co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G50180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0034337: RNA folding	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
10	GO:0061635: regulation of protein complex stability	0.00E+00
11	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
12	GO:0090042: tubulin deacetylation	0.00E+00
13	GO:0045176: apical protein localization	0.00E+00
14	GO:0016553: base conversion or substitution editing	0.00E+00
15	GO:0015979: photosynthesis	5.44E-12
16	GO:0006412: translation	3.56E-09
17	GO:0010027: thylakoid membrane organization	1.98E-08
18	GO:0015995: chlorophyll biosynthetic process	3.40E-08
19	GO:0032544: plastid translation	4.60E-08
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.14E-06
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.14E-06
22	GO:0042254: ribosome biogenesis	2.69E-06
23	GO:0006000: fructose metabolic process	7.85E-06
24	GO:0009773: photosynthetic electron transport in photosystem I	1.60E-05
25	GO:0009735: response to cytokinin	7.34E-05
26	GO:0010196: nonphotochemical quenching	1.42E-04
27	GO:0043489: RNA stabilization	2.13E-04
28	GO:0000481: maturation of 5S rRNA	2.13E-04
29	GO:0042371: vitamin K biosynthetic process	2.13E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	2.13E-04
31	GO:0006002: fructose 6-phosphate metabolic process	2.25E-04
32	GO:0071482: cellular response to light stimulus	2.25E-04
33	GO:0009658: chloroplast organization	2.41E-04
34	GO:0010206: photosystem II repair	2.74E-04
35	GO:0018298: protein-chromophore linkage	4.71E-04
36	GO:0010270: photosystem II oxygen evolving complex assembly	4.76E-04
37	GO:0006094: gluconeogenesis	5.75E-04
38	GO:0005986: sucrose biosynthetic process	5.75E-04
39	GO:0019253: reductive pentose-phosphate cycle	6.47E-04
40	GO:0009451: RNA modification	7.17E-04
41	GO:0006518: peptide metabolic process	7.74E-04
42	GO:0051604: protein maturation	7.74E-04
43	GO:1902448: positive regulation of shade avoidance	7.74E-04
44	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.74E-04
45	GO:0090391: granum assembly	7.74E-04
46	GO:0009793: embryo development ending in seed dormancy	1.08E-03
47	GO:1901332: negative regulation of lateral root development	1.10E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.10E-03
49	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.10E-03
50	GO:0009306: protein secretion	1.38E-03
51	GO:0010021: amylopectin biosynthetic process	1.47E-03
52	GO:0009765: photosynthesis, light harvesting	1.47E-03
53	GO:0045727: positive regulation of translation	1.47E-03
54	GO:0015994: chlorophyll metabolic process	1.47E-03
55	GO:0032543: mitochondrial translation	1.87E-03
56	GO:0010236: plastoquinone biosynthetic process	1.87E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	1.87E-03
58	GO:0019252: starch biosynthetic process	1.99E-03
59	GO:0006508: proteolysis	2.12E-03
60	GO:0006014: D-ribose metabolic process	2.31E-03
61	GO:0048827: phyllome development	2.31E-03
62	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.31E-03
63	GO:0016554: cytidine to uridine editing	2.31E-03
64	GO:0006828: manganese ion transport	2.31E-03
65	GO:0032973: amino acid export	2.31E-03
66	GO:0009854: oxidative photosynthetic carbon pathway	2.77E-03
67	GO:0010019: chloroplast-nucleus signaling pathway	2.77E-03
68	GO:1901259: chloroplast rRNA processing	2.77E-03
69	GO:0042372: phylloquinone biosynthetic process	2.77E-03
70	GO:0009772: photosynthetic electron transport in photosystem II	3.26E-03
71	GO:0043090: amino acid import	3.26E-03
72	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.26E-03
73	GO:0006605: protein targeting	3.78E-03
74	GO:0032508: DNA duplex unwinding	3.78E-03
75	GO:0010492: maintenance of shoot apical meristem identity	3.78E-03
76	GO:0008152: metabolic process	3.88E-03
77	GO:0009657: plastid organization	4.33E-03
78	GO:0009631: cold acclimation	4.62E-03
79	GO:0000373: Group II intron splicing	4.90E-03
80	GO:0048507: meristem development	4.90E-03
81	GO:0080144: amino acid homeostasis	4.90E-03
82	GO:0009637: response to blue light	5.07E-03
83	GO:0034599: cellular response to oxidative stress	5.30E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
85	GO:1900865: chloroplast RNA modification	5.50E-03
86	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
87	GO:0010114: response to red light	6.53E-03
88	GO:0006352: DNA-templated transcription, initiation	6.77E-03
