GO Enrichment Analysis of Co-expressed Genes with
AT5G40950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 3 | GO:0042493: response to drug | 0.00E+00 |
| 4 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0006412: translation | 1.14E-15 |
| 9 | GO:0042254: ribosome biogenesis | 6.65E-11 |
| 10 | GO:0032544: plastid translation | 9.70E-11 |
| 11 | GO:0090391: granum assembly | 6.02E-09 |
| 12 | GO:0015979: photosynthesis | 7.36E-09 |
| 13 | GO:0009735: response to cytokinin | 1.89E-07 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 1.42E-05 |
| 15 | GO:0010207: photosystem II assembly | 1.65E-05 |
| 16 | GO:0010236: plastoquinone biosynthetic process | 3.35E-05 |
| 17 | GO:0006633: fatty acid biosynthetic process | 3.44E-05 |
| 18 | GO:0009411: response to UV | 5.23E-05 |
| 19 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.23E-05 |
| 20 | GO:0017148: negative regulation of translation | 6.99E-05 |
| 21 | GO:0009772: photosynthetic electron transport in photosystem II | 9.33E-05 |
| 22 | GO:0010196: nonphotochemical quenching | 9.33E-05 |
| 23 | GO:0009828: plant-type cell wall loosening | 1.55E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.62E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 1.62E-04 |
| 26 | GO:0042759: long-chain fatty acid biosynthetic process | 1.62E-04 |
| 27 | GO:0042371: vitamin K biosynthetic process | 1.62E-04 |
| 28 | GO:0010027: thylakoid membrane organization | 1.99E-04 |
| 29 | GO:0006949: syncytium formation | 2.60E-04 |
| 30 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.69E-04 |
| 31 | GO:0006568: tryptophan metabolic process | 3.69E-04 |
| 32 | GO:0010024: phytochromobilin biosynthetic process | 3.69E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.69E-04 |
| 34 | GO:0010025: wax biosynthetic process | 5.56E-04 |
| 35 | GO:0071492: cellular response to UV-A | 6.04E-04 |
| 36 | GO:0006788: heme oxidation | 6.04E-04 |
| 37 | GO:0009664: plant-type cell wall organization | 7.21E-04 |
| 38 | GO:0009650: UV protection | 8.63E-04 |
| 39 | GO:0006986: response to unfolded protein | 8.63E-04 |
| 40 | GO:0055070: copper ion homeostasis | 8.63E-04 |
| 41 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.63E-04 |
| 42 | GO:0071484: cellular response to light intensity | 8.63E-04 |
| 43 | GO:0009102: biotin biosynthetic process | 8.63E-04 |
| 44 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.63E-04 |
| 45 | GO:0051639: actin filament network formation | 8.63E-04 |
| 46 | GO:0006241: CTP biosynthetic process | 8.63E-04 |
| 47 | GO:0006165: nucleoside diphosphate phosphorylation | 8.63E-04 |
| 48 | GO:0006228: UTP biosynthetic process | 8.63E-04 |
| 49 | GO:0042742: defense response to bacterium | 9.00E-04 |
| 50 | GO:0000413: protein peptidyl-prolyl isomerization | 1.11E-03 |
| 51 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.14E-03 |
| 52 | GO:0071486: cellular response to high light intensity | 1.14E-03 |
| 53 | GO:0051764: actin crosslink formation | 1.14E-03 |
| 54 | GO:0006183: GTP biosynthetic process | 1.14E-03 |
| 55 | GO:0022622: root system development | 1.14E-03 |
| 56 | GO:0044206: UMP salvage | 1.14E-03 |
| 57 | GO:0045454: cell redox homeostasis | 1.35E-03 |
| 58 | GO:0043097: pyrimidine nucleoside salvage | 1.45E-03 |
| 59 | GO:0006665: sphingolipid metabolic process | 1.45E-03 |
| 60 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.45E-03 |
| 61 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.78E-03 |
| 62 | GO:0042549: photosystem II stabilization | 1.78E-03 |
| 63 | GO:0006206: pyrimidine nucleobase metabolic process | 1.78E-03 |
| 64 | GO:0042372: phylloquinone biosynthetic process | 2.14E-03 |
