co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G46570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0010027: thylakoid membrane organization	6.06E-06
6	GO:0042371: vitamin K biosynthetic process	3.00E-05
7	GO:0005980: glycogen catabolic process	3.00E-05
8	GO:0008616: queuosine biosynthetic process	7.58E-05
9	GO:0090391: granum assembly	1.32E-04
10	GO:0048281: inflorescence morphogenesis	1.32E-04
11	GO:0006013: mannose metabolic process	1.32E-04
12	GO:1901332: negative regulation of lateral root development	1.97E-04
13	GO:0071484: cellular response to light intensity	1.97E-04
14	GO:0009102: biotin biosynthetic process	1.97E-04
15	GO:0051639: actin filament network formation	1.97E-04
16	GO:0010239: chloroplast mRNA processing	1.97E-04
17	GO:0010148: transpiration	1.97E-04
18	GO:0042991: transcription factor import into nucleus	2.67E-04
19	GO:0051764: actin crosslink formation	2.67E-04
20	GO:0015995: chlorophyll biosynthetic process	2.85E-04
21	GO:0010236: plastoquinone biosynthetic process	3.42E-04
22	GO:0042372: phylloquinone biosynthetic process	5.02E-04
23	GO:0017148: negative regulation of translation	5.02E-04
24	GO:1901259: chloroplast rRNA processing	5.02E-04
25	GO:0070370: cellular heat acclimation	5.88E-04
26	GO:0010103: stomatal complex morphogenesis	5.88E-04
27	GO:0009772: photosynthetic electron transport in photosystem II	5.88E-04
28	GO:0010196: nonphotochemical quenching	5.88E-04
29	GO:0006605: protein targeting	6.76E-04
30	GO:0019827: stem cell population maintenance	6.76E-04
31	GO:0006353: DNA-templated transcription, termination	6.76E-04
32	GO:0009736: cytokinin-activated signaling pathway	6.82E-04
33	GO:0001558: regulation of cell growth	7.68E-04
34	GO:0010206: photosystem II repair	8.63E-04
35	GO:0009735: response to cytokinin	9.86E-04
36	GO:0006535: cysteine biosynthetic process from serine	1.06E-03
37	GO:0009790: embryo development	1.37E-03
38	GO:0010207: photosystem II assembly	1.50E-03
39	GO:0009266: response to temperature stimulus	1.50E-03
40	GO:0009944: polarity specification of adaxial/abaxial axis	1.86E-03
41	GO:0051017: actin filament bundle assembly	1.86E-03
42	GO:0019344: cysteine biosynthetic process	1.86E-03
43	GO:0051302: regulation of cell division	1.98E-03
44	GO:0016998: cell wall macromolecule catabolic process	2.11E-03
45	GO:0030245: cellulose catabolic process	2.25E-03
46	GO:0001944: vasculature development	2.38E-03
47	GO:0009306: protein secretion	2.52E-03
48	GO:0048825: cotyledon development	3.24E-03
49	GO:0009567: double fertilization forming a zygote and endosperm	3.87E-03
50	GO:0051607: defense response to virus	4.20E-03
51	GO:0009627: systemic acquired resistance	4.70E-03
52	GO:0010411: xyloglucan metabolic process	4.88E-03
53	GO:0000160: phosphorelay signal transduction system	5.41E-03
54	GO:0010311: lateral root formation	5.41E-03
55	GO:0042546: cell wall biogenesis	7.54E-03
56	GO:0009965: leaf morphogenesis	7.96E-03
57	GO:0009664: plant-type cell wall organization	8.60E-03
58	GO:0006364: rRNA processing	9.03E-03
59	GO:0006508: proteolysis	1.10E-02
60	GO:0071555: cell wall organization	1.61E-02
61	GO:0045490: pectin catabolic process	1.70E-02
62	GO:0007166: cell surface receptor signaling pathway	1.87E-02
63	GO:0010468: regulation of gene expression	1.93E-02
64	GO:0009658: chloroplast organization	2.32E-02
65	GO:0009860: pollen tube growth	2.45E-02
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
67	GO:0010200: response to chitin	2.78E-02
68	GO:0015979: photosynthesis	2.98E-02
69	GO:0045454: cell redox homeostasis	3.08E-02
70	GO:0045892: negative regulation of transcription, DNA-templated	3.11E-02
