GO Enrichment Analysis of Co-expressed Genes with
AT5G48220
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 6 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 7 | GO:0006412: translation | 7.44E-08 |
| 8 | GO:0009735: response to cytokinin | 6.61E-07 |
| 9 | GO:0015979: photosynthesis | 6.99E-07 |
| 10 | GO:0032544: plastid translation | 1.39E-06 |
| 11 | GO:0010206: photosystem II repair | 1.97E-06 |
| 12 | GO:0090391: granum assembly | 3.08E-06 |
| 13 | GO:0009658: chloroplast organization | 3.95E-06 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 7.06E-06 |
| 15 | GO:0010207: photosystem II assembly | 9.46E-06 |
| 16 | GO:0042254: ribosome biogenesis | 5.57E-05 |
| 17 | GO:0009772: photosynthetic electron transport in photosystem II | 6.38E-05 |
| 18 | GO:0010196: nonphotochemical quenching | 6.38E-05 |
| 19 | GO:0010027: thylakoid membrane organization | 1.24E-04 |
| 20 | GO:0042371: vitamin K biosynthetic process | 1.27E-04 |
| 21 | GO:0034337: RNA folding | 1.27E-04 |
| 22 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.27E-04 |
| 23 | GO:0043489: RNA stabilization | 1.27E-04 |
| 24 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.48E-04 |
| 25 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.94E-04 |
| 26 | GO:0032504: multicellular organism reproduction | 4.86E-04 |
| 27 | GO:0010581: regulation of starch biosynthetic process | 4.86E-04 |
| 28 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.86E-04 |
| 29 | GO:0019563: glycerol catabolic process | 4.86E-04 |
| 30 | GO:0006986: response to unfolded protein | 6.95E-04 |
| 31 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.95E-04 |
| 32 | GO:2001141: regulation of RNA biosynthetic process | 6.95E-04 |
| 33 | GO:0071484: cellular response to light intensity | 6.95E-04 |
| 34 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.95E-04 |
| 35 | GO:0010088: phloem development | 6.95E-04 |
| 36 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.95E-04 |
| 37 | GO:0080022: primary root development | 8.09E-04 |
| 38 | GO:0000413: protein peptidyl-prolyl isomerization | 8.09E-04 |
| 39 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 9.21E-04 |
| 40 | GO:0010236: plastoquinone biosynthetic process | 1.16E-03 |
| 41 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.16E-03 |
| 42 | GO:0042549: photosystem II stabilization | 1.43E-03 |
| 43 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.43E-03 |
| 44 | GO:0009451: RNA modification | 1.63E-03 |
| 45 | GO:0009099: valine biosynthetic process | 1.71E-03 |
| 46 | GO:1901259: chloroplast rRNA processing | 1.71E-03 |
| 47 | GO:0042372: phylloquinone biosynthetic process | 1.71E-03 |
| 48 | GO:0009082: branched-chain amino acid biosynthetic process | 1.71E-03 |
| 49 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.71E-03 |
| 50 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.01E-03 |
| 51 | GO:0048564: photosystem I assembly | 2.32E-03 |
| 52 | GO:0008610: lipid biosynthetic process | 2.32E-03 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 2.40E-03 |
| 54 | GO:0071482: cellular response to light stimulus | 2.65E-03 |
| 55 | GO:0009657: plastid organization | 2.65E-03 |
| 56 | GO:0019430: removal of superoxide radicals | 2.65E-03 |
| 57 | GO:0009097: isoleucine biosynthetic process | 2.65E-03 |
| 58 | GO:0030001: metal ion transport | 2.82E-03 |
| 59 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.36E-03 |
| 60 | GO:0009098: leucine biosynthetic process | 3.36E-03 |
| 61 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.36E-03 |
| 62 | GO:0045036: protein targeting to chloroplast | 3.73E-03 |
| 63 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.73E-03 |
| 64 | GO:0006535: cysteine biosynthetic process from serine | 3.73E-03 |
| 65 | GO:0006457: protein folding | 3.93E-03 |
| 66 | GO:0006352: DNA-templated transcription, initiation | 4.12E-03 |
