co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G46700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:0050732: negative regulation of peptidyl-tyrosine phosphorylation	0.00E+00
3	GO:0080094: response to trehalose-6-phosphate	0.00E+00
4	GO:0006223: uracil salvage	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0010394: homogalacturonan metabolic process	0.00E+00
7	GO:0019370: leukotriene biosynthetic process	0.00E+00
8	GO:0006633: fatty acid biosynthetic process	2.10E-06
9	GO:0006183: GTP biosynthetic process	2.01E-05
10	GO:0010583: response to cyclopentenone	1.26E-04
11	GO:0045488: pectin metabolic process	1.60E-04
12	GO:1902458: positive regulation of stomatal opening	1.60E-04
13	GO:0019510: S-adenosylhomocysteine catabolic process	1.60E-04
14	GO:0060627: regulation of vesicle-mediated transport	1.60E-04
15	GO:0006169: adenosine salvage	1.60E-04
16	GO:0048640: negative regulation of developmental growth	1.60E-04
17	GO:0010442: guard cell morphogenesis	1.60E-04
18	GO:0045037: protein import into chloroplast stroma	3.42E-04
19	GO:0015774: polysaccharide transport	3.65E-04
20	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.65E-04
21	GO:0043039: tRNA aminoacylation	3.65E-04
22	GO:0052541: plant-type cell wall cellulose metabolic process	3.65E-04
23	GO:0033353: S-adenosylmethionine cycle	3.65E-04
24	GO:0030036: actin cytoskeleton organization	3.89E-04
25	GO:0010207: photosystem II assembly	4.38E-04
26	GO:0010020: chloroplast fission	4.38E-04
27	GO:0045793: positive regulation of cell size	5.97E-04
28	GO:2001295: malonyl-CoA biosynthetic process	5.97E-04
29	GO:0006065: UDP-glucuronate biosynthetic process	5.97E-04
30	GO:0090506: axillary shoot meristem initiation	5.97E-04
31	GO:0043572: plastid fission	8.53E-04
32	GO:0055070: copper ion homeostasis	8.53E-04
33	GO:0007231: osmosensory signaling pathway	8.53E-04
34	GO:0051085: chaperone mediated protein folding requiring cofactor	8.53E-04
35	GO:0006241: CTP biosynthetic process	8.53E-04
36	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.53E-04
37	GO:0019048: modulation by virus of host morphology or physiology	8.53E-04
38	GO:0051016: barbed-end actin filament capping	8.53E-04
39	GO:0006165: nucleoside diphosphate phosphorylation	8.53E-04
40	GO:0006228: UTP biosynthetic process	8.53E-04
41	GO:0031048: chromatin silencing by small RNA	8.53E-04
42	GO:0010088: phloem development	8.53E-04
43	GO:0009411: response to UV	8.67E-04
44	GO:0071555: cell wall organization	8.68E-04
45	GO:0016117: carotenoid biosynthetic process	1.01E-03
46	GO:0009956: radial pattern formation	1.13E-03
47	GO:0009765: photosynthesis, light harvesting	1.13E-03
48	GO:0006085: acetyl-CoA biosynthetic process	1.13E-03
49	GO:0033500: carbohydrate homeostasis	1.13E-03
50	GO:0000919: cell plate assembly	1.13E-03
51	GO:0051567: histone H3-K9 methylation	1.13E-03
52	GO:0044206: UMP salvage	1.13E-03
53	GO:0010305: leaf vascular tissue pattern formation	1.17E-03
54	GO:0009741: response to brassinosteroid	1.17E-03
55	GO:0045489: pectin biosynthetic process	1.17E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	1.43E-03
57	GO:0043097: pyrimidine nucleoside salvage	1.43E-03
58	GO:0016123: xanthophyll biosynthetic process	1.43E-03
59	GO:0044209: AMP salvage	1.43E-03
60	GO:0048359: mucilage metabolic process involved in seed coat development	1.43E-03
61	GO:0016120: carotene biosynthetic process	1.43E-03