| 65 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.14E-03 |
| 66 | GO:0010189: vitamin E biosynthetic process | 2.14E-03 |
| 67 | GO:0032880: regulation of protein localization | 2.52E-03 |
| 68 | GO:0009817: defense response to fungus, incompatible interaction | 2.74E-03 |
| 69 | GO:0048564: photosystem I assembly | 2.91E-03 |
| 70 | GO:0008610: lipid biosynthetic process | 2.91E-03 |
| 71 | GO:0006526: arginine biosynthetic process | 3.33E-03 |
| 72 | GO:0009657: plastid organization | 3.33E-03 |
| 73 | GO:0010206: photosystem II repair | 3.77E-03 |
| 74 | GO:0015780: nucleotide-sugar transport | 3.77E-03 |
| 75 | GO:0009826: unidimensional cell growth | 4.01E-03 |
| 76 | GO:0006631: fatty acid metabolic process | 4.10E-03 |
| 77 | GO:0009658: chloroplast organization | 4.21E-03 |
| 78 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.22E-03 |
| 79 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.22E-03 |
| 80 | GO:0006535: cysteine biosynthetic process from serine | 4.69E-03 |
| 81 | GO:0045036: protein targeting to chloroplast | 4.69E-03 |
| 82 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.69E-03 |
| 83 | GO:0043085: positive regulation of catalytic activity | 5.19E-03 |
| 84 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.19E-03 |
| 85 | GO:0009773: photosynthetic electron transport in photosystem I | 5.19E-03 |
| 86 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.69E-03 |
| 87 | GO:0006006: glucose metabolic process | 6.22E-03 |
| 88 | GO:2000012: regulation of auxin polar transport | 6.22E-03 |
| 89 | GO:0006457: protein folding | 6.57E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 6.76E-03 |
| 91 | GO:0010143: cutin biosynthetic process | 6.76E-03 |
| 92 | GO:0006096: glycolytic process | 7.08E-03 |
| 93 | GO:0046688: response to copper ion | 7.32E-03 |
| 94 | GO:0051017: actin filament bundle assembly | 8.48E-03 |
| 95 | GO:0019344: cysteine biosynthetic process | 8.48E-03 |
| 96 | GO:0009116: nucleoside metabolic process | 8.48E-03 |
| 97 | GO:0000027: ribosomal large subunit assembly | 8.48E-03 |
| 98 | GO:0030245: cellulose catabolic process | 1.04E-02 |
| 99 | GO:0010091: trichome branching | 1.17E-02 |
| 100 | GO:0008284: positive regulation of cell proliferation | 1.24E-02 |
| 101 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.24E-02 |
| 102 | GO:0009790: embryo development | 1.25E-02 |
| 103 | GO:0080022: primary root development | 1.31E-02 |
| 104 | GO:0042335: cuticle development | 1.31E-02 |
| 105 | GO:0009958: positive gravitropism | 1.38E-02 |
| 106 | GO:0006520: cellular amino acid metabolic process | 1.38E-02 |
| 107 | GO:0006662: glycerol ether metabolic process | 1.38E-02 |
| 108 | GO:0015986: ATP synthesis coupled proton transport | 1.45E-02 |
| 109 | GO:0045490: pectin catabolic process | 1.48E-02 |
| 110 | GO:0032502: developmental process | 1.67E-02 |
| 111 | GO:0009567: double fertilization forming a zygote and endosperm | 1.83E-02 |
| 112 | GO:0009409: response to cold | 2.03E-02 |
| 113 | GO:0016126: sterol biosynthetic process | 2.07E-02 |
| 114 | GO:0016311: dephosphorylation | 2.42E-02 |
| 115 | GO:0018298: protein-chromophore linkage | 2.51E-02 |
| 116 | GO:0009813: flavonoid biosynthetic process | 2.60E-02 |
| 117 | GO:0048527: lateral root development | 2.78E-02 |
| 118 | GO:0007568: aging | 2.78E-02 |
| 119 | GO:0080167: response to karrikin | 2.84E-02 |
| 120 | GO:0034599: cellular response to oxidative stress | 3.06E-02 |
| 121 | GO:0030001: metal ion transport | 3.26E-02 |
| 122 | GO:0042542: response to hydrogen peroxide | 3.45E-02 |
| 123 | GO:0010114: response to red light | 3.55E-02 |
| 124 | GO:0009644: response to high light intensity | 3.76E-02 |
