co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0090042: tubulin deacetylation	0.00E+00
8	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
9	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
10	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0034337: RNA folding	0.00E+00
13	GO:0015979: photosynthesis	3.28E-10
14	GO:0032544: plastid translation	1.96E-09
15	GO:0042254: ribosome biogenesis	1.41E-08
16	GO:0006412: translation	1.41E-07
17	GO:0010027: thylakoid membrane organization	1.79E-07
18	GO:0009773: photosynthetic electron transport in photosystem I	1.16E-06
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.37E-06
20	GO:0018298: protein-chromophore linkage	9.64E-06
21	GO:0009735: response to cytokinin	1.62E-05
22	GO:0045038: protein import into chloroplast thylakoid membrane	1.16E-04
23	GO:0031365: N-terminal protein amino acid modification	1.16E-04
24	GO:1901259: chloroplast rRNA processing	2.28E-04
25	GO:0010196: nonphotochemical quenching	2.96E-04
26	GO:0006400: tRNA modification	2.96E-04
27	GO:0051180: vitamin transport	3.44E-04
28	GO:0030974: thiamine pyrophosphate transport	3.44E-04
29	GO:0043489: RNA stabilization	3.44E-04
30	GO:0000481: maturation of 5S rRNA	3.44E-04
31	GO:0043686: co-translational protein modification	3.44E-04
32	GO:1902458: positive regulation of stomatal opening	3.44E-04
33	GO:0071588: hydrogen peroxide mediated signaling pathway	3.44E-04
34	GO:0071482: cellular response to light stimulus	4.56E-04
35	GO:0010205: photoinhibition	6.45E-04
36	GO:0080005: photosystem stoichiometry adjustment	7.51E-04
37	GO:0010115: regulation of abscisic acid biosynthetic process	7.51E-04
38	GO:0015893: drug transport	7.51E-04
39	GO:0034755: iron ion transmembrane transport	7.51E-04
40	GO:0009662: etioplast organization	7.51E-04
41	GO:0006729: tetrahydrobiopterin biosynthetic process	7.51E-04
42	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.51E-04
43	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.51E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.51E-04
45	GO:0045036: protein targeting to chloroplast	7.52E-04
46	GO:0009658: chloroplast organization	8.64E-04
47	GO:0043085: positive regulation of catalytic activity	8.68E-04
48	GO:0015995: chlorophyll biosynthetic process	9.90E-04
49	GO:0006094: gluconeogenesis	1.12E-03
50	GO:0006000: fructose metabolic process	1.21E-03
51	GO:0006954: inflammatory response	1.21E-03
52	GO:0090391: granum assembly	1.21E-03
53	GO:0006518: peptide metabolic process	1.21E-03
54	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.21E-03
55	GO:0006636: unsaturated fatty acid biosynthetic process	1.57E-03
56	GO:0034599: cellular response to oxidative stress	1.60E-03
57	GO:0034059: response to anoxia	1.75E-03
58	GO:0010239: chloroplast mRNA processing	1.75E-03
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.75E-03
60	GO:0006424: glutamyl-tRNA aminoacylation	1.75E-03
61	GO:0055070: copper ion homeostasis	1.75E-03
62	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.75E-03
63	GO:2001141: regulation of RNA biosynthetic process	1.75E-03
64	GO:0010371: regulation of gibberellin biosynthetic process	1.75E-03
65	GO:0009768: photosynthesis, light harvesting in photosystem I	1.92E-03
66	GO:0009451: RNA modification	2.06E-03
67	GO:0031408: oxylipin biosynthetic process	2.11E-03
68	GO:0009765: photosynthesis, light harvesting	2.35E-03
69	GO:0006109: regulation of carbohydrate metabolic process	2.35E-03
70	GO:0045727: positive regulation of translation	2.35E-03
71	GO:0006546: glycine catabolic process	2.35E-03
72	GO:0006808: regulation of nitrogen utilization	2.35E-03
73	GO:0008152: metabolic process	2.97E-03
74	GO:0000304: response to singlet oxygen	3.00E-03
75	GO:0032543: mitochondrial translation	3.00E-03
76	GO:0006564: L-serine biosynthetic process	3.00E-03
77	GO:0010236: plastoquinone biosynthetic process	3.00E-03
78	GO:0035434: copper ion transmembrane transport	3.00E-03
79	GO:0006461: protein complex assembly	3.00E-03
80	GO:0009107: lipoate biosynthetic process	3.00E-03
81	GO:0006662: glycerol ether metabolic process	3.45E-03
82	GO:0010182: sugar mediated signaling pathway	3.45E-03
83	GO:0000470: maturation of LSU-rRNA	3.71E-03
84	GO:0016554: cytidine to uridine editing	3.71E-03
