 30 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.99E-04 |
| 31 | GO:0070330: aromatase activity | 4.99E-04 |
| 32 | GO:0003999: adenine phosphoribosyltransferase activity | 7.14E-04 |
| 33 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 7.14E-04 |
| 34 | GO:0008097: 5S rRNA binding | 7.14E-04 |
| 35 | GO:0052689: carboxylic ester hydrolase activity | 7.72E-04 |
| 36 | GO:0043495: protein anchor | 9.47E-04 |
| 37 | GO:0045430: chalcone isomerase activity | 9.47E-04 |
| 38 | GO:0015204: urea transmembrane transporter activity | 9.47E-04 |
| 39 | GO:0004659: prenyltransferase activity | 9.47E-04 |
| 40 | GO:0016836: hydro-lyase activity | 9.47E-04 |
| 41 | GO:0004045: aminoacyl-tRNA hydrolase activity | 9.47E-04 |
| 42 | GO:0004040: amidase activity | 1.20E-03 |
| 43 | GO:0018685: alkane 1-monooxygenase activity | 1.20E-03 |
| 44 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.20E-03 |
| 45 | GO:0009922: fatty acid elongase activity | 1.20E-03 |
| 46 | GO:0016208: AMP binding | 1.47E-03 |
| 47 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.47E-03 |
| 48 | GO:0008519: ammonium transmembrane transporter activity | 1.47E-03 |
| 49 | GO:0004124: cysteine synthase activity | 1.76E-03 |
| 50 | GO:0016832: aldehyde-lyase activity | 1.76E-03 |
| 51 | GO:0008236: serine-type peptidase activity | 1.95E-03 |
| 52 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.08E-03 |
| 53 | GO:0015114: phosphate ion transmembrane transporter activity | 5.08E-03 |
| 54 | GO:0008266: poly(U) RNA binding | 5.52E-03 |
| 55 | GO:0051087: chaperone binding | 7.40E-03 |
| 56 | GO:0004707: MAP kinase activity | 7.91E-03 |
| 57 | GO:0030170: pyridoxal phosphate binding | 8.83E-03 |
| 58 | GO:0004252: serine-type endopeptidase activity | 8.83E-03 |
| 59 | GO:0030570: pectate lyase activity | 8.95E-03 |
| 60 | GO:0008514: organic anion transmembrane transporter activity | 9.49E-03 |
| 61 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.12E-02 |
| 62 | GO:0010181: FMN binding | 1.18E-02 |
| 63 | GO:0042802: identical protein binding | 1.40E-02 |
| 64 | GO:0016791: phosphatase activity | 1.49E-02 |
| 65 | GO:0008483: transaminase activity | 1.55E-02 |
| 66 | GO:0015250: water channel activity | 1.68E-02 |
| 67 | GO:0005507: copper ion binding | 2.02E-02 |
| 68 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.03E-02 |
| 69 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.25E-02 |
| 70 | GO:0003993: acid phosphatase activity | 2.48E-02 |
| 71 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.64E-02 |
| 72 | GO:0042803: protein homodimerization activity | 2.66E-02 |
| 73 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.05E-02 |
| 74 | GO:0051287: NAD binding | 3.30E-02 |
| 75 | GO:0003690: double-stranded DNA binding | 3.65E-02 |
| 76 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.11E-02 |
| 77 | GO:0016491: oxidoreductase activity | 4.41E-02 |
| 78 | GO:0051082: unfolded protein binding | 4.58E-02 |
| 79 | GO:0016746: transferase activity, transferring acyl groups | 4.67E-02 |
| 80 | GO:0016887: ATPase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 3.19E-35 |
| 3 | GO:0009507: chloroplast | 8.73E-26 |
| 4 | GO:0009941: chloroplast envelope | 8.49E-24 |
| 5 | GO:0009579: thylakoid | 3.19E-15 |
| 6 | GO:0009534: chloroplast thylakoid | 1.84E-12 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 4.06E-11 |
| 8 | GO:0005840: ribosome | 6.12E-11 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 4.68E-10 |
| 10 | GO:0031977: thylakoid lumen | 2.11E-08 |
| 11 | GO:0010007: magnesium chelatase complex | 3.26E-06 |
| 12 | GO:0030095: chloroplast photosystem II | 1.02E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 1.31E-04 |
| 14 | GO:0009923: fatty acid elongase complex | 1.31E-04 |
| 15 | GO:0009547: plastid ribosome | 1.31E-04 |
| 16 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.31E-04 |
| 17 | GO:0000312: plastid small ribosomal subunit | 3.34E-04 |
| 18 | GO:0016020: membrane | 3.72E-04 |
| 19 | GO:0009509: chromoplast | 4.99E-04 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 5.12E-04 |
| 21 | GO:0015935: small ribosomal subunit | 5.61E-04 |
| 22 | GO:0031969: chloroplast membrane | 6.63E-04 |
| 23 | GO:0019898: extrinsic component of membrane | 1.04E-03 |
| 24 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.47E-03 |
| 25 | GO:0042807: central vacuole | 2.06E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 2.06E-03 |
| 27 | GO:0000326: protein storage vacuole | 2.73E-03 |
| 28 | GO:0009536: plastid | 2.95E-03 |
| 29 | GO:0000311: plastid large ribosomal subunit | 4.65E-03 |
| 30 | GO:0043234: protein complex | 6.43E-03 |
| 31 | GO:0009505: plant-type cell wall | 1.16E-02 |
| 32 | GO:0022626: cytosolic ribosome | 1.22E-02 |
| 33 | GO:0022627: cytosolic small ribosomal subunit | 1.46E-02 |
| 34 | GO:0005777: peroxisome | 1.54E-02 |
| 35 | GO:0005778: peroxisomal membrane | 1.55E-02 |
| 36 | GO:0010319: stromule | 1.55E-02 |
| 37 | GO:0030529: intracellular ribonucleoprotein complex | 1.68E-02 |
| 38 | GO:0009707: chloroplast outer membrane | 2.03E-02 |
| 39 | GO:0022625: cytosolic large ribosomal subunit | 2.23E-02 |
| 40 | GO:0005618: cell wall | 2.25E-02 |
| 41 | GO:0009706: chloroplast inner membrane | 4.58E-02 |