| 125 | GO:0008643: carbohydrate transport | 3.76E-02 |
| 126 | GO:0032259: methylation | 4.01E-02 |
| 127 | GO:0042538: hyperosmotic salinity response | 4.18E-02 |
| 128 | GO:0009585: red, far-red light phototransduction | 4.39E-02 |
| 129 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 3 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 6 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 7 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 8 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 9 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 10 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 1.19E-17 |
| 12 | GO:0003735: structural constituent of ribosome | 1.56E-17 |
| 13 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.29E-06 |
| 14 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.78E-06 |
| 15 | GO:0016851: magnesium chelatase activity | 1.11E-05 |
| 16 | GO:0043023: ribosomal large subunit binding | 1.11E-05 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.28E-05 |
| 18 | GO:0051920: peroxiredoxin activity | 6.99E-05 |
| 19 | GO:0016209: antioxidant activity | 1.20E-04 |
| 20 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.62E-04 |
| 21 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.62E-04 |
| 22 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.62E-04 |
| 23 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.62E-04 |
| 24 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.62E-04 |
| 25 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.62E-04 |
| 26 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.62E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.69E-04 |
| 28 | GO:0005507: copper ion binding | 4.45E-04 |
| 29 | GO:0005504: fatty acid binding | 6.04E-04 |
| 30 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 6.04E-04 |
| 31 | GO:0005528: FK506 binding | 6.16E-04 |
| 32 | GO:0051087: chaperone binding | 6.78E-04 |
| 33 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 8.63E-04 |
| 34 | GO:0004550: nucleoside diphosphate kinase activity | 8.63E-04 |
| 35 | GO:0008097: 5S rRNA binding | 8.63E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 8.63E-04 |
| 37 | GO:0022891: substrate-specific transmembrane transporter activity | 8.83E-04 |
| 38 | GO:0045430: chalcone isomerase activity | 1.14E-03 |
| 39 | GO:0004392: heme oxygenase (decyclizing) activity | 1.14E-03 |
| 40 | GO:0004659: prenyltransferase activity | 1.14E-03 |
| 41 | GO:0004845: uracil phosphoribosyltransferase activity | 1.14E-03 |
| 42 | GO:0016836: hydro-lyase activity | 1.14E-03 |
| 43 | GO:0043495: protein anchor | 1.14E-03 |
| 44 | GO:0009922: fatty acid elongase activity | 1.45E-03 |
| 45 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.78E-03 |
| 46 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.78E-03 |
| 47 | GO:0004849: uridine kinase activity | 2.14E-03 |
| 48 | GO:0004124: cysteine synthase activity | 2.14E-03 |
| 49 | GO:0102391: decanoate--CoA ligase activity | 2.14E-03 |
| 50 | GO:0016168: chlorophyll binding | 2.22E-03 |
| 51 | GO:0019899: enzyme binding | 2.52E-03 |
| 52 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.52E-03 |
| 53 | GO:0042802: identical protein binding | 3.28E-03 |
| 54 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.77E-03 |
| 55 | GO:0008047: enzyme activator activity | 4.69E-03 |
| 56 | GO:0051287: NAD binding | 5.38E-03 |
| 57 | GO:0008266: poly(U) RNA binding | 6.76E-03 |
| 58 | GO:0008083: growth factor activity | 6.76E-03 |
| 59 | GO:0042803: protein homodimerization activity | 7.38E-03 |
| 60 | GO:0030570: pectate lyase activity | 1.10E-02 |
| 61 | GO:0008810: cellulase activity | 1.10E-02 |
