co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0016048: detection of temperature stimulus	0.00E+00
4	GO:0031508: pericentric heterochromatin assembly	0.00E+00
5	GO:0010480: microsporocyte differentiation	4.60E-05
6	GO:0048438: floral whorl development	4.60E-05
7	GO:0000066: mitochondrial ornithine transport	4.60E-05
8	GO:0019354: siroheme biosynthetic process	4.60E-05
9	GO:0048229: gametophyte development	4.81E-05
10	GO:0080167: response to karrikin	6.32E-05
11	GO:0006006: glucose metabolic process	6.58E-05
12	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.13E-04
13	GO:0019388: galactose catabolic process	1.13E-04
14	GO:0007154: cell communication	1.13E-04
15	GO:0010220: positive regulation of vernalization response	1.13E-04
16	GO:0010424: DNA methylation on cytosine within a CG sequence	1.13E-04
17	GO:0032776: DNA methylation on cytosine	1.95E-04
18	GO:0009590: detection of gravity	2.85E-04
19	GO:0009765: photosynthesis, light harvesting	3.84E-04
20	GO:0010218: response to far red light	5.92E-04
21	GO:0000060: protein import into nucleus, translocation	5.98E-04
22	GO:1900425: negative regulation of defense response to bacterium	5.98E-04
23	GO:0009117: nucleotide metabolic process	5.98E-04
24	GO:0010076: maintenance of floral meristem identity	7.13E-04
25	GO:0010077: maintenance of inflorescence meristem identity	7.13E-04
26	GO:0051510: regulation of unidimensional cell growth	8.33E-04
27	GO:0048437: floral organ development	8.33E-04
28	GO:0010114: response to red light	8.61E-04
29	GO:0052543: callose deposition in cell wall	9.57E-04
30	GO:0005978: glycogen biosynthetic process	9.57E-04
31	GO:0071555: cell wall organization	9.77E-04
32	GO:0044030: regulation of DNA methylation	1.09E-03
33	GO:0022900: electron transport chain	1.09E-03
34	GO:0048193: Golgi vesicle transport	1.09E-03
35	GO:0009821: alkaloid biosynthetic process	1.22E-03
36	GO:0009638: phototropism	1.36E-03
37	GO:0006779: porphyrin-containing compound biosynthetic process	1.36E-03
38	GO:0006325: chromatin organization	1.51E-03
39	GO:0018119: peptidyl-cysteine S-nitrosylation	1.66E-03
40	GO:0010216: maintenance of DNA methylation	1.66E-03
41	GO:0000038: very long-chain fatty acid metabolic process	1.66E-03
42	GO:0009698: phenylpropanoid metabolic process	1.66E-03
43	GO:0010582: floral meristem determinacy	1.81E-03
44	GO:0016024: CDP-diacylglycerol biosynthetic process	1.81E-03
45	GO:0005975: carbohydrate metabolic process	1.82E-03
46	GO:0010075: regulation of meristem growth	1.98E-03
47	GO:0019253: reductive pentose-phosphate cycle	2.14E-03
48	GO:0009934: regulation of meristem structural organization	2.14E-03
49	GO:0010143: cutin biosynthetic process	2.14E-03
50	GO:0009768: photosynthesis, light harvesting in photosystem I	2.85E-03
51	GO:0006334: nucleosome assembly	3.04E-03
52	GO:0010017: red or far-red light signaling pathway	3.23E-03
53	GO:0009411: response to UV	3.43E-03
54	GO:0019722: calcium-mediated signaling	3.63E-03
55	GO:0010584: pollen exine formation	3.63E-03
56	GO:0042335: cuticle development	4.04E-03
57	GO:0000271: polysaccharide biosynthetic process	4.04E-03
58	GO:0048653: anther development	4.04E-03
59	GO:0009958: positive gravitropism	4.25E-03
60	GO:0006342: chromatin silencing	4.25E-03
61	GO:0009741: response to brassinosteroid	4.25E-03
62	GO:0045489: pectin biosynthetic process	4.25E-03
63	GO:0019252: starch biosynthetic process	4.68E-03
64	GO:0009791: post-embryonic development	4.68E-03
65	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.91E-03
66	GO:0071554: cell wall organization or biogenesis	4.91E-03
67	GO:1901657: glycosyl compound metabolic process	5.37E-03
68	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.39E-03
69	GO:0006904: vesicle docking involved in exocytosis	5.84E-03
70	GO:0007267: cell-cell signaling	5.84E-03
71	GO:0010411: xyloglucan metabolic process	7.08E-03
72	GO:0016311: dephosphorylation	7.34E-03
73	GO:0018298: protein-chromophore linkage	7.60E-03
74	GO:0009813: flavonoid biosynthetic process	7.87E-03
75	GO:0008152: metabolic process	8.47E-03
76	GO:0016051: carbohydrate biosynthetic process	8.96E-03
77	GO:0009637: response to blue light	8.96E-03
78	GO:0006839: mitochondrial transport	9.82E-03
79	GO:0006887: exocytosis	1.01E-02
80	GO:0009744: response to sucrose	1.07E-02
81	GO:0042546: cell wall biogenesis	1.10E-02
82	GO:0000165: MAPK cascade	1.23E-02
83	GO:0009585: red, far-red light phototransduction	1.32E-02
84	GO:0009416: response to light stimulus	1.37E-02
85	GO:0006096: glycolytic process	1.49E-02
86	GO:0016569: covalent chromatin modification	1.63E-02
87	GO:0009742: brassinosteroid mediated signaling pathway	1.77E-02
88	GO:0009058: biosynthetic process	2.07E-02