71	GO:0032259: methylation	3.47E-02
72	GO:0016042: lipid catabolic process	3.50E-02
73	GO:0006468: protein phosphorylation	3.52E-02
74	GO:0048364: root development	3.69E-02
75	GO:0009873: ethylene-activated signaling pathway	4.29E-02
76	GO:0009734: auxin-activated signaling pathway	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0004645: phosphorylase activity	3.00E-05
6	GO:0004163: diphosphomevalonate decarboxylase activity	3.00E-05
7	GO:0008184: glycogen phosphorylase activity	3.00E-05
8	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	3.00E-05
9	GO:0008479: queuine tRNA-ribosyltransferase activity	7.58E-05
10	GO:0043023: ribosomal large subunit binding	1.97E-04
11	GO:0016851: magnesium chelatase activity	1.97E-04
12	GO:0042277: peptide binding	2.67E-04
13	GO:0004659: prenyltransferase activity	2.67E-04
14	GO:0019199: transmembrane receptor protein kinase activity	2.67E-04
15	GO:0004559: alpha-mannosidase activity	5.02E-04
16	GO:0004124: cysteine synthase activity	5.02E-04
17	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.76E-04
18	GO:0030170: pyridoxal phosphate binding	1.30E-03
19	GO:0004565: beta-galactosidase activity	1.38E-03
20	GO:0030246: carbohydrate binding	1.59E-03
21	GO:0051087: chaperone binding	1.98E-03
22	GO:0004176: ATP-dependent peptidase activity	2.11E-03
23	GO:0004707: MAP kinase activity	2.11E-03
24	GO:0030570: pectate lyase activity	2.38E-03
25	GO:0008810: cellulase activity	2.38E-03
26	GO:0052689: carboxylic ester hydrolase activity	3.36E-03
27	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.40E-03
28	GO:0000156: phosphorelay response regulator activity	3.71E-03
29	GO:0051015: actin filament binding	3.71E-03
30	GO:0008237: metallopeptidase activity	4.03E-03
31	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.88E-03
32	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.23E-03
33	GO:0051539: 4 iron, 4 sulfur cluster binding	6.74E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	7.75E-03
35	GO:0043621: protein self-association	7.75E-03
36	GO:0003779: actin binding	1.13E-02
37	GO:0019843: rRNA binding	1.36E-02
38	GO:0016829: lyase activity	1.43E-02
39	GO:0004252: serine-type endopeptidase activity	1.46E-02
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.62E-02
41	GO:0005515: protein binding	1.64E-02
42	GO:0042802: identical protein binding	2.02E-02
43	GO:0008168: methyltransferase activity	2.26E-02
44	GO:0000287: magnesium ion binding	2.29E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	2.36E-02
46	GO:0042803: protein homodimerization activity	3.18E-02
47	GO:0003924: GTPase activity	3.58E-02
48	GO:0016887: ATPase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	7.12E-07
2	GO:0009570: chloroplast stroma	8.54E-06
3	GO:0009507: chloroplast	2.12E-05
4	GO:0009515: granal stacked thylakoid	3.00E-05
5	GO:0009535: chloroplast thylakoid membrane	3.16E-05
6	GO:0010007: magnesium chelatase complex	1.32E-04
7	GO:0009509: chromoplast	1.32E-04
8	GO:0032432: actin filament bundle	1.97E-04
9	GO:0009536: plastid	5.78E-04
10	GO:0048046: apoplast	6.19E-04
11	GO:0005618: cell wall	7.20E-04
12	GO:0005576: extracellular region	7.21E-04
13	GO:0009706: chloroplast inner membrane	9.54E-04
14	GO:0009941: chloroplast envelope	9.67E-04
15	GO:0005884: actin filament	1.16E-03
16	GO:0009543: chloroplast thylakoid lumen	1.18E-03
17	GO:0030095: chloroplast photosystem II	1.50E-03
18	GO:0031977: thylakoid lumen	6.94E-03
19	GO:0009579: thylakoid	9.46E-03
20	GO:0005759: mitochondrial matrix	1.59E-02
21	GO:0009505: plant-type cell wall	2.02E-02
22	GO:0031969: chloroplast membrane	2.71E-02