GO Enrichment Analysis of Co-expressed Genes with
AT5G39830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 4 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 8 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 9 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 10 | GO:0006000: fructose metabolic process | 5.95E-10 |
| 11 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.37E-07 |
| 12 | GO:0006002: fructose 6-phosphate metabolic process | 2.67E-07 |
| 13 | GO:0009443: pyridoxal 5'-phosphate salvage | 6.42E-05 |
| 14 | GO:0043609: regulation of carbon utilization | 6.42E-05 |
| 15 | GO:0009853: photorespiration | 6.74E-05 |
| 16 | GO:0009735: response to cytokinin | 7.58E-05 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 7.90E-05 |
| 18 | GO:0005983: starch catabolic process | 9.25E-05 |
| 19 | GO:0006094: gluconeogenesis | 1.07E-04 |
| 20 | GO:0005986: sucrose biosynthetic process | 1.07E-04 |
| 21 | GO:0009662: etioplast organization | 1.55E-04 |
| 22 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.55E-04 |
| 23 | GO:0034755: iron ion transmembrane transport | 1.55E-04 |
| 24 | GO:0015979: photosynthesis | 1.75E-04 |
| 25 | GO:0061077: chaperone-mediated protein folding | 2.16E-04 |
| 26 | GO:0009152: purine ribonucleotide biosynthetic process | 3.82E-04 |
| 27 | GO:0046653: tetrahydrofolate metabolic process | 3.82E-04 |
| 28 | GO:0019252: starch biosynthetic process | 4.13E-04 |
| 29 | GO:0010021: amylopectin biosynthetic process | 5.10E-04 |
| 30 | GO:0019464: glycine decarboxylation via glycine cleavage system | 5.10E-04 |
| 31 | GO:0045727: positive regulation of translation | 5.10E-04 |
| 32 | GO:0015994: chlorophyll metabolic process | 5.10E-04 |
| 33 | GO:0032543: mitochondrial translation | 6.45E-04 |
| 34 | GO:0006544: glycine metabolic process | 6.45E-04 |
| 35 | GO:0006563: L-serine metabolic process | 7.90E-04 |
| 36 | GO:0006828: manganese ion transport | 7.90E-04 |
| 37 | GO:0032973: amino acid export | 7.90E-04 |
| 38 | GO:0006458: 'de novo' protein folding | 9.40E-04 |
| 39 | GO:0010019: chloroplast-nucleus signaling pathway | 9.40E-04 |
| 40 | GO:0042026: protein refolding | 9.40E-04 |
| 41 | GO:0043090: amino acid import | 1.10E-03 |
| 42 | GO:0010196: nonphotochemical quenching | 1.10E-03 |
| 43 | GO:0009704: de-etiolation | 1.26E-03 |
| 44 | GO:0032544: plastid translation | 1.44E-03 |
| 45 | GO:0017004: cytochrome complex assembly | 1.44E-03 |
| 46 | GO:0071482: cellular response to light stimulus | 1.44E-03 |
| 47 | GO:0080144: amino acid homeostasis | 1.62E-03 |
| 48 | GO:0006364: rRNA processing | 1.73E-03 |
| 49 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.81E-03 |
| 50 | GO:0035999: tetrahydrofolate interconversion | 1.81E-03 |
| 51 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.01E-03 |
| 52 | GO:0008152: metabolic process | 2.08E-03 |
| 53 | GO:0006879: cellular iron ion homeostasis | 2.21E-03 |
| 54 | GO:0009750: response to fructose | 2.21E-03 |
| 55 | GO:0006816: calcium ion transport | 2.21E-03 |
| 56 | GO:0010207: photosystem II assembly | 2.87E-03 |
| 57 | GO:0019253: reductive pentose-phosphate cycle | 2.87E-03 |
| 58 | GO:0090351: seedling development | 3.09E-03 |
| 59 | GO:0005985: sucrose metabolic process | 3.09E-03 |
| 60 | GO:0016575: histone deacetylation | 3.82E-03 |
| 61 | GO:0006418: tRNA aminoacylation for protein translation | 3.82E-03 |
| 62 | GO:0016226: iron-sulfur cluster assembly | 4.34E-03 |
| 63 | GO:0006730: one-carbon metabolic process | 4.34E-03 |
| 64 | GO:0016117: carotenoid biosynthetic process | 5.15E-03 |
| 65 | GO:0009658: chloroplast organization | 6.48E-03 |
| 66 | GO:0010027: thylakoid membrane organization | 8.54E-03 |
| 67 | GO:0015995: chlorophyll biosynthetic process | 9.57E-03 |
| 68 | GO:0045454: cell redox homeostasis | 9.62E-03 |
| 69 | GO:0016311: dephosphorylation | 9.93E-03 |
| 70 | GO:0009817: defense response to fungus, incompatible interaction | 1.03E-02 |
| 71 | GO:0006499: N-terminal protein myristoylation | 1.10E-02 |
| 72 | GO:0032259: methylation | 1.14E-02 |
| 73 | GO:0006855: drug transmembrane transport | 1.62E-02 |
| 74 | GO:0006417: regulation of translation | 1.93E-02 |
| 75 | GO:0009416: response to light stimulus | 2.11E-02 |
| 76 | GO:0009626: plant-type hypersensitive response | 2.12E-02 |
| 77 | GO:0045893: positive regulation of transcription, DNA-templated | 2.43E-02 |
| 78 | GO:0006457: protein folding | 2.74E-02 |
| 79 | GO:0009058: biosynthetic process | 2.81E-02 |
| 80 | GO:0006413: translational initiation | 3.24E-02 |
| 81 | GO:0007623: circadian rhythm | 3.41E-02 |
| 82 | GO:0009451: RNA modification | 3.46E-02 |
| 83 | GO:0006508: proteolysis | 3.80E-02 |