89	GO:0009750: response to fructose	6.77E-03
90	GO:0006816: calcium ion transport	6.77E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	6.77E-03
92	GO:0043085: positive regulation of catalytic activity	6.77E-03
93	GO:0005983: starch catabolic process	7.44E-03
94	GO:0006006: glucose metabolic process	8.13E-03
95	GO:0010229: inflorescence development	8.13E-03
96	GO:0010540: basipetal auxin transport	8.84E-03
97	GO:0010207: photosystem II assembly	8.84E-03
98	GO:0005985: sucrose metabolic process	9.58E-03
99	GO:0010025: wax biosynthetic process	1.03E-02
100	GO:0000027: ribosomal large subunit assembly	1.11E-02
101	GO:0045454: cell redox homeostasis	1.14E-02
102	GO:0055085: transmembrane transport	1.15E-02
103	GO:0009768: photosynthesis, light harvesting in photosystem I	1.19E-02
104	GO:0016575: histone deacetylation	1.19E-02
105	GO:0006418: tRNA aminoacylation for protein translation	1.19E-02
106	GO:0016114: terpenoid biosynthetic process	1.27E-02
107	GO:0061077: chaperone-mediated protein folding	1.27E-02
108	GO:0035428: hexose transmembrane transport	1.36E-02
109	GO:0016226: iron-sulfur cluster assembly	1.36E-02
110	GO:0006012: galactose metabolic process	1.45E-02
111	GO:0006397: mRNA processing	1.57E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.72E-02
113	GO:0042335: cuticle development	1.72E-02
114	GO:0042744: hydrogen peroxide catabolic process	1.80E-02
115	GO:0006662: glycerol ether metabolic process	1.81E-02
116	GO:0046323: glucose import	1.81E-02
117	GO:0009790: embryo development	1.84E-02
118	GO:0048825: cotyledon development	2.00E-02
119	GO:0000302: response to reactive oxygen species	2.10E-02
120	GO:0030163: protein catabolic process	2.31E-02
121	GO:0009911: positive regulation of flower development	2.73E-02
122	GO:0016311: dephosphorylation	3.18E-02
123	GO:0009817: defense response to fungus, incompatible interaction	3.30E-02
124	GO:0010311: lateral root formation	3.42E-02
125	GO:0010218: response to far red light	3.54E-02
126	GO:0009409: response to cold	3.60E-02
127	GO:0016051: carbohydrate biosynthetic process	3.91E-02
128	GO:0009853: photorespiration	3.91E-02
129	GO:0045087: innate immune response	3.91E-02
130	GO:0030001: metal ion transport	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0043014: alpha-tubulin binding	0.00E+00
2	GO:0004823: leucine-tRNA ligase activity	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
8	GO:0051721: protein phosphatase 2A binding	0.00E+00
9	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0008887: glycerate kinase activity	0.00E+00
14	GO:0019843: rRNA binding	1.52E-16
15	GO:0003735: structural constituent of ribosome	2.05E-08
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.81E-07
17	GO:0005528: FK506 binding	1.35E-06
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.14E-06
19	GO:0016851: magnesium chelatase activity	1.79E-05
20	GO:0008266: poly(U) RNA binding	3.08E-05
21	GO:0043495: protein anchor	3.29E-05
22	GO:0008236: serine-type peptidase activity	3.41E-05
23	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.28E-05
24	GO:0019899: enzyme binding	1.42E-04
25	GO:0004033: aldo-keto reductase (NADP) activity	1.82E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.13E-04
27	GO:0004856: xylulokinase activity	2.13E-04
28	GO:0016168: chlorophyll binding	3.58E-04
29	GO:0003729: mRNA binding	3.68E-04
30	GO:0003723: RNA binding	4.56E-04
31	GO:0047746: chlorophyllase activity	4.76E-04
32	GO:0033201: alpha-1,4-glucan synthase activity	4.76E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.76E-04
34	GO:0016630: protochlorophyllide reductase activity	4.76E-04
35	GO:0004222: metalloendopeptidase activity	5.34E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	7.74E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.74E-04
38	GO:0004373: glycogen (starch) synthase activity	7.74E-04
39	GO:0002161: aminoacyl-tRNA editing activity	7.74E-04
40	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.92E-04
41	GO:0048487: beta-tubulin binding	1.10E-03
42	GO:0043023: ribosomal large subunit binding	1.10E-03
43	GO:0008097: 5S rRNA binding	1.10E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	1.27E-03
45	GO:0004659: prenyltransferase activity	1.47E-03
46	GO:0001053: plastid sigma factor activity	1.47E-03
47	GO:0004045: aminoacyl-tRNA hydrolase activity	1.47E-03