| 67 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.12E-03 |
| 68 | GO:0009773: photosynthetic electron transport in photosystem I | 4.12E-03 |
| 69 | GO:0009073: aromatic amino acid family biosynthetic process | 4.12E-03 |
| 70 | GO:0043085: positive regulation of catalytic activity | 4.12E-03 |
| 71 | GO:0006094: gluconeogenesis | 4.93E-03 |
| 72 | GO:0010143: cutin biosynthetic process | 5.36E-03 |
| 73 | GO:0019253: reductive pentose-phosphate cycle | 5.36E-03 |
| 74 | GO:0019344: cysteine biosynthetic process | 6.71E-03 |
| 75 | GO:0000027: ribosomal large subunit assembly | 6.71E-03 |
| 76 | GO:0071369: cellular response to ethylene stimulus | 8.69E-03 |
| 77 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.69E-03 |
| 78 | GO:0009790: embryo development | 8.90E-03 |
| 79 | GO:0006633: fatty acid biosynthetic process | 9.58E-03 |
| 80 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 9.75E-03 |
| 81 | GO:0015986: ATP synthesis coupled proton transport | 1.14E-02 |
| 82 | GO:0030163: protein catabolic process | 1.38E-02 |
| 83 | GO:0009828: plant-type cell wall loosening | 1.44E-02 |
| 84 | GO:0009567: double fertilization forming a zygote and endosperm | 1.44E-02 |
| 85 | GO:0016126: sterol biosynthetic process | 1.63E-02 |
| 86 | GO:0009817: defense response to fungus, incompatible interaction | 1.97E-02 |
| 87 | GO:0009631: cold acclimation | 2.19E-02 |
| 88 | GO:0009637: response to blue light | 2.33E-02 |
| 89 | GO:0045087: innate immune response | 2.33E-02 |
| 90 | GO:0045454: cell redox homeostasis | 2.43E-02 |
| 91 | GO:0010114: response to red light | 2.80E-02 |
| 92 | GO:0042742: defense response to bacterium | 2.98E-02 |
| 93 | GO:0006397: mRNA processing | 3.12E-02 |
| 94 | GO:0009664: plant-type cell wall organization | 3.29E-02 |
| 95 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.54E-02 |
| 96 | GO:0006096: glycolytic process | 3.89E-02 |
| 97 | GO:0009409: response to cold | 4.33E-02 |
| 98 | GO:0006396: RNA processing | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 2.21E-13 |
| 7 | GO:0003735: structural constituent of ribosome | 2.60E-08 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.96E-08 |
| 9 | GO:0005528: FK506 binding | 2.69E-07 |
| 10 | GO:0016851: magnesium chelatase activity | 7.24E-06 |
| 11 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.27E-04 |
| 12 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.27E-04 |
| 13 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.27E-04 |
| 14 | GO:0004807: triose-phosphate isomerase activity | 1.27E-04 |
| 15 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.27E-04 |
| 16 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.94E-04 |
| 17 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.94E-04 |
| 18 | GO:0008266: poly(U) RNA binding | 3.20E-04 |
| 19 | GO:0004751: ribose-5-phosphate isomerase activity | 4.86E-04 |
| 20 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.86E-04 |
| 21 | GO:0051087: chaperone binding | 4.91E-04 |
| 22 | GO:0052656: L-isoleucine transaminase activity | 6.95E-04 |
| 23 | GO:0043023: ribosomal large subunit binding | 6.95E-04 |
| 24 | GO:0052654: L-leucine transaminase activity | 6.95E-04 |
| 25 | GO:0008097: 5S rRNA binding | 6.95E-04 |
| 26 | GO:0052655: L-valine transaminase activity | 6.95E-04 |
| 27 | GO:0051082: unfolded protein binding | 8.05E-04 |
| 28 | GO:0042803: protein homodimerization activity | 8.75E-04 |
| 29 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 9.21E-04 |
| 30 | GO:0004659: prenyltransferase activity | 9.21E-04 |
| 31 | GO:0001053: plastid sigma factor activity | 9.21E-04 |
| 32 | GO:0016836: hydro-lyase activity | 9.21E-04 |
| 33 | GO:0004045: aminoacyl-tRNA hydrolase activity | 9.21E-04 |
| 34 | GO:0016987: sigma factor activity | 9.21E-04 |
| 35 | GO:0004084: branched-chain-amino-acid transaminase activity | 9.21E-04 |
| 36 | GO:0003723: RNA binding | 1.17E-03 |