85	GO:0006655: phosphatidylglycerol biosynthetic process	3.71E-03
86	GO:0010190: cytochrome b6f complex assembly	3.71E-03
87	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.71E-03
88	GO:0032973: amino acid export	3.71E-03
89	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.71E-03
90	GO:0006561: proline biosynthetic process	3.71E-03
91	GO:0010405: arabinogalactan protein metabolic process	3.71E-03
92	GO:0042549: photosystem II stabilization	3.71E-03
93	GO:0042372: phylloquinone biosynthetic process	4.47E-03
94	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.47E-03
95	GO:0030488: tRNA methylation	4.47E-03
96	GO:0010189: vitamin E biosynthetic process	4.47E-03
97	GO:0009854: oxidative photosynthetic carbon pathway	4.47E-03
98	GO:0010019: chloroplast-nucleus signaling pathway	4.47E-03
99	GO:0043090: amino acid import	5.27E-03
100	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.27E-03
101	GO:0009645: response to low light intensity stimulus	5.27E-03
102	GO:0010444: guard mother cell differentiation	5.27E-03
103	GO:0009395: phospholipid catabolic process	5.27E-03
104	GO:0008610: lipid biosynthetic process	6.13E-03
105	GO:0009642: response to light intensity	6.13E-03
106	GO:0006353: DNA-templated transcription, termination	6.13E-03
107	GO:0006605: protein targeting	6.13E-03
108	GO:0032508: DNA duplex unwinding	6.13E-03
109	GO:2000070: regulation of response to water deprivation	6.13E-03
110	GO:0006002: fructose 6-phosphate metabolic process	7.03E-03
111	GO:0015996: chlorophyll catabolic process	7.03E-03
112	GO:0007186: G-protein coupled receptor signaling pathway	7.03E-03
113	GO:0009657: plastid organization	7.03E-03
114	GO:0009051: pentose-phosphate shunt, oxidative branch	7.97E-03
115	GO:0006098: pentose-phosphate shunt	7.97E-03
116	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.97E-03
117	GO:0080144: amino acid homeostasis	7.97E-03
118	GO:1900865: chloroplast RNA modification	8.96E-03
119	GO:0009631: cold acclimation	9.32E-03
120	GO:0006535: cysteine biosynthetic process from serine	1.00E-02
121	GO:0009688: abscisic acid biosynthetic process	1.00E-02
122	GO:0009637: response to blue light	1.02E-02
123	GO:0055085: transmembrane transport	1.04E-02
124	GO:0006457: protein folding	1.07E-02
125	GO:0008285: negative regulation of cell proliferation	1.11E-02
126	GO:0009073: aromatic amino acid family biosynthetic process	1.11E-02
127	GO:0006415: translational termination	1.11E-02
128	GO:0006879: cellular iron ion homeostasis	1.11E-02
129	GO:0006352: DNA-templated transcription, initiation	1.11E-02
130	GO:0009750: response to fructose	1.11E-02
131	GO:0055114: oxidation-reduction process	1.15E-02
132	GO:0030001: metal ion transport	1.17E-02
133	GO:0016024: CDP-diacylglycerol biosynthetic process	1.22E-02
134	GO:0045037: protein import into chloroplast stroma	1.22E-02
135	GO:0010114: response to red light	1.32E-02
136	GO:0010628: positive regulation of gene expression	1.33E-02
137	GO:0006006: glucose metabolic process	1.33E-02
138	GO:0009718: anthocyanin-containing compound biosynthetic process	1.33E-02
139	GO:0009767: photosynthetic electron transport chain	1.33E-02
140	GO:0005986: sucrose biosynthetic process	1.33E-02
141	GO:0009409: response to cold	1.40E-02
142	GO:0009644: response to high light intensity	1.43E-02
143	GO:0010207: photosystem II assembly	1.45E-02
144	GO:0019253: reductive pentose-phosphate cycle	1.45E-02
145	GO:0005985: sucrose metabolic process	1.58E-02
146	GO:0006364: rRNA processing	1.79E-02
147	GO:0000027: ribosomal large subunit assembly	1.83E-02
148	GO:0019344: cysteine biosynthetic process	1.83E-02
149	GO:0016575: histone deacetylation	1.96E-02
150	GO:0010073: meristem maintenance	1.96E-02
151	GO:0006096: glycolytic process	2.11E-02
152	GO:0016226: iron-sulfur cluster assembly	2.24E-02
153	GO:0035428: hexose transmembrane transport	2.24E-02
154	GO:0010227: floral organ abscission	2.38E-02
155	GO:0009561: megagametogenesis	2.53E-02
156	GO:0042127: regulation of cell proliferation	2.53E-02
157	GO:0009306: protein secretion	2.53E-02
158	GO:0016117: carotenoid biosynthetic process	2.68E-02
159	GO:0045454: cell redox homeostasis	2.76E-02
160	GO:0042335: cuticle development	2.83E-02