89	GO:0016567: protein ubiquitination	2.18E-02
90	GO:0006633: fatty acid biosynthetic process	2.34E-02
91	GO:0009739: response to gibberellin	2.71E-02
92	GO:0010468: regulation of gene expression	2.84E-02
93	GO:0030154: cell differentiation	3.02E-02
94	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.23E-02
95	GO:0009826: unidimensional cell growth	3.32E-02
96	GO:0006970: response to osmotic stress	3.60E-02
97	GO:0009409: response to cold	3.75E-02
98	GO:0046777: protein autophosphorylation	4.18E-02
99	GO:0015979: photosynthesis	4.37E-02
100	GO:0045892: negative regulation of transcription, DNA-templated	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0004851: uroporphyrin-III C-methyltransferase activity	0.00E+00
2	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.13E-04
3	GO:0004614: phosphoglucomutase activity	1.13E-04
4	GO:0016868: intramolecular transferase activity, phosphotransferases	1.13E-04
5	GO:0000064: L-ornithine transmembrane transporter activity	1.13E-04
6	GO:0010429: methyl-CpNpN binding	1.95E-04
7	GO:0010428: methyl-CpNpG binding	1.95E-04
8	GO:0035529: NADH pyrophosphatase activity	2.85E-04
9	GO:0001872: (1->3)-beta-D-glucan binding	2.85E-04
10	GO:0045430: chalcone isomerase activity	3.84E-04
11	GO:0010385: double-stranded methylated DNA binding	3.84E-04
12	GO:0030247: polysaccharide binding	4.87E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.98E-04
14	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.98E-04
15	GO:0042393: histone binding	7.66E-04
16	GO:0016207: 4-coumarate-CoA ligase activity	1.22E-03
17	GO:0016844: strictosidine synthase activity	1.36E-03
18	GO:0008327: methyl-CpG binding	1.66E-03
19	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.14E-03
20	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.49E-03
21	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.49E-03
22	GO:0031409: pigment binding	2.49E-03
23	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.49E-03
24	GO:0008134: transcription factor binding	2.67E-03
25	GO:0033612: receptor serine/threonine kinase binding	3.04E-03
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.09E-03
27	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.23E-03
28	GO:0046982: protein heterodimerization activity	4.13E-03
29	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.91E-03
30	GO:0016791: phosphatase activity	5.60E-03
31	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.84E-03
32	GO:0016413: O-acetyltransferase activity	6.08E-03
33	GO:0016168: chlorophyll binding	6.57E-03
34	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.08E-03
35	GO:0102483: scopolin beta-glucosidase activity	7.08E-03
36	GO:0008422: beta-glucosidase activity	9.53E-03
37	GO:0051537: 2 iron, 2 sulfur cluster binding	1.13E-02
38	GO:0043621: protein self-association	1.13E-02
39	GO:0004650: polygalacturonase activity	1.59E-02
40	GO:0016874: ligase activity	1.63E-02
41	GO:0016746: transferase activity, transferring acyl groups	1.73E-02
42	GO:0016758: transferase activity, transferring hexosyl groups	1.95E-02
43	GO:0016829: lyase activity	2.10E-02
44	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.18E-02
45	GO:0008168: methyltransferase activity	3.32E-02
46	GO:0000287: magnesium ion binding	3.37E-02
47	GO:0016788: hydrolase activity, acting on ester bonds	3.46E-02
48	GO:0003682: chromatin binding	3.55E-02
49	GO:0004842: ubiquitin-protein transferase activity	3.83E-02
50	GO:0004674: protein serine/threonine kinase activity	3.97E-02
51	GO:0004672: protein kinase activity	4.06E-02
52	GO:0061630: ubiquitin protein ligase activity	4.13E-02
53	GO:0042803: protein homodimerization activity	4.68E-02
54	GO:0004871: signal transducer activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0000788: nuclear nucleosome	0.00E+00
2	GO:0009505: plant-type cell wall	3.03E-05
3	GO:0046658: anchored component of plasma membrane	3.12E-05
4	GO:0031225: anchored component of membrane	9.20E-05
5	GO:0010319: stromule	3.70E-04
6	GO:0000786: nucleosome	6.47E-04
7	GO:0010369: chromocenter	7.13E-04
8	GO:0005720: nuclear heterochromatin	1.22E-03
9	GO:0009506: plasmodesma	1.43E-03
10	GO:0030076: light-harvesting complex	2.31E-03
11	GO:0000790: nuclear chromatin	3.83E-03
12	GO:0009522: photosystem I	4.47E-03
13	GO:0009523: photosystem II	4.68E-03
14	GO:0000145: exocyst	5.13E-03
15	GO:0048046: apoplast	6.86E-03
16	GO:0005576: extracellular region	1.09E-02
17	GO:0005886: plasma membrane	1.51E-02
18	GO:0009579: thylakoid	1.64E-02
19	GO:0010287: plastoglobule	1.92E-02
20	GO:0005618: cell wall	3.04E-02
21	GO:0031969: chloroplast membrane	3.98E-02
22	GO:0016021: integral component of membrane	4.12E-02
23	GO:0005743: mitochondrial inner membrane	4.98E-02