Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900000: regulation of anthocyanin catabolic process0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0042493: response to drug0.00E+00
13GO:0034337: RNA folding0.00E+00
14GO:0015979: photosynthesis4.85E-10
15GO:0090391: granum assembly1.13E-07
16GO:0010207: photosystem II assembly2.15E-07
17GO:0032544: plastid translation7.22E-07
18GO:0010027: thylakoid membrane organization8.90E-07
19GO:1902326: positive regulation of chlorophyll biosynthetic process1.04E-05
20GO:0010206: photosystem II repair5.02E-05
21GO:0042335: cuticle development6.31E-05
22GO:0080170: hydrogen peroxide transmembrane transport7.62E-05
23GO:0009773: photosynthetic electron transport in photosystem I1.06E-04
24GO:0016024: CDP-diacylglycerol biosynthetic process1.31E-04
25GO:0016120: carotene biosynthetic process2.04E-04
26GO:0045038: protein import into chloroplast thylakoid membrane2.04E-04
27GO:0006412: translation2.13E-04
28GO:0015995: chlorophyll biosynthetic process2.76E-04
29GO:0006655: phosphatidylglycerol biosynthetic process2.88E-04
30GO:1901259: chloroplast rRNA processing3.85E-04
31GO:0009735: response to cytokinin4.05E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway4.87E-04
33GO:0015936: coenzyme A metabolic process4.87E-04
34GO:0043489: RNA stabilization4.87E-04
35GO:0010480: microsporocyte differentiation4.87E-04
36GO:0000481: maturation of 5S rRNA4.87E-04
37GO:0042759: long-chain fatty acid biosynthetic process4.87E-04
38GO:0042371: vitamin K biosynthetic process4.87E-04
39GO:0043686: co-translational protein modification4.87E-04
40GO:1902458: positive regulation of stomatal opening4.87E-04
41GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.92E-04
42GO:0009772: photosynthetic electron transport in photosystem II4.95E-04
43GO:0010196: nonphotochemical quenching4.95E-04
44GO:0010444: guard mother cell differentiation4.95E-04
45GO:0042254: ribosome biogenesis5.43E-04
46GO:0048443: stamen development5.49E-04
47GO:0008610: lipid biosynthetic process6.17E-04
48GO:0034220: ion transmembrane transport6.72E-04
49GO:0055085: transmembrane transport9.08E-04
50GO:0009664: plant-type cell wall organization9.98E-04
51GO:0010289: homogalacturonan biosynthetic process1.05E-03
52GO:0010275: NAD(P)H dehydrogenase complex assembly1.05E-03
53GO:0043255: regulation of carbohydrate biosynthetic process1.05E-03
54GO:0010115: regulation of abscisic acid biosynthetic process1.05E-03
55GO:0010541: acropetal auxin transport1.05E-03
56GO:1903426: regulation of reactive oxygen species biosynthetic process1.05E-03
57GO:0010205: photoinhibition1.06E-03
58GO:0009828: plant-type cell wall loosening1.23E-03
59GO:0018119: peptidyl-cysteine S-nitrosylation1.42E-03
60GO:0010152: pollen maturation1.63E-03
61GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.71E-03
62GO:0048281: inflorescence morphogenesis1.71E-03
63GO:0006518: peptide metabolic process1.71E-03
64GO:0010160: formation of animal organ boundary1.71E-03
65GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.71E-03
66GO:0030244: cellulose biosynthetic process2.16E-03
67GO:0018298: protein-chromophore linkage2.16E-03
68GO:0009825: multidimensional cell growth2.34E-03
69GO:0051513: regulation of monopolar cell growth2.48E-03
70GO:0071484: cellular response to light intensity2.48E-03
71GO:0051639: actin filament network formation2.48E-03
72GO:0034059: response to anoxia2.48E-03
73GO:0010239: chloroplast mRNA processing2.48E-03
74GO:0009650: UV protection2.48E-03
75GO:0043481: anthocyanin accumulation in tissues in response to UV light2.48E-03
76GO:1901332: negative regulation of lateral root development2.48E-03
77GO:0006168: adenine salvage2.48E-03
78GO:0010148: transpiration2.48E-03