| 62 | GO:0005509: calcium ion binding | 1.14E-02 |
| 63 | GO:0008514: organic anion transmembrane transporter activity | 1.17E-02 |
| 64 | GO:0030170: pyridoxal phosphate binding | 1.19E-02 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.24E-02 |
| 66 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.38E-02 |
| 67 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 68 | GO:0004791: thioredoxin-disulfide reductase activity | 1.45E-02 |
| 69 | GO:0016887: ATPase activity | 1.58E-02 |
| 70 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.75E-02 |
| 71 | GO:0051015: actin filament binding | 1.75E-02 |
| 72 | GO:0016791: phosphatase activity | 1.83E-02 |
| 73 | GO:0008483: transaminase activity | 1.91E-02 |
| 74 | GO:0008168: methyltransferase activity | 2.21E-02 |
| 75 | GO:0004601: peroxidase activity | 2.29E-02 |
| 76 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.42E-02 |
| 77 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.51E-02 |
| 78 | GO:0003746: translation elongation factor activity | 2.97E-02 |
| 79 | GO:0003993: acid phosphatase activity | 3.06E-02 |
| 80 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.26E-02 |
| 81 | GO:0050661: NADP binding | 3.26E-02 |
| 82 | GO:0004185: serine-type carboxypeptidase activity | 3.55E-02 |
| 83 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.76E-02 |
| 84 | GO:0045330: aspartyl esterase activity | 4.72E-02 |
| 85 | GO:0003723: RNA binding | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 4 | GO:0009570: chloroplast stroma | 3.30E-59 |
| 5 | GO:0009507: chloroplast | 8.56E-46 |
| 6 | GO:0009941: chloroplast envelope | 2.42E-32 |
| 7 | GO:0009579: thylakoid | 4.63E-29 |
| 8 | GO:0009534: chloroplast thylakoid | 8.22E-20 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 4.94E-17 |
| 10 | GO:0031977: thylakoid lumen | 1.07E-16 |
| 11 | GO:0005840: ribosome | 2.94E-16 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 6.22E-16 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 7.24E-07 |
| 14 | GO:0019898: extrinsic component of membrane | 3.89E-06 |
| 15 | GO:0010007: magnesium chelatase complex | 4.78E-06 |
| 16 | GO:0000311: plastid large ribosomal subunit | 1.07E-05 |
| 17 | GO:0016020: membrane | 1.09E-05 |
| 18 | GO:0030095: chloroplast photosystem II | 1.65E-05 |
| 19 | GO:0009923: fatty acid elongase complex | 1.62E-04 |
| 20 | GO:0009547: plastid ribosome | 1.62E-04 |
| 21 | GO:0010319: stromule | 1.69E-04 |
| 22 | GO:0009536: plastid | 3.48E-04 |
| 23 | GO:0000312: plastid small ribosomal subunit | 4.47E-04 |
| 24 | GO:0009509: chromoplast | 6.04E-04 |
| 25 | GO:0015935: small ribosomal subunit | 7.44E-04 |
| 26 | GO:0032432: actin filament bundle | 8.63E-04 |
| 27 | GO:0009523: photosystem II | 1.37E-03 |
| 28 | GO:0055035: plastid thylakoid membrane | 1.45E-03 |
| 29 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.78E-03 |
| 30 | GO:0000793: condensed chromosome | 1.78E-03 |
| 31 | GO:0000794: condensed nuclear chromosome | 2.52E-03 |
| 32 | GO:0022626: cytosolic ribosome | 4.15E-03 |
| 33 | GO:0005884: actin filament | 5.19E-03 |
| 34 | GO:0022625: cytosolic large ribosomal subunit | 5.90E-03 |
| 35 | GO:0009706: chloroplast inner membrane | 8.52E-03 |
| 36 | GO:0042651: thylakoid membrane | 9.09E-03 |
| 37 | GO:0005618: cell wall | 1.34E-02 |
| 38 | GO:0005759: mitochondrial matrix | 1.34E-02 |
| 39 | GO:0022627: cytosolic small ribosomal subunit | 1.96E-02 |
| 40 | GO:0009707: chloroplast outer membrane | 2.51E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.78E-02 |
| 42 | GO:0048046: apoplast | 3.20E-02 |
| 43 | GO:0005802: trans-Golgi network | 3.39E-02 |
| 44 | GO:0005768: endosome | 3.97E-02 |