62	GO:0016132: brassinosteroid biosynthetic process	1.44E-03
63	GO:0016458: gene silencing	1.76E-03
64	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.76E-03
65	GO:0010358: leaf shaping	1.76E-03
66	GO:0006206: pyrimidine nucleobase metabolic process	1.76E-03
67	GO:1901259: chloroplast rRNA processing	2.11E-03
68	GO:0009955: adaxial/abaxial pattern specification	2.11E-03
69	GO:0010067: procambium histogenesis	2.11E-03
70	GO:0042026: protein refolding	2.11E-03
71	GO:0017148: negative regulation of translation	2.11E-03
72	GO:0006694: steroid biosynthetic process	2.11E-03
73	GO:0015995: chlorophyll biosynthetic process	2.43E-03
74	GO:0000082: G1/S transition of mitotic cell cycle	2.48E-03
75	GO:0045995: regulation of embryonic development	2.48E-03
76	GO:0006955: immune response	2.48E-03
77	GO:0051693: actin filament capping	2.48E-03
78	GO:0071669: plant-type cell wall organization or biogenesis	2.48E-03
79	GO:0010444: guard mother cell differentiation	2.48E-03
80	GO:0030244: cellulose biosynthetic process	2.69E-03
81	GO:0006875: cellular metal ion homeostasis	2.88E-03
82	GO:2000070: regulation of response to water deprivation	2.88E-03
83	GO:0045010: actin nucleation	2.88E-03
84	GO:0007155: cell adhesion	2.88E-03
85	GO:0009819: drought recovery	2.88E-03
86	GO:0009834: plant-type secondary cell wall biogenesis	2.96E-03
87	GO:0032544: plastid translation	3.29E-03
88	GO:0009808: lignin metabolic process	3.29E-03
89	GO:0015996: chlorophyll catabolic process	3.29E-03
90	GO:0009827: plant-type cell wall modification	3.29E-03
91	GO:0007186: G-protein coupled receptor signaling pathway	3.29E-03
92	GO:0010233: phloem transport	3.29E-03
93	GO:0006526: arginine biosynthetic process	3.29E-03
94	GO:0000902: cell morphogenesis	3.72E-03
95	GO:0015780: nucleotide-sugar transport	3.72E-03
96	GO:0055114: oxidation-reduction process	3.88E-03
97	GO:0009826: unidimensional cell growth	3.92E-03
98	GO:0006631: fatty acid metabolic process	4.03E-03
99	GO:0042761: very long-chain fatty acid biosynthetic process	4.17E-03
100	GO:0030422: production of siRNA involved in RNA interference	4.64E-03
101	GO:0006949: syncytium formation	4.64E-03
102	GO:0018119: peptidyl-cysteine S-nitrosylation	5.12E-03
103	GO:0006816: calcium ion transport	5.12E-03
104	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.64E-03
105	GO:0010102: lateral root morphogenesis	6.14E-03
106	GO:0010223: secondary shoot formation	6.67E-03
107	GO:0010540: basipetal auxin transport	6.67E-03
108	GO:0009933: meristem structural organization	6.67E-03
109	GO:0007015: actin filament organization	6.67E-03
110	GO:0070588: calcium ion transmembrane transport	7.22E-03
111	GO:0009825: multidimensional cell growth	7.22E-03
112	GO:0046688: response to copper ion	7.22E-03
113	GO:0006071: glycerol metabolic process	7.79E-03
114	GO:0010025: wax biosynthetic process	7.79E-03
115	GO:0009116: nucleoside metabolic process	8.38E-03
116	GO:0051302: regulation of cell division	8.97E-03
117	GO:0019953: sexual reproduction	8.97E-03
118	GO:0006418: tRNA aminoacylation for protein translation	8.97E-03
119	GO:0010026: trichome differentiation	8.97E-03
120	GO:0007017: microtubule-based process	8.97E-03
121	GO:0016998: cell wall macromolecule catabolic process	9.59E-03
122	GO:0061077: chaperone-mediated protein folding	9.59E-03
123	GO:0006306: DNA methylation	9.59E-03
124	GO:0006730: one-carbon metabolic process	1.02E-02