79GO:0006166: purine ribonucleoside salvage2.48E-03
80GO:0010025: wax biosynthetic process2.61E-03
81GO:0006636: unsaturated fatty acid biosynthetic process2.61E-03
82GO:0009833: plant-type primary cell wall biogenesis2.61E-03
83GO:0006833: water transport2.61E-03
84GO:0071555: cell wall organization2.77E-03
85GO:0080167: response to karrikin3.14E-03
86GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.33E-03
87GO:0051764: actin crosslink formation3.34E-03
88GO:0009765: photosynthesis, light harvesting3.34E-03
89GO:0030104: water homeostasis3.34E-03
90GO:0006183: GTP biosynthetic process3.34E-03
91GO:0045727: positive regulation of translation3.34E-03
92GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway3.34E-03
93GO:0031408: oxylipin biosynthetic process3.52E-03
94GO:0016998: cell wall macromolecule catabolic process3.52E-03
95GO:0030245: cellulose catabolic process3.86E-03
96GO:0044209: AMP salvage4.28E-03
97GO:0010236: plastoquinone biosynthetic process4.28E-03
98GO:0031365: N-terminal protein amino acid modification4.28E-03
99GO:0009306: protein secretion4.58E-03
100GO:0006869: lipid transport5.07E-03
101GO:0042549: photosystem II stabilization5.30E-03
102GO:0009913: epidermal cell differentiation5.30E-03
103GO:0060918: auxin transport5.30E-03
104GO:0016554: cytidine to uridine editing5.30E-03
105GO:0010190: cytochrome b6f complex assembly5.30E-03
106GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.30E-03
107GO:0010337: regulation of salicylic acid metabolic process5.30E-03
108GO:0018258: protein O-linked glycosylation via hydroxyproline5.30E-03
109GO:0035435: phosphate ion transmembrane transport5.30E-03
110GO:0006561: proline biosynthetic process5.30E-03
111GO:0010405: arabinogalactan protein metabolic process5.30E-03
112GO:0006751: glutathione catabolic process5.30E-03
113GO:0042631: cellular response to water deprivation5.37E-03
114GO:0010182: sugar mediated signaling pathway5.79E-03
115GO:0042372: phylloquinone biosynthetic process6.40E-03
116GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.40E-03
117GO:0017148: negative regulation of translation6.40E-03
118GO:0010019: chloroplast-nucleus signaling pathway6.40E-03
119GO:0000302: response to reactive oxygen species7.16E-03
120GO:0009395: phospholipid catabolic process7.57E-03
121GO:0070370: cellular heat acclimation7.57E-03
122GO:0048437: floral organ development7.57E-03
123GO:1900057: positive regulation of leaf senescence7.57E-03
124GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.57E-03
125GO:0010103: stomatal complex morphogenesis7.57E-03
126GO:0009658: chloroplast organization8.56E-03
127GO:0009690: cytokinin metabolic process8.81E-03
128GO:0006605: protein targeting8.81E-03
129GO:0032508: DNA duplex unwinding8.81E-03
130GO:0006353: DNA-templated transcription, termination8.81E-03
131GO:2000070: regulation of response to water deprivation8.81E-03
132GO:0015996: chlorophyll catabolic process1.01E-02
133GO:0001558: regulation of cell growth1.01E-02
134GO:0007186: G-protein coupled receptor signaling pathway1.01E-02
135GO:0009051: pentose-phosphate shunt, oxidative branch1.15E-02
136GO:0048589: developmental growth1.15E-02
137GO:1900865: chloroplast RNA modification1.29E-02
138GO:0010311: lateral root formation1.43E-02
139GO:0006949: syncytium formation1.45E-02
140GO:0006535: cysteine biosynthetic process from serine1.45E-02
141GO:0006032: chitin catabolic process1.45E-02
142GO:0009688: abscisic acid biosynthetic process1.45E-02
143GO:0042744: hydrogen peroxide catabolic process1.46E-02
144GO:0009409: response to cold1.49E-02
145GO:0009790: embryo development1.51E-02
146GO:0009631: cold acclimation1.58E-02
147GO:0000038: very long-chain fatty acid metabolic process1.60E-02