48	GO:0016987: sigma factor activity	1.47E-03
49	GO:0009011: starch synthase activity	1.47E-03
50	GO:0004040: amidase activity	1.87E-03
51	GO:0003959: NADPH dehydrogenase activity	1.87E-03
52	GO:0016688: L-ascorbate peroxidase activity	2.31E-03
53	GO:0004130: cytochrome-c peroxidase activity	2.31E-03
54	GO:0008237: metallopeptidase activity	2.74E-03
55	GO:0051920: peroxiredoxin activity	2.77E-03
56	GO:0004747: ribokinase activity	2.77E-03
57	GO:0016787: hydrolase activity	2.83E-03
58	GO:0004252: serine-type endopeptidase activity	2.99E-03
59	GO:0016209: antioxidant activity	3.78E-03
60	GO:0008312: 7S RNA binding	3.78E-03
61	GO:0004034: aldose 1-epimerase activity	3.78E-03
62	GO:0008865: fructokinase activity	3.78E-03
63	GO:0052747: sinapyl alcohol dehydrogenase activity	3.78E-03
64	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.00E-03
65	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.33E-03
66	GO:0005384: manganese ion transmembrane transporter activity	5.50E-03
67	GO:0008047: enzyme activator activity	6.12E-03
68	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.44E-03
69	GO:0004022: alcohol dehydrogenase (NAD) activity	8.13E-03
70	GO:0015095: magnesium ion transmembrane transporter activity	8.13E-03
71	GO:0009982: pseudouridine synthase activity	8.13E-03
72	GO:0004565: beta-galactosidase activity	8.13E-03
73	GO:0031409: pigment binding	1.03E-02
74	GO:0051536: iron-sulfur cluster binding	1.11E-02
75	GO:0004407: histone deacetylase activity	1.11E-02
76	GO:0004176: ATP-dependent peptidase activity	1.27E-02
77	GO:0047134: protein-disulfide reductase activity	1.62E-02
78	GO:0004812: aminoacyl-tRNA ligase activity	1.62E-02
79	GO:0004519: endonuclease activity	1.65E-02
80	GO:0050662: coenzyme binding	1.91E-02
81	GO:0004791: thioredoxin-disulfide reductase activity	1.91E-02
82	GO:0016853: isomerase activity	1.91E-02
83	GO:0005355: glucose transmembrane transporter activity	1.91E-02
84	GO:0004518: nuclease activity	2.20E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.31E-02
86	GO:0042802: identical protein binding	2.77E-02
87	GO:0004721: phosphoprotein phosphatase activity	3.07E-02
88	GO:0008168: methyltransferase activity	3.24E-02
89	GO:0004601: peroxidase activity	3.37E-02
90	GO:0016788: hydrolase activity, acting on ester bonds	3.43E-02
91	GO:0008233: peptidase activity	4.10E-02
92	GO:0050661: NADP binding	4.29E-02
93	GO:0030246: carbohydrate binding	4.40E-02
94	GO:0004185: serine-type carboxypeptidase activity	4.68E-02
95	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.35E-72
2	GO:0009570: chloroplast stroma	7.30E-48
3	GO:0009941: chloroplast envelope	9.16E-32
4	GO:0009535: chloroplast thylakoid membrane	4.60E-25
5	GO:0009534: chloroplast thylakoid	1.98E-22
6	GO:0009579: thylakoid	6.54E-17
7	GO:0009543: chloroplast thylakoid lumen	1.52E-16
8	GO:0031977: thylakoid lumen	5.58E-14
9	GO:0005840: ribosome	2.05E-12
10	GO:0031969: chloroplast membrane	3.76E-07
11	GO:0010007: magnesium chelatase complex	7.85E-06
12	GO:0009654: photosystem II oxygen evolving complex	6.13E-05
13	GO:0042651: thylakoid membrane	6.13E-05
14	GO:0009533: chloroplast stromal thylakoid	1.42E-04
15	GO:0019898: extrinsic component of membrane	1.83E-04
16	GO:0009515: granal stacked thylakoid	2.13E-04
17	GO:0009547: plastid ribosome	2.13E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.13E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.74E-04
20	GO:0030529: intracellular ribonucleoprotein complex	3.33E-04
21	GO:0010287: plastoglobule	3.87E-04
22	GO:0080085: signal recognition particle, chloroplast targeting	4.76E-04
23	GO:0000311: plastid large ribosomal subunit	5.07E-04
24	GO:0032040: small-subunit processome	5.07E-04
25	GO:0009526: plastid envelope	1.47E-03
26	GO:0055035: plastid thylakoid membrane	1.87E-03
27	GO:0009523: photosystem II	1.99E-03
28	GO:0009295: nucleoid	2.74E-03
29	GO:0009501: amyloplast	3.78E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.33E-03
31	GO:0016020: membrane	6.07E-03
32	GO:0000312: plastid small ribosomal subunit	8.84E-03
33	GO:0048046: apoplast	8.87E-03
34	GO:0030076: light-harvesting complex	9.58E-03
35	GO:0009706: chloroplast inner membrane	1.26E-02
36	GO:0009532: plastid stroma	1.27E-02
37	GO:0005770: late endosome	1.81E-02
38	GO:0009522: photosystem I	1.91E-02
39	GO:0010319: stromule	2.52E-02
40	GO:0009536: plastid	3.11E-02
41	GO:0015934: large ribosomal subunit	3.66E-02