125	GO:0007005: mitochondrion organization	1.02E-02
126	GO:0030245: cellulose catabolic process	1.02E-02
127	GO:0040007: growth	1.09E-02
128	GO:0001944: vasculature development	1.09E-02
129	GO:0009294: DNA mediated transformation	1.09E-02
130	GO:0010089: xylem development	1.15E-02
131	GO:0042127: regulation of cell proliferation	1.15E-02
132	GO:0019722: calcium-mediated signaling	1.15E-02
133	GO:0010051: xylem and phloem pattern formation	1.29E-02
134	GO:0010087: phloem or xylem histogenesis	1.29E-02
135	GO:0042335: cuticle development	1.29E-02
136	GO:0000271: polysaccharide biosynthetic process	1.29E-02
137	GO:0010182: sugar mediated signaling pathway	1.36E-02
138	GO:0006342: chromatin silencing	1.36E-02
139	GO:0010268: brassinosteroid homeostasis	1.36E-02
140	GO:0006520: cellular amino acid metabolic process	1.36E-02
141	GO:0009734: auxin-activated signaling pathway	1.37E-02
142	GO:0007018: microtubule-based movement	1.43E-02
143	GO:0019252: starch biosynthetic process	1.50E-02
144	GO:0071554: cell wall organization or biogenesis	1.58E-02
145	GO:0032502: developmental process	1.65E-02
146	GO:0007264: small GTPase mediated signal transduction	1.65E-02
147	GO:0016032: viral process	1.65E-02
148	GO:0010090: trichome morphogenesis	1.73E-02
149	GO:0009828: plant-type cell wall loosening	1.81E-02
150	GO:0016125: sterol metabolic process	1.81E-02
151	GO:0007267: cell-cell signaling	1.89E-02
152	GO:0051607: defense response to virus	1.97E-02
153	GO:0009409: response to cold	1.98E-02
154	GO:0010027: thylakoid membrane organization	2.05E-02
155	GO:0009911: positive regulation of flower development	2.05E-02
156	GO:0009816: defense response to bacterium, incompatible interaction	2.13E-02
157	GO:0009607: response to biotic stimulus	2.13E-02
158	GO:0009627: systemic acquired resistance	2.22E-02
159	GO:0009658: chloroplast organization	2.25E-02
160	GO:0042254: ribosome biogenesis	2.29E-02
161	GO:0005975: carbohydrate metabolic process	2.35E-02
162	GO:0046686: response to cadmium ion	2.44E-02
163	GO:0008219: cell death	2.47E-02
164	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
165	GO:0009813: flavonoid biosynthetic process	2.56E-02
166	GO:0009832: plant-type cell wall biogenesis	2.56E-02
167	GO:0048366: leaf development	2.65E-02
168	GO:0007568: aging	2.74E-02
169	GO:0009867: jasmonic acid mediated signaling pathway	2.93E-02
170	GO:0006839: mitochondrial transport	3.21E-02
171	GO:0045454: cell redox homeostasis	3.34E-02
172	GO:0042542: response to hydrogen peroxide	3.41E-02
173	GO:0009926: auxin polar transport	3.51E-02
174	GO:0009744: response to sucrose	3.51E-02
175	GO:0042546: cell wall biogenesis	3.61E-02
176	GO:0008643: carbohydrate transport	3.71E-02
177	GO:0009965: leaf morphogenesis	3.81E-02
178	GO:0006629: lipid metabolic process	4.11E-02
179	GO:0009408: response to heat	4.11E-02
180	GO:0009664: plant-type cell wall organization	4.12E-02
181	GO:0042538: hyperosmotic salinity response	4.12E-02
182	GO:0009793: embryo development ending in seed dormancy	4.33E-02
183	GO:0009585: red, far-red light phototransduction	4.34E-02
184	GO:0006417: regulation of translation	4.66E-02
185	GO:0006096: glycolytic process	4.88E-02
186	GO:0048367: shoot system development	4.99E-02
187	GO:0048316: seed development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0004463: leukotriene-A4 hydrolase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