148GO:1903507: negative regulation of nucleic acid-templated transcription1.60E-02
149GO:0009750: response to fructose1.60E-02
150GO:0048229: gametophyte development1.60E-02
151GO:0006633: fatty acid biosynthetic process1.66E-02
152GO:0016051: carbohydrate biosynthetic process1.73E-02
153GO:0008361: regulation of cell size1.76E-02
154GO:0045037: protein import into chloroplast stroma1.76E-02
155GO:0006810: transport1.77E-02
156GO:0034599: cellular response to oxidative stress1.81E-02
157GO:0009725: response to hormone1.93E-02
158GO:0010102: lateral root morphogenesis1.93E-02
159GO:0006006: glucose metabolic process1.93E-02
160GO:0050826: response to freezing1.93E-02
161GO:0009718: anthocyanin-containing compound biosynthetic process1.93E-02
162GO:0010075: regulation of meristem growth1.93E-02
163GO:0009934: regulation of meristem structural organization2.11E-02
164GO:0010143: cutin biosynthetic process2.11E-02
165GO:0010540: basipetal auxin transport2.11E-02
166GO:0007166: cell surface receptor signaling pathway2.21E-02
167GO:0010167: response to nitrate2.28E-02
168GO:0071732: cellular response to nitric oxide2.28E-02
169GO:0010030: positive regulation of seed germination2.28E-02
170GO:0010053: root epidermal cell differentiation2.28E-02
171GO:0008152: metabolic process2.46E-02
172GO:0009733: response to auxin2.64E-02
173GO:0019344: cysteine biosynthetic process2.66E-02
174GO:0009944: polarity specification of adaxial/abaxial axis2.66E-02
175GO:0000027: ribosomal large subunit assembly2.66E-02
176GO:0051017: actin filament bundle assembly2.66E-02
177GO:0042538: hyperosmotic salinity response2.81E-02
178GO:0051302: regulation of cell division2.85E-02
179GO:0008299: isoprenoid biosynthetic process2.85E-02
180GO:0009695: jasmonic acid biosynthetic process2.85E-02
181GO:0007017: microtubule-based process2.85E-02
182GO:0009809: lignin biosynthetic process3.01E-02
183GO:0009826: unidimensional cell growth3.08E-02
184GO:2000022: regulation of jasmonic acid mediated signaling pathway3.25E-02
185GO:0035428: hexose transmembrane transport3.25E-02
186GO:0009411: response to UV3.46E-02
187GO:0071369: cellular response to ethylene stimulus3.46E-02
188GO:0001944: vasculature development3.46E-02
189GO:0009734: auxin-activated signaling pathway3.53E-02
190GO:0042127: regulation of cell proliferation3.67E-02
191GO:0048316: seed development3.67E-02
192GO:0007049: cell cycle3.70E-02
193GO:0009737: response to abscisic acid3.78E-02
194GO:0016117: carotenoid biosynthetic process3.89E-02
195GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.89E-02
196GO:0048653: anther development4.11E-02
197GO:0080022: primary root development4.11E-02
198GO:0000413: protein peptidyl-prolyl isomerization4.11E-02
199GO:0009958: positive gravitropism4.33E-02
200GO:0046323: glucose import4.33E-02
201GO:0015986: ATP synthesis coupled proton transport4.56E-02
202GO:0005975: carbohydrate metabolic process4.59E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0045436: lycopene beta cyclase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0038198: auxin receptor activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
9GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
12GO:0019843: rRNA binding1.97E-10
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.13E-08
14GO:0005528: FK506 binding5.65E-07
15GO:0016851: magnesium chelatase activity7.62E-05
16GO:0043023: ribosomal large subunit binding7.62E-05
17GO:0003735: structural constituent of ribosome9.50E-05
18GO:0010011: auxin binding1.32E-04
19GO:0043495: protein anchor1.32E-04
20GO:0016168: chlorophyll binding2.30E-04
21GO:0004130: cytochrome-c peroxidase activity2.88E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.88E-04
