co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G44530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0034337: RNA folding	0.00E+00
9	GO:0015979: photosynthesis	1.20E-07
10	GO:0010207: photosystem II assembly	1.07E-06
11	GO:0090391: granum assembly	1.07E-05
12	GO:0010205: photoinhibition	1.41E-05
13	GO:0009773: photosynthetic electron transport in photosystem I	2.38E-05
14	GO:0015995: chlorophyll biosynthetic process	4.94E-05
15	GO:0006636: unsaturated fatty acid biosynthetic process	6.47E-05
16	GO:1901259: chloroplast rRNA processing	1.41E-04
17	GO:0010450: inflorescence meristem growth	2.53E-04
18	GO:0000476: maturation of 4.5S rRNA	2.53E-04
19	GO:0000967: rRNA 5'-end processing	2.53E-04
20	GO:0043953: protein transport by the Tat complex	2.53E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	2.53E-04
22	GO:0043266: regulation of potassium ion transport	2.53E-04
23	GO:0010480: microsporocyte differentiation	2.53E-04
24	GO:0000481: maturation of 5S rRNA	2.53E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	2.53E-04
26	GO:0065002: intracellular protein transmembrane transport	2.53E-04
27	GO:0006106: fumarate metabolic process	2.53E-04
28	GO:2000021: regulation of ion homeostasis	2.53E-04
29	GO:1902458: positive regulation of stomatal opening	2.53E-04
30	GO:0010028: xanthophyll cycle	2.53E-04
31	GO:0032544: plastid translation	2.90E-04
32	GO:0010206: photosystem II repair	3.51E-04
33	GO:0010027: thylakoid membrane organization	4.57E-04
34	GO:0034470: ncRNA processing	5.59E-04
35	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.59E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.59E-04
37	GO:0035304: regulation of protein dephosphorylation	5.59E-04
38	GO:0080005: photosystem stoichiometry adjustment	5.59E-04
39	GO:1900871: chloroplast mRNA modification	5.59E-04
40	GO:0018026: peptidyl-lysine monomethylation	5.59E-04
41	GO:0080009: mRNA methylation	5.59E-04
42	GO:0016122: xanthophyll metabolic process	5.59E-04
43	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.59E-04
44	GO:1902448: positive regulation of shade avoidance	9.07E-04
45	GO:0006518: peptide metabolic process	9.07E-04
46	GO:0045165: cell fate commitment	9.07E-04
47	GO:0010239: chloroplast mRNA processing	1.29E-03
48	GO:0080170: hydrogen peroxide transmembrane transport	1.29E-03
49	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.29E-03
50	GO:0010371: regulation of gibberellin biosynthetic process	1.29E-03
51	GO:0071369: cellular response to ethylene stimulus	1.61E-03
52	GO:0009765: photosynthesis, light harvesting	1.73E-03
53	GO:0006109: regulation of carbohydrate metabolic process	1.73E-03
54	GO:0045727: positive regulation of translation	1.73E-03
55	GO:0015994: chlorophyll metabolic process	1.73E-03
56	GO:0030104: water homeostasis	1.73E-03
57	GO:0010109: regulation of photosynthesis	1.73E-03
58	GO:0009306: protein secretion	1.75E-03
59	GO:0010438: cellular response to sulfur starvation	2.21E-03
60	GO:0010158: abaxial cell fate specification	2.21E-03
61	GO:0016120: carotene biosynthetic process	2.21E-03
62	GO:0010305: leaf vascular tissue pattern formation	2.21E-03
63	GO:0045038: protein import into chloroplast thylakoid membrane	2.21E-03
64	GO:1902183: regulation of shoot apical meristem development	2.21E-03
65	GO:0005975: carbohydrate metabolic process	2.30E-03
66	GO:0009735: response to cytokinin	2.62E-03
67	GO:0042549: photosystem II stabilization	2.72E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.72E-03
69	GO:0000470: maturation of LSU-rRNA	2.72E-03
70	GO:0016554: cytidine to uridine editing	2.72E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	2.72E-03
72	GO:0009759: indole glucosinolate biosynthetic process	2.72E-03
73	GO:0017148: negative regulation of translation	3.27E-03
74	GO:0048437: floral organ development	3.86E-03
75	GO:0010196: nonphotochemical quenching	3.86E-03