8	GO:0102344: 3-hydroxy-behenoyl-CoA dehydratase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0102345: 3-hydroxy-lignoceroyl-CoA dehydratase activity	0.00E+00
13	GO:0051920: peroxiredoxin activity	6.84E-05
14	GO:0051753: mannan synthase activity	6.84E-05
15	GO:0016209: antioxidant activity	1.18E-04
16	GO:0015088: copper uptake transmembrane transporter activity	1.60E-04
17	GO:0004001: adenosine kinase activity	1.60E-04
18	GO:0010012: steroid 22-alpha hydroxylase activity	1.60E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.60E-04
20	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.60E-04
21	GO:0004560: alpha-L-fucosidase activity	1.60E-04
22	GO:0004013: adenosylhomocysteinase activity	1.60E-04
23	GO:0042834: peptidoglycan binding	1.60E-04
24	GO:0004831: tyrosine-tRNA ligase activity	1.60E-04
25	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	1.60E-04
26	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.60E-04
27	GO:0019843: rRNA binding	2.20E-04
28	GO:0003938: IMP dehydrogenase activity	3.65E-04
29	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.65E-04
30	GO:0005525: GTP binding	5.74E-04
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.97E-04
32	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.97E-04
33	GO:0005504: fatty acid binding	5.97E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	5.97E-04
35	GO:0004075: biotin carboxylase activity	5.97E-04
36	GO:0051287: NAD binding	6.72E-04
37	GO:0035197: siRNA binding	8.53E-04
38	GO:0004550: nucleoside diphosphate kinase activity	8.53E-04
39	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.53E-04
40	GO:0003878: ATP citrate synthase activity	8.53E-04
41	GO:0004845: uracil phosphoribosyltransferase activity	1.13E-03
42	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.13E-03
43	GO:1990137: plant seed peroxidase activity	1.13E-03
44	GO:0045430: chalcone isomerase activity	1.13E-03
45	GO:0046527: glucosyltransferase activity	1.13E-03
46	GO:0003989: acetyl-CoA carboxylase activity	1.43E-03
47	GO:0008200: ion channel inhibitor activity	1.76E-03
48	GO:0003924: GTPase activity	1.80E-03
49	GO:0005507: copper ion binding	1.81E-03
50	GO:0016413: O-acetyltransferase activity	1.95E-03
51	GO:0004849: uridine kinase activity	2.11E-03
52	GO:0102391: decanoate--CoA ligase activity	2.11E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	2.48E-03
54	GO:0005544: calcium-dependent phospholipid binding	2.88E-03
55	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.72E-03
56	GO:0005381: iron ion transmembrane transporter activity	4.17E-03
57	GO:0044183: protein binding involved in protein folding	5.12E-03
58	GO:0004521: endoribonuclease activity	5.62E-03
59	GO:0005262: calcium channel activity	6.14E-03
60	GO:0004565: beta-galactosidase activity	6.14E-03
61	GO:0004725: protein tyrosine phosphatase activity	7.79E-03
62	GO:0005528: FK506 binding	8.38E-03
63	GO:0004176: ATP-dependent peptidase activity	9.59E-03
64	GO:0033612: receptor serine/threonine kinase binding	9.59E-03
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.08E-02
66	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
67	GO:0030570: pectate lyase activity	1.09E-02
68	GO:0008810: cellulase activity	1.09E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.15E-02
70	GO:0004812: aminoacyl-tRNA ligase activity	1.22E-02
71	GO:0005102: receptor binding	1.22E-02
72	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.35E-02