161	GO:0000413: protein peptidyl-prolyl isomerization	2.83E-02
162	GO:0046323: glucose import	2.99E-02
163	GO:0071554: cell wall organization or biogenesis	3.47E-02
164	GO:0000302: response to reactive oxygen species	3.47E-02
165	GO:0016032: viral process	3.64E-02
166	GO:0006397: mRNA processing	3.78E-02
167	GO:0009567: double fertilization forming a zygote and endosperm	3.98E-02
168	GO:0006413: translational initiation	4.09E-02
169	GO:0071805: potassium ion transmembrane transport	4.15E-02
170	GO:0006810: transport	4.36E-02
171	GO:0007623: circadian rhythm	4.38E-02
172	GO:0001666: response to hypoxia	4.51E-02
173	GO:0042128: nitrate assimilation	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0051721: protein phosphatase 2A binding	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0042903: tubulin deacetylase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0043014: alpha-tubulin binding	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0046608: carotenoid isomerase activity	0.00E+00
12	GO:0019843: rRNA binding	4.42E-16
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.41E-09
14	GO:0005528: FK506 binding	1.40E-07
15	GO:0003735: structural constituent of ribosome	1.49E-06
16	GO:0016168: chlorophyll binding	5.62E-06
17	GO:0004045: aminoacyl-tRNA hydrolase activity	7.42E-05
18	GO:0043495: protein anchor	7.42E-05
19	GO:0008266: poly(U) RNA binding	9.00E-05
20	GO:0022891: substrate-specific transmembrane transporter activity	2.50E-04
21	GO:0019899: enzyme binding	2.96E-04
22	GO:0090422: thiamine pyrophosphate transporter activity	3.44E-04
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.44E-04
24	GO:0042586: peptide deformylase activity	3.44E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	3.44E-04
26	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.44E-04
27	GO:0005080: protein kinase C binding	3.44E-04
28	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.44E-04
29	GO:0050139: nicotinate-N-glucosyltransferase activity	3.44E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.51E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	7.51E-04
32	GO:0008047: enzyme activator activity	7.52E-04
33	GO:0004022: alcohol dehydrogenase (NAD) activity	1.12E-03
34	GO:0031072: heat shock protein binding	1.12E-03
35	GO:0016531: copper chaperone activity	1.21E-03
36	GO:0019829: cation-transporting ATPase activity	1.21E-03
37	GO:0017150: tRNA dihydrouridine synthase activity	1.21E-03
38	GO:0016992: lipoate synthase activity	1.21E-03
39	GO:0004751: ribose-5-phosphate isomerase activity	1.21E-03
40	GO:0016491: oxidoreductase activity	1.53E-03
41	GO:0031409: pigment binding	1.57E-03
42	GO:0051536: iron-sulfur cluster binding	1.74E-03
43	GO:0048487: beta-tubulin binding	1.75E-03
44	GO:0016149: translation release factor activity, codon specific	1.75E-03
45	GO:0016851: magnesium chelatase activity	1.75E-03
46	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.75E-03
47	GO:0043023: ribosomal large subunit binding	1.75E-03
48	GO:0008097: 5S rRNA binding	1.75E-03
49	GO:0001872: (1->3)-beta-D-glucan binding	1.75E-03
50	GO:0003723: RNA binding	1.86E-03
51	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.35E-03
52	GO:0016987: sigma factor activity	2.35E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.35E-03
54	GO:0001053: plastid sigma factor activity	2.35E-03
55	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.35E-03
56	GO:0047134: protein-disulfide reductase activity	2.96E-03
57	GO:0005215: transporter activity	3.14E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	3.71E-03
59	GO:0004130: cytochrome-c peroxidase activity	3.71E-03
60	GO:0016208: AMP binding	3.71E-03
61	GO:0016688: L-ascorbate peroxidase activity	3.71E-03
62	GO:0004791: thioredoxin-disulfide reductase activity	3.71E-03
63	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.71E-03
64	GO:0004124: cysteine synthase activity	4.47E-03
65	GO:0051082: unfolded protein binding	4.80E-03
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.85E-03
67	GO:0008235: metalloexopeptidase activity	5.27E-03
68	GO:0004620: phospholipase activity	5.27E-03
69	GO:0003729: mRNA binding	5.98E-03
70	GO:0008312: 7S RNA binding	6.13E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	6.13E-03