76	GO:1900057: positive regulation of leaf senescence	3.86E-03
77	GO:0010444: guard mother cell differentiation	3.86E-03
78	GO:0005978: glycogen biosynthetic process	4.48E-03
79	GO:0009642: response to light intensity	4.48E-03
80	GO:0030091: protein repair	4.48E-03
81	GO:0006353: DNA-templated transcription, termination	4.48E-03
82	GO:0006605: protein targeting	4.48E-03
83	GO:0032508: DNA duplex unwinding	4.48E-03
84	GO:2000070: regulation of response to water deprivation	4.48E-03
85	GO:0010492: maintenance of shoot apical meristem identity	4.48E-03
86	GO:0018298: protein-chromophore linkage	5.11E-03
87	GO:0010093: specification of floral organ identity	5.13E-03
88	GO:0009409: response to cold	5.75E-03
89	GO:0048507: meristem development	5.81E-03
90	GO:2000024: regulation of leaf development	5.81E-03
91	GO:0009631: cold acclimation	5.91E-03
92	GO:0009638: phototropism	6.52E-03
93	GO:1900865: chloroplast RNA modification	6.52E-03
94	GO:0034599: cellular response to oxidative stress	6.77E-03
95	GO:0055062: phosphate ion homeostasis	7.26E-03
96	GO:0046856: phosphatidylinositol dephosphorylation	8.04E-03
97	GO:0019684: photosynthesis, light reaction	8.04E-03
98	GO:0008285: negative regulation of cell proliferation	8.04E-03
99	GO:0043085: positive regulation of catalytic activity	8.04E-03
100	GO:1903507: negative regulation of nucleic acid-templated transcription	8.04E-03
101	GO:0048229: gametophyte development	8.04E-03
102	GO:0002213: defense response to insect	8.83E-03
103	GO:0016024: CDP-diacylglycerol biosynthetic process	8.83E-03
104	GO:0010588: cotyledon vascular tissue pattern formation	9.66E-03
105	GO:0009785: blue light signaling pathway	9.66E-03
106	GO:0010628: positive regulation of gene expression	9.66E-03
107	GO:0006108: malate metabolic process	9.66E-03
108	GO:0009718: anthocyanin-containing compound biosynthetic process	9.66E-03
109	GO:0010075: regulation of meristem growth	9.66E-03
110	GO:0009934: regulation of meristem structural organization	1.05E-02
111	GO:0009933: meristem structural organization	1.05E-02
112	GO:0006364: rRNA processing	1.13E-02
113	GO:0071732: cellular response to nitric oxide	1.14E-02
114	GO:0010030: positive regulation of seed germination	1.14E-02
115	GO:0009416: response to light stimulus	1.16E-02
116	GO:0000162: tryptophan biosynthetic process	1.23E-02
117	GO:0010025: wax biosynthetic process	1.23E-02
118	GO:0009833: plant-type primary cell wall biogenesis	1.23E-02
119	GO:0009944: polarity specification of adaxial/abaxial axis	1.32E-02
120	GO:2000377: regulation of reactive oxygen species metabolic process	1.32E-02
121	GO:0008299: isoprenoid biosynthetic process	1.42E-02
122	GO:0010073: meristem maintenance	1.42E-02
123	GO:0031408: oxylipin biosynthetic process	1.52E-02
124	GO:0055114: oxidation-reduction process	1.61E-02
125	GO:0035428: hexose transmembrane transport	1.62E-02
126	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.62E-02
127	GO:0055085: transmembrane transport	1.66E-02
128	GO:0010227: floral organ abscission	1.72E-02
129	GO:0042127: regulation of cell proliferation	1.83E-02
130	GO:0016117: carotenoid biosynthetic process	1.94E-02
131	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.94E-02
132	GO:0048653: anther development	2.05E-02
133	GO:0042631: cellular response to water deprivation	2.05E-02
134	GO:0042335: cuticle development	2.05E-02
135	GO:0080022: primary root development	2.05E-02
136	GO:0034220: ion transmembrane transport	2.05E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	2.05E-02
138	GO:0010087: phloem or xylem histogenesis	2.05E-02
139	GO:0071472: cellular response to salt stress	2.16E-02
140	GO:0010154: fruit development	2.16E-02
141	GO:0006662: glycerol ether metabolic process	2.16E-02
142	GO:0046323: glucose import	2.16E-02
143	GO:0042744: hydrogen peroxide catabolic process	2.30E-02
144	GO:0019252: starch biosynthetic process	2.39E-02