| 84 | GO:0042254: ribosome biogenesis | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 2 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 6 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 7 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 8 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 9 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 10 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 11 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 12 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 13 | GO:0051060: pullulanase activity | 0.00E+00 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.37E-07 |
| 15 | GO:0008266: poly(U) RNA binding | 1.93E-06 |
| 16 | GO:0004033: aldo-keto reductase (NADP) activity | 2.83E-05 |
| 17 | GO:0004856: xylulokinase activity | 6.42E-05 |
| 18 | GO:0070006: metalloaminopeptidase activity | 6.42E-05 |
| 19 | GO:0047746: chlorophyllase activity | 1.55E-04 |
| 20 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.55E-04 |
| 21 | GO:0033201: alpha-1,4-glucan synthase activity | 1.55E-04 |
| 22 | GO:0005528: FK506 binding | 1.75E-04 |
| 23 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.63E-04 |
| 24 | GO:0070402: NADPH binding | 2.63E-04 |
| 25 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.63E-04 |
| 26 | GO:0004324: ferredoxin-NADP+ reductase activity | 2.63E-04 |
| 27 | GO:0004373: glycogen (starch) synthase activity | 2.63E-04 |
| 28 | GO:0002161: aminoacyl-tRNA editing activity | 2.63E-04 |
| 29 | GO:0048487: beta-tubulin binding | 3.82E-04 |
| 30 | GO:0009011: starch synthase activity | 5.10E-04 |
| 31 | GO:0004372: glycine hydroxymethyltransferase activity | 6.45E-04 |
| 32 | GO:0003959: NADPH dehydrogenase activity | 6.45E-04 |
| 33 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 6.45E-04 |
| 34 | GO:0004721: phosphoprotein phosphatase activity | 7.39E-04 |
| 35 | GO:0004556: alpha-amylase activity | 7.90E-04 |
| 36 | GO:2001070: starch binding | 7.90E-04 |
| 37 | GO:0043022: ribosome binding | 1.26E-03 |
| 38 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.44E-03 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-03 |
| 40 | GO:0005381: iron ion transmembrane transporter activity | 1.81E-03 |
| 41 | GO:0005384: manganese ion transmembrane transporter activity | 1.81E-03 |
| 42 | GO:0004177: aminopeptidase activity | 2.21E-03 |
| 43 | GO:0044183: protein binding involved in protein folding | 2.21E-03 |
| 44 | GO:0015386: potassium:proton antiporter activity | 2.21E-03 |
| 45 | GO:0051082: unfolded protein binding | 2.45E-03 |
| 46 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.64E-03 |
| 47 | GO:0015095: magnesium ion transmembrane transporter activity | 2.64E-03 |
| 48 | GO:0031072: heat shock protein binding | 2.64E-03 |
| 49 | GO:0051536: iron-sulfur cluster binding | 3.57E-03 |
| 50 | GO:0004407: histone deacetylase activity | 3.57E-03 |
| 51 | GO:0015079: potassium ion transmembrane transporter activity | 3.82E-03 |
| 52 | GO:0004812: aminoacyl-tRNA ligase activity | 5.15E-03 |
| 53 | GO:0016787: hydrolase activity | 6.00E-03 |
| 54 | GO:0050662: coenzyme binding | 6.01E-03 |
| 55 | GO:0008168: methyltransferase activity | 6.24E-03 |
| 56 | GO:0008237: metallopeptidase activity | 7.88E-03 |
| 57 | GO:0015238: drug transmembrane transporter activity | 1.07E-02 |
| 58 | GO:0004222: metalloendopeptidase activity | 1.10E-02 |
| 59 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.29E-02 |
| 60 | GO:0016491: oxidoreductase activity | 1.32E-02 |
| 61 | GO:0046872: metal ion binding | 1.35E-02 |
| 62 | GO:0043621: protein self-association | 1.54E-02 |
| 63 | GO:0015171: amino acid transmembrane transporter activity | 1.93E-02 |
| 64 | GO:0019843: rRNA binding | 2.71E-02 |
| 65 | GO:0030170: pyridoxal phosphate binding | 2.92E-02 |
| 66 | GO:0015297: antiporter activity | 3.30E-02 |
| 67 | GO:0003743: translation initiation factor activity | 3.80E-02 |
| 68 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.04E-02 |
| 69 | GO:0003824: catalytic activity | 4.68E-02 |
| 70 | GO:0005215: transporter activity | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.71E-26 |
| 4 | GO:0009570: chloroplast stroma | 4.49E-17 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.26E-13 |
| 6 | GO:0009941: chloroplast envelope | 1.11E-09 |
| 7 | GO:0009534: chloroplast thylakoid | 2.25E-09 |
| 8 | GO:0031969: chloroplast membrane | 4.56E-07 |
| 9 | GO:0009579: thylakoid | 8.97E-07 |
| 10 | GO:0010287: plastoglobule | 3.11E-04 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 3.33E-04 |
| 12 | GO:0010319: stromule | 5.65E-04 |
| 13 | GO:0009501: amyloplast | 1.26E-03 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.62E-03 |
| 15 | GO:0048046: apoplast | 3.57E-03 |
| 16 | GO:0042651: thylakoid membrane | 3.82E-03 |
| 17 | GO:0005759: mitochondrial matrix | 3.82E-03 |
| 18 | GO:0009707: chloroplast outer membrane | 1.03E-02 |
| 19 | GO:0031977: thylakoid lumen | 1.37E-02 |
| 20 | GO:0009706: chloroplast inner membrane | 2.31E-02 |