72	GO:0043022: ribosome binding	6.13E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.03E-03
74	GO:0005375: copper ion transmembrane transporter activity	7.03E-03
75	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.03E-03
76	GO:0003747: translation release factor activity	7.97E-03
77	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.97E-03
78	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.05E-03
79	GO:0005381: iron ion transmembrane transporter activity	8.96E-03
80	GO:0003993: acid phosphatase activity	1.07E-02
81	GO:0004177: aminopeptidase activity	1.11E-02
82	GO:0047372: acylglycerol lipase activity	1.11E-02
83	GO:0046872: metal ion binding	1.20E-02
84	GO:0042802: identical protein binding	1.31E-02
85	GO:0004565: beta-galactosidase activity	1.33E-02
86	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.33E-02
87	GO:0009982: pseudouridine synthase activity	1.33E-02
88	GO:0043621: protein self-association	1.43E-02
89	GO:0008146: sulfotransferase activity	1.58E-02
90	GO:0005525: GTP binding	1.62E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	1.72E-02
92	GO:0004857: enzyme inhibitor activity	1.83E-02
93	GO:0004407: histone deacetylase activity	1.83E-02
94	GO:0043424: protein histidine kinase binding	1.96E-02
95	GO:0015079: potassium ion transmembrane transporter activity	1.96E-02
96	GO:0004176: ATP-dependent peptidase activity	2.10E-02
97	GO:0015035: protein disulfide oxidoreductase activity	2.62E-02
98	GO:0003824: catalytic activity	2.70E-02
99	GO:0005355: glucose transmembrane transporter activity	3.15E-02
100	GO:0050662: coenzyme binding	3.15E-02
101	GO:0010181: FMN binding	3.15E-02
102	GO:0016787: hydrolase activity	3.32E-02
103	GO:0030246: carbohydrate binding	3.56E-02
104	GO:0004518: nuclease activity	3.64E-02
105	GO:0000156: phosphorelay response regulator activity	3.81E-02
106	GO:0004519: endonuclease activity	3.97E-02
107	GO:0016413: O-acetyltransferase activity	4.33E-02
108	GO:0016597: amino acid binding	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.82E-78
2	GO:0009570: chloroplast stroma	1.83E-39
3	GO:0009941: chloroplast envelope	1.38E-36
4	GO:0009535: chloroplast thylakoid membrane	1.32E-31
5	GO:0009579: thylakoid	3.98E-23
6	GO:0009543: chloroplast thylakoid lumen	1.23E-17
7	GO:0031977: thylakoid lumen	1.97E-12
8	GO:0005840: ribosome	3.77E-11
9	GO:0009534: chloroplast thylakoid	7.94E-11
10	GO:0031969: chloroplast membrane	4.78E-07
11	GO:0009654: photosystem II oxygen evolving complex	7.68E-06
12	GO:0009523: photosystem II	3.62E-05
13	GO:0019898: extrinsic component of membrane	3.62E-05
14	GO:0042651: thylakoid membrane	1.70E-04
15	GO:0009533: chloroplast stromal thylakoid	2.96E-04
16	GO:0009782: photosystem I antenna complex	3.44E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.44E-04
18	GO:0009515: granal stacked thylakoid	3.44E-04
19	GO:0009547: plastid ribosome	3.44E-04
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.47E-04
21	GO:0080085: signal recognition particle, chloroplast targeting	7.51E-04
22	GO:0030529: intracellular ribonucleoprotein complex	8.08E-04
23	GO:0032040: small-subunit processome	9.90E-04
24	GO:0009528: plastid inner membrane	1.21E-03
25	GO:0010007: magnesium chelatase complex	1.21E-03
26	GO:0009509: chromoplast	1.21E-03
27	GO:0009536: plastid	1.29E-03
28	GO:0030076: light-harvesting complex	1.41E-03
29	GO:0009532: plastid stroma	2.11E-03
30	GO:0009527: plastid outer membrane	2.35E-03
31	GO:0009706: chloroplast inner membrane	4.80E-03
32	GO:0010319: stromule	5.49E-03
33	GO:0010287: plastoglobule	5.97E-03
34	GO:0005623: cell	6.61E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.03E-03
36	GO:0009707: chloroplast outer membrane	8.05E-03
37	GO:0000311: plastid large ribosomal subunit	1.22E-02
38	GO:0046658: anchored component of plasma membrane	1.38E-02
39	GO:0030095: chloroplast photosystem II	1.45E-02
40	GO:0000312: plastid small ribosomal subunit	1.45E-02
41	GO:0043234: protein complex	1.70E-02
42	GO:0015935: small ribosomal subunit	2.10E-02
43	GO:0016020: membrane	2.73E-02
44	GO:0009522: photosystem I	3.15E-02
45	GO:0043231: intracellular membrane-bounded organelle	4.04E-02
46	GO:0009295: nucleoid	4.15E-02
47	GO:0005778: peroxisomal membrane	4.15E-02