145	GO:0000302: response to reactive oxygen species	2.51E-02
146	GO:0006633: fatty acid biosynthetic process	2.54E-02
147	GO:0016032: viral process	2.63E-02
148	GO:0030163: protein catabolic process	2.75E-02
149	GO:0071281: cellular response to iron ion	2.75E-02
150	GO:1901657: glycosyl compound metabolic process	2.75E-02
151	GO:0007623: circadian rhythm	2.79E-02
152	GO:0009567: double fertilization forming a zygote and endosperm	2.87E-02
153	GO:0006412: translation	3.16E-02
154	GO:0007166: cell surface receptor signaling pathway	3.19E-02
155	GO:0042128: nitrate assimilation	3.52E-02
156	GO:0009737: response to abscisic acid	3.78E-02
157	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
158	GO:0030244: cellulose biosynthetic process	3.93E-02
159	GO:0000160: phosphorelay signal transduction system	4.08E-02
160	GO:0009658: chloroplast organization	4.30E-02
161	GO:0042254: ribosome biogenesis	4.38E-02
162	GO:0016051: carbohydrate biosynthetic process	4.66E-02
163	GO:0006099: tricarboxylic acid cycle	4.80E-02
164	GO:0045893: positive regulation of transcription, DNA-templated	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0005528: FK506 binding	4.09E-08
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.13E-07
9	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.96E-06
10	GO:0016851: magnesium chelatase activity	2.42E-05
11	GO:0043023: ribosomal large subunit binding	2.42E-05
12	GO:0019843: rRNA binding	8.41E-05
13	GO:0050139: nicotinate-N-glucosyltransferase activity	2.53E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.53E-04
15	GO:0010242: oxygen evolving activity	2.53E-04
16	GO:0004856: xylulokinase activity	2.53E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	2.53E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.53E-04
19	GO:0004333: fumarate hydratase activity	2.53E-04
20	GO:0004312: fatty acid synthase activity	5.59E-04
21	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.59E-04
22	GO:0016868: intramolecular transferase activity, phosphotransferases	5.59E-04
23	GO:0008266: poly(U) RNA binding	8.19E-04
24	GO:0004751: ribose-5-phosphate isomerase activity	9.07E-04
25	GO:0070402: NADPH binding	9.07E-04
26	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.07E-04
27	GO:0001872: (1->3)-beta-D-glucan binding	1.29E-03
28	GO:0019201: nucleotide kinase activity	1.29E-03
29	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.43E-03
30	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-03
31	GO:0004045: aminoacyl-tRNA hydrolase activity	1.73E-03
32	GO:0009011: starch synthase activity	1.73E-03
33	GO:0043495: protein anchor	1.73E-03
34	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.73E-03
35	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.73E-03
36	GO:0016279: protein-lysine N-methyltransferase activity	1.73E-03
37	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.21E-03
38	GO:0004130: cytochrome-c peroxidase activity	2.72E-03
39	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.72E-03
40	GO:0042578: phosphoric ester hydrolase activity	2.72E-03
41	GO:0005515: protein binding	2.83E-03
42	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.27E-03
43	GO:0004017: adenylate kinase activity	3.27E-03
44	GO:0019899: enzyme binding	3.86E-03
45	GO:0016168: chlorophyll binding	4.15E-03
46	GO:0043022: ribosome binding	4.48E-03
47	GO:0016787: hydrolase activity	4.86E-03
48	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.13E-03
49	GO:0016491: oxidoreductase activity	5.44E-03
50	GO:0003723: RNA binding	6.12E-03
51	GO:0008047: enzyme activator activity	7.26E-03
52	GO:0015020: glucuronosyltransferase activity	7.26E-03
53	GO:0042802: identical protein binding	7.32E-03
54	GO:0047372: acylglycerol lipase activity	8.04E-03
55	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	8.83E-03
56	GO:0009982: pseudouridine synthase activity	9.66E-03