| 37 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.43E-03 |
| 38 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.43E-03 |
| 39 | GO:0004124: cysteine synthase activity | 1.71E-03 |
| 40 | GO:0008312: 7S RNA binding | 2.32E-03 |
| 41 | GO:0008047: enzyme activator activity | 3.73E-03 |
| 42 | GO:0031072: heat shock protein binding | 4.93E-03 |
| 43 | GO:0009982: pseudouridine synthase activity | 4.93E-03 |
| 44 | GO:0005525: GTP binding | 5.65E-03 |
| 45 | GO:0016746: transferase activity, transferring acyl groups | 6.27E-03 |
| 46 | GO:0005509: calcium ion binding | 6.85E-03 |
| 47 | GO:0030170: pyridoxal phosphate binding | 8.46E-03 |
| 48 | GO:0030570: pectate lyase activity | 8.69E-03 |
| 49 | GO:0003756: protein disulfide isomerase activity | 9.21E-03 |
| 50 | GO:0016887: ATPase activity | 1.03E-02 |
| 51 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.09E-02 |
| 52 | GO:0004791: thioredoxin-disulfide reductase activity | 1.14E-02 |
| 53 | GO:0016491: oxidoreductase activity | 1.17E-02 |
| 54 | GO:0042802: identical protein binding | 1.34E-02 |
| 55 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.38E-02 |
| 56 | GO:0003729: mRNA binding | 1.41E-02 |
| 57 | GO:0016791: phosphatase activity | 1.44E-02 |
| 58 | GO:0008483: transaminase activity | 1.50E-02 |
| 59 | GO:0016168: chlorophyll binding | 1.70E-02 |
| 60 | GO:0008236: serine-type peptidase activity | 1.90E-02 |
| 61 | GO:0005507: copper ion binding | 1.92E-02 |
| 62 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.97E-02 |
| 63 | GO:0003746: translation elongation factor activity | 2.33E-02 |
| 64 | GO:0016787: hydrolase activity | 2.43E-02 |
| 65 | GO:0004185: serine-type carboxypeptidase activity | 2.80E-02 |
| 66 | GO:0043621: protein self-association | 2.96E-02 |
| 67 | GO:0003924: GTPase activity | 2.99E-02 |
| 68 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 6.95E-53 |
| 4 | GO:0009570: chloroplast stroma | 1.08E-47 |
| 5 | GO:0009579: thylakoid | 1.08E-32 |
| 6 | GO:0009941: chloroplast envelope | 2.65E-32 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.36E-22 |
| 8 | GO:0009534: chloroplast thylakoid | 1.04E-19 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.25E-18 |
| 10 | GO:0031977: thylakoid lumen | 1.56E-17 |
| 11 | GO:0005840: ribosome | 4.67E-11 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 3.41E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 1.87E-06 |
| 14 | GO:0010007: magnesium chelatase complex | 3.08E-06 |
| 15 | GO:0030095: chloroplast photosystem II | 9.46E-06 |
| 16 | GO:0009547: plastid ribosome | 1.27E-04 |
| 17 | GO:0080085: signal recognition particle, chloroplast targeting | 2.94E-04 |
| 18 | GO:0000312: plastid small ribosomal subunit | 3.20E-04 |
| 19 | GO:0009509: chromoplast | 4.86E-04 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.43E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 1.51E-03 |
| 22 | GO:0016020: membrane | 1.64E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 2.01E-03 |
| 24 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.65E-03 |
| 25 | GO:0042644: chloroplast nucleoid | 3.00E-03 |
| 26 | GO:0055028: cortical microtubule | 3.73E-03 |
| 27 | GO:0000311: plastid large ribosomal subunit | 4.52E-03 |
| 28 | GO:0032040: small-subunit processome | 4.52E-03 |
| 29 | GO:0009508: plastid chromosome | 4.93E-03 |
| 30 | GO:0015935: small ribosomal subunit | 7.68E-03 |
| 31 | GO:0005759: mitochondrial matrix | 9.58E-03 |
| 32 | GO:0009522: photosystem I | 1.14E-02 |
| 33 | GO:0022627: cytosolic small ribosomal subunit | 1.40E-02 |
| 34 | GO:0010319: stromule | 1.50E-02 |
| 35 | GO:0009295: nucleoid | 1.50E-02 |
| 36 | GO:0009707: chloroplast outer membrane | 1.97E-02 |
| 37 | GO:0031969: chloroplast membrane | 2.03E-02 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 2.13E-02 |
| 39 | GO:0009536: plastid | 3.84E-02 |
| 40 | GO:0009706: chloroplast inner membrane | 4.44E-02 |