23GO:0050139: nicotinate-N-glucosyltransferase activity4.87E-04
24GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity4.87E-04
25GO:0030794: (S)-coclaurine-N-methyltransferase activity4.87E-04
26GO:0047807: cytokinin 7-beta-glucosyltransferase activity4.87E-04
27GO:0042282: hydroxymethylglutaryl-CoA reductase activity4.87E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.87E-04
29GO:0080062: cytokinin 9-beta-glucosyltransferase activity4.87E-04
30GO:0004321: fatty-acyl-CoA synthase activity4.87E-04
31GO:0042586: peptide deformylase activity4.87E-04
32GO:0045485: omega-6 fatty acid desaturase activity4.87E-04
33GO:0022891: substrate-specific transmembrane transporter activity4.92E-04
34GO:0019899: enzyme binding4.95E-04
35GO:0003938: IMP dehydrogenase activity1.05E-03
36GO:0000822: inositol hexakisphosphate binding1.05E-03
37GO:0003839: gamma-glutamylcyclotransferase activity1.05E-03
38GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.51E-03
39GO:0015250: water channel activity1.54E-03
40GO:0004565: beta-galactosidase activity1.85E-03
41GO:0008266: poly(U) RNA binding2.09E-03
42GO:0016788: hydrolase activity, acting on ester bonds2.22E-03
43GO:0001872: (1->3)-beta-D-glucan binding2.48E-03
44GO:0003999: adenine phosphoribosyltransferase activity2.48E-03
45GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.48E-03
46GO:0004345: glucose-6-phosphate dehydrogenase activity3.34E-03
47GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.34E-03
48GO:0052793: pectin acetylesterase activity3.34E-03
49GO:0019199: transmembrane receptor protein kinase activity3.34E-03
50GO:0042277: peptide binding3.34E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.34E-03
52GO:0004659: prenyltransferase activity3.34E-03
53GO:0052689: carboxylic ester hydrolase activity3.75E-03
54GO:0008810: cellulase activity4.21E-03
55GO:0016760: cellulose synthase (UDP-forming) activity4.21E-03
56GO:0004040: amidase activity4.28E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity5.30E-03
58GO:0016688: L-ascorbate peroxidase activity5.30E-03
59GO:0042578: phosphoric ester hydrolase activity5.30E-03
60GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.30E-03
61GO:0016491: oxidoreductase activity5.32E-03
62GO:0004124: cysteine synthase activity6.40E-03
63GO:0003729: mRNA binding7.09E-03
64GO:0004620: phospholipase activity7.57E-03
65GO:0016759: cellulose synthase activity8.69E-03
66GO:0008312: 7S RNA binding8.81E-03
67GO:0052747: sinapyl alcohol dehydrogenase activity8.81E-03
68GO:0004714: transmembrane receptor protein tyrosine kinase activity8.81E-03
69GO:0016746: transferase activity, transferring acyl groups9.66E-03
70GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.01E-02
71GO:0008289: lipid binding1.11E-02
72GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.15E-02
73GO:0016207: 4-coumarate-CoA ligase activity1.15E-02
74GO:0030247: polysaccharide binding1.23E-02
75GO:0008236: serine-type peptidase activity1.29E-02
76GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.36E-02
77GO:0004252: serine-type endopeptidase activity1.42E-02
78GO:0015020: glucuronosyltransferase activity1.45E-02
79GO:0004568: chitinase activity1.45E-02
80GO:0004222: metalloendopeptidase activity1.50E-02
81GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.71E-02
82GO:0008378: galactosyltransferase activity1.76E-02
83GO:0045551: cinnamyl-alcohol dehydrogenase activity1.76E-02
84GO:0003993: acid phosphatase activity1.81E-02
85GO:0009982: pseudouridine synthase activity1.93E-02
86GO:0015114: phosphate ion transmembrane transporter activity1.93E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity1.93E-02
88GO:0010329: auxin efflux transmembrane transporter activity1.93E-02