57	GO:0004565: beta-galactosidase activity	9.66E-03
58	GO:0031072: heat shock protein binding	9.66E-03
59	GO:0004857: enzyme inhibitor activity	1.32E-02
60	GO:0003714: transcription corepressor activity	1.32E-02
61	GO:0043424: protein histidine kinase binding	1.42E-02
62	GO:0033612: receptor serine/threonine kinase binding	1.52E-02
63	GO:0004871: signal transducer activity	1.65E-02
64	GO:0016760: cellulose synthase (UDP-forming) activity	1.72E-02
65	GO:0003756: protein disulfide isomerase activity	1.83E-02
66	GO:0047134: protein-disulfide reductase activity	1.94E-02
67	GO:0003729: mRNA binding	2.08E-02
68	GO:0009055: electron carrier activity	2.22E-02
69	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-02
70	GO:0016853: isomerase activity	2.27E-02
71	GO:0005355: glucose transmembrane transporter activity	2.27E-02
72	GO:0010181: FMN binding	2.27E-02
73	GO:0050662: coenzyme binding	2.27E-02
74	GO:0019901: protein kinase binding	2.39E-02
75	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.60E-02
76	GO:0000156: phosphorelay response regulator activity	2.75E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
78	GO:0016759: cellulose synthase activity	2.87E-02
79	GO:0005509: calcium ion binding	2.95E-02
80	GO:0015250: water channel activity	3.26E-02
81	GO:0003735: structural constituent of ribosome	3.38E-02
82	GO:0008375: acetylglucosaminyltransferase activity	3.52E-02
83	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
84	GO:0030247: polysaccharide binding	3.66E-02
85	GO:0008236: serine-type peptidase activity	3.80E-02
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.93E-02
87	GO:0005096: GTPase activator activity	4.08E-02
88	GO:0004222: metalloendopeptidase activity	4.22E-02
89	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.22E-02
90	GO:0004601: peroxidase activity	4.30E-02
91	GO:0030145: manganese ion binding	4.36E-02
92	GO:0016788: hydrolase activity, acting on ester bonds	4.38E-02
93	GO:0003746: translation elongation factor activity	4.66E-02
94	GO:0003993: acid phosphatase activity	4.80E-02
95	GO:0008422: beta-glucosidase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	6.00E-51
3	GO:0009535: chloroplast thylakoid membrane	4.87E-26
4	GO:0009534: chloroplast thylakoid	1.64E-25
5	GO:0009570: chloroplast stroma	1.07E-22
6	GO:0009543: chloroplast thylakoid lumen	8.27E-21
7	GO:0009579: thylakoid	1.38E-18
8	GO:0031977: thylakoid lumen	6.39E-17
9	GO:0009941: chloroplast envelope	3.95E-16
10	GO:0010007: magnesium chelatase complex	1.07E-05
11	GO:0033281: TAT protein transport complex	1.07E-05
12	GO:0009654: photosystem II oxygen evolving complex	8.85E-05
13	GO:0009533: chloroplast stromal thylakoid	1.85E-04
14	GO:0045239: tricarboxylic acid cycle enzyme complex	2.53E-04
15	GO:0031361: integral component of thylakoid membrane	2.53E-04
16	GO:0043674: columella	2.53E-04
17	GO:0009515: granal stacked thylakoid	2.53E-04
18	GO:0019898: extrinsic component of membrane	2.56E-04
19	GO:0030093: chloroplast photosystem I	5.59E-04
20	GO:0031969: chloroplast membrane	5.67E-04
21	GO:0010287: plastoglobule	5.67E-04
22	GO:0032040: small-subunit processome	6.42E-04
23	GO:0030095: chloroplast photosystem II	8.19E-04
24	GO:0009509: chromoplast	9.07E-04
25	GO:0005840: ribosome	1.02E-03
26	GO:0009531: secondary cell wall	1.29E-03
27	GO:0009523: photosystem II	2.54E-03
28	GO:0009295: nucleoid	3.49E-03
29	GO:0042807: central vacuole	3.86E-03
30	GO:0008180: COP9 signalosome	5.81E-03
31	GO:0055028: cortical microtubule	7.26E-03
32	GO:0016602: CCAAT-binding factor complex	9.66E-03
33	GO:0009508: plastid chromosome	9.66E-03
34	GO:0042651: thylakoid membrane	1.42E-02
35	GO:0009522: photosystem I	2.27E-02
36	GO:0009705: plant-type vacuole membrane	2.79E-02
37	GO:0030529: intracellular ribonucleoprotein complex	3.26E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.93E-02
39	GO:0009536: plastid	4.45E-02