73	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.36E-02
74	GO:0051015: actin filament binding	1.73E-02
75	GO:0016759: cellulose synthase activity	1.81E-02
76	GO:0008237: metallopeptidase activity	1.89E-02
77	GO:0005200: structural constituent of cytoskeleton	1.89E-02
78	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.89E-02
79	GO:0004601: peroxidase activity	2.25E-02
80	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.60E-02
81	GO:0004222: metalloendopeptidase activity	2.65E-02
82	GO:0030145: manganese ion binding	2.74E-02
83	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.74E-02
84	GO:0003735: structural constituent of ribosome	3.49E-02
85	GO:0042803: protein homodimerization activity	3.50E-02
86	GO:0043621: protein self-association	3.71E-02
87	GO:0005198: structural molecule activity	3.81E-02
88	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.91E-02
89	GO:0005524: ATP binding	4.37E-02
90	GO:0003777: microtubule motor activity	4.66E-02
91	GO:0045735: nutrient reservoir activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009941: chloroplast envelope	5.52E-13
3	GO:0009570: chloroplast stroma	1.03E-11
4	GO:0009507: chloroplast	3.31E-10
5	GO:0048046: apoplast	4.95E-07
6	GO:0009579: thylakoid	5.47E-07
7	GO:0031225: anchored component of membrane	1.65E-06
8	GO:0046658: anchored component of plasma membrane	6.35E-06
9	GO:0009505: plant-type cell wall	1.13E-05
10	GO:0009534: chloroplast thylakoid	5.12E-05
11	GO:0009923: fatty acid elongase complex	1.60E-04
12	GO:0010319: stromule	1.64E-04
13	GO:0008290: F-actin capping protein complex	3.65E-04
14	GO:0005802: trans-Golgi network	5.45E-04
15	GO:0009528: plastid inner membrane	5.97E-04
16	GO:0009506: plasmodesma	6.50E-04
17	GO:0005768: endosome	7.04E-04
18	GO:0009532: plastid stroma	7.30E-04
19	GO:0005719: nuclear euchromatin	8.53E-04
20	GO:0009346: citrate lyase complex	8.53E-04
21	GO:0005874: microtubule	9.54E-04
22	GO:0031897: Tic complex	1.13E-03
23	GO:0009527: plastid outer membrane	1.13E-03
24	GO:0016020: membrane	1.20E-03
25	GO:0009536: plastid	1.29E-03
26	GO:0055035: plastid thylakoid membrane	1.43E-03
27	GO:0005618: cell wall	1.46E-03
28	GO:0000139: Golgi membrane	1.57E-03
29	GO:0005794: Golgi apparatus	1.67E-03
30	GO:0031209: SCAR complex	1.76E-03
31	GO:0009986: cell surface	2.48E-03
32	GO:0005886: plasma membrane	2.59E-03
33	GO:0015934: large ribosomal subunit	3.10E-03
34	GO:0005811: lipid particle	3.29E-03
35	GO:0005840: ribosome	3.65E-03
36	GO:0045298: tubulin complex	3.72E-03
37	GO:0005763: mitochondrial small ribosomal subunit	3.72E-03
38	GO:0031977: thylakoid lumen	4.03E-03
39	GO:0015030: Cajal body	4.17E-03
40	GO:0005884: actin filament	5.12E-03
41	GO:0000311: plastid large ribosomal subunit	5.62E-03
42	GO:0005875: microtubule associated complex	7.79E-03
43	GO:0005773: vacuole	8.29E-03
44	GO:0009706: chloroplast inner membrane	8.37E-03
45	GO:0016021: integral component of membrane	8.74E-03
46	GO:0042651: thylakoid membrane	8.97E-03
47	GO:0005576: extracellular region	9.06E-03
48	GO:0009543: chloroplast thylakoid lumen	1.05E-02
49	GO:0005871: kinesin complex	1.22E-02
50	GO:0009535: chloroplast thylakoid membrane	1.37E-02
51	GO:0022626: cytosolic ribosome	1.74E-02
52	GO:0030529: intracellular ribonucleoprotein complex	2.05E-02
53	GO:0009707: chloroplast outer membrane	2.47E-02
54	GO:0005783: endoplasmic reticulum	3.74E-02