89GO:0031072: heat shock protein binding1.93E-02
90GO:0050661: NADP binding1.97E-02
91GO:0008146: sulfotransferase activity2.28E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.47E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.47E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.47E-02
95GO:0042802: identical protein binding2.53E-02
96GO:0003714: transcription corepressor activity2.66E-02
97GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.70E-02
98GO:0043424: protein histidine kinase binding2.85E-02
99GO:0033612: receptor serine/threonine kinase binding3.05E-02
100GO:0004707: MAP kinase activity3.05E-02
101GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.25E-02
102GO:0030570: pectate lyase activity3.46E-02
103GO:0003756: protein disulfide isomerase activity3.67E-02
104GO:0080044: quercetin 7-O-glucosyltransferase activity3.91E-02
105GO:0080043: quercetin 3-O-glucosyltransferase activity3.91E-02
106GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.33E-02
107GO:0005355: glucose transmembrane transporter activity4.56E-02
108GO:0050662: coenzyme binding4.56E-02
109GO:0010181: FMN binding4.56E-02
110GO:0004872: receptor activity4.80E-02
RankGO TermAdjusted P value
1GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
5GO:0009507: chloroplast2.80E-36
6GO:0009535: chloroplast thylakoid membrane4.56E-24
7GO:0009570: chloroplast stroma1.98E-22
8GO:0009579: thylakoid2.05E-20
9GO:0009534: chloroplast thylakoid2.31E-20
10GO:0009543: chloroplast thylakoid lumen5.85E-19
11GO:0009941: chloroplast envelope3.76E-18
12GO:0031977: thylakoid lumen8.26E-13
13GO:0005840: ribosome4.64E-06
14GO:0010007: magnesium chelatase complex3.55E-05
15GO:0016021: integral component of membrane8.78E-05
16GO:0009523: photosystem II9.54E-05
17GO:0031969: chloroplast membrane1.85E-04
18GO:0030095: chloroplast photosystem II1.89E-04
19GO:0009654: photosystem II oxygen evolving complex3.43E-04
20GO:0043674: columella4.87E-04
21GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.87E-04
22GO:0009533: chloroplast stromal thylakoid4.95E-04
23GO:0019898: extrinsic component of membrane8.87E-04
24GO:0030093: chloroplast photosystem I1.05E-03
25GO:0080085: signal recognition particle, chloroplast targeting1.05E-03
26GO:0032040: small-subunit processome1.63E-03
27GO:0046658: anchored component of plasma membrane1.63E-03
28GO:0009528: plastid inner membrane1.71E-03
29GO:0009509: chromoplast1.71E-03
30GO:0032432: actin filament bundle2.48E-03
31GO:0015630: microtubule cytoskeleton2.48E-03
32GO:0005618: cell wall2.71E-03
33GO:0042651: thylakoid membrane3.20E-03
34GO:0009527: plastid outer membrane3.34E-03
35GO:0016020: membrane3.76E-03
36GO:0005886: plasma membrane3.88E-03
37GO:0031225: anchored component of membrane4.46E-03
38GO:0009505: plant-type cell wall4.74E-03
39GO:0048046: apoplast4.88E-03
40GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.30E-03
41GO:0005576: extracellular region7.10E-03
42GO:0042807: central vacuole7.57E-03
43GO:0009538: photosystem I reaction center8.81E-03
44GO:0010319: stromule9.24E-03
45GO:0009295: nucleoid9.24E-03
46GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.01E-02
47GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.15E-02
48GO:0008180: COP9 signalosome1.15E-02
49GO:0010287: plastoglobule1.16E-02
50GO:0019005: SCF ubiquitin ligase complex1.36E-02
51GO:0005884: actin filament1.60E-02
52GO:0009508: plastid chromosome1.93E-02
53GO:0000312: plastid small ribosomal subunit2.11E-02
54GO:0009532: plastid stroma3.05E-02
55GO:0009536: plastid3.12E-02
56GO:0009706: chloroplast inner membrane4.28E-02
57GO:0009522: photosystem I4.56E-02
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Gene